EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSPKIG00000019409 (Gene tree)
Gene ID: 111861161
Gene Symbol: LSM1 (1 of many)
Alias: -
Full Name: U6 snRNA-associated Sm-like protein LSm1
Gene Type: protein_coding
Species: Paramormyrops_kingsleyae
Status: putative
Strand: Minus strand
Length: 4059 bases
Position: chrPGUA01000420.1:335869-339927
Accession: 111861161
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPKIP00000000938	LSM	PF01423.22	1.8e-16	1	1
ENSPKIP00000000946	LSM	PF01423.22	2.6e-16	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPKIT00000024850	LSM1 (1 of many)-202	1657	-	ENSPKIP00000000946	154 (aa)	-	-
ENSPKIT00000024842	LSM1 (1 of many)-201	2717	-	ENSPKIP00000000938	134 (aa)	XP_023701301	UPI000CD66760

Gene Model

Click here to download ENSPKIG00000019409's gene model file

Pathways

Pathway ID	Pathway Name	Source
pki03018	RNA degradation	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSPKIG00000019409's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSPKIG00000019409	LSM1	99	82.707	ENSPKIG00000001839	lsm1	100	82.707

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPKIG00000019409	LSM1	99	82.707	ENSG00000175324	LSM1	100	82.707	Homo_sapiens
ENSPKIG00000019409	LSM1	99	78.195	ENSAPOG00000010833	lsm1	100	78.195	Acanthochromis_polyacanthus
ENSPKIG00000019409	LSM1	99	82.707	ENSAMEG00000011141	LSM1	100	82.707	Ailuropoda_melanoleuca
ENSPKIG00000019409	LSM1	57	85.714	ENSACIG00000019593	lsm1	64	85.714	Amphilophus_citrinellus
ENSPKIG00000019409	LSM1	99	78.195	ENSAOCG00000017096	lsm1	100	78.195	Amphiprion_ocellaris
ENSPKIG00000019409	LSM1	99	78.195	ENSAOCG00000017997	-	100	78.195	Amphiprion_ocellaris
ENSPKIG00000019409	LSM1	99	78.195	ENSAPEG00000011669	lsm1	100	78.195	Amphiprion_percula
ENSPKIG00000019409	LSM1	99	78.947	ENSATEG00000022266	lsm1	100	78.947	Anabas_testudineus
ENSPKIG00000019409	LSM1	99	82.707	ENSANAG00000027785	LSM1	100	82.707	Aotus_nancymaae
ENSPKIG00000019409	LSM1	99	78.947	ENSACLG00000011400	lsm1	100	78.947	Astatotilapia_calliptera
ENSPKIG00000019409	LSM1	99	80.451	ENSAMXG00000005441	lsm1	100	80.451	Astyanax_mexicanus
ENSPKIG00000019409	LSM1	99	81.955	ENSBTAG00000001612	LSM1	100	81.955	Bos_taurus
ENSPKIG00000019409	LSM1	83	52.137	WBGene00003076	lsm-1	92	52.137	Caenorhabditis_elegans
ENSPKIG00000019409	LSM1	99	81.955	ENSCJAG00000048015	LSM1	100	81.955	Callithrix_jacchus
ENSPKIG00000019409	LSM1	99	82.707	ENSCAFG00000006113	LSM1	100	82.707	Canis_familiaris
ENSPKIG00000019409	LSM1	99	82.707	ENSCAFG00020001822	LSM1	100	82.707	Canis_lupus_dingo
ENSPKIG00000019409	LSM1	99	82.707	ENSCHIG00000013194	LSM1	100	82.707	Capra_hircus
ENSPKIG00000019409	LSM1	99	82.707	ENSTSYG00000010394	LSM1	100	82.707	Carlito_syrichta
ENSPKIG00000019409	LSM1	99	82.707	ENSCPOG00000032671	LSM1	100	82.707	Cavia_porcellus
ENSPKIG00000019409	LSM1	99	82.707	ENSCCAG00000037171	LSM1	100	82.707	Cebus_capucinus
ENSPKIG00000019409	LSM1	99	82.707	ENSCATG00000020377	LSM1	100	82.707	Cercocebus_atys
ENSPKIG00000019409	LSM1	99	81.203	ENSCLAG00000001137	LSM1	100	81.203	Chinchilla_lanigera
ENSPKIG00000019409	LSM1	99	82.707	ENSCSAG00000015485	LSM1	100	82.707	Chlorocebus_sabaeus
ENSPKIG00000019409	LSM1	99	83.459	ENSCHOG00000006030	LSM1	100	83.459	Choloepus_hoffmanni
ENSPKIG00000019409	LSM1	95	77.953	ENSCPBG00000006569	LSM1	86	77.953	Chrysemys_picta_bellii
ENSPKIG00000019409	LSM1	99	68.182	ENSCING00000013536	-	99	68.182	Ciona_intestinalis
ENSPKIG00000019409	LSM1	99	82.707	ENSCANG00000019173	LSM1	100	82.707	Colobus_angolensis_palliatus
ENSPKIG00000019409	LSM1	79	72.973	ENSCGRG00001002259	-	97	72.973	Cricetulus_griseus_chok1gshd
ENSPKIG00000019409	LSM1	99	81.955	ENSCGRG00001024560	-	100	81.955	Cricetulus_griseus_chok1gshd
ENSPKIG00000019409	LSM1	99	81.955	ENSCGRG00000006554	-	100	81.955	Cricetulus_griseus_crigri
ENSPKIG00000019409	LSM1	79	72.973	ENSCGRG00000013603	-	97	72.973	Cricetulus_griseus_crigri
ENSPKIG00000019409	LSM1	99	78.947	ENSCSEG00000008319	lsm1	92	78.947	Cynoglossus_semilaevis
ENSPKIG00000019409	LSM1	99	79.699	ENSCSEG00000010570	lsm1	92	79.699	Cynoglossus_semilaevis
ENSPKIG00000019409	LSM1	99	77.444	ENSCVAG00000003871	lsm1	100	77.444	Cyprinodon_variegatus
ENSPKIG00000019409	LSM1	99	79.699	ENSDARG00000043177	lsm1	100	79.699	Danio_rerio
ENSPKIG00000019409	LSM1	99	77.273	ENSDNOG00000030989	-	99	77.273	Dasypus_novemcinctus
ENSPKIG00000019409	LSM1	99	81.955	ENSDNOG00000032911	-	100	81.955	Dasypus_novemcinctus
ENSPKIG00000019409	LSM1	99	82.707	ENSDNOG00000046387	-	100	82.707	Dasypus_novemcinctus
ENSPKIG00000019409	LSM1	89	63.866	ENSDNOG00000046620	-	100	63.866	Dasypus_novemcinctus
ENSPKIG00000019409	LSM1	99	82.707	ENSDORG00000028172	Lsm1	100	82.707	Dipodomys_ordii
ENSPKIG00000019409	LSM1	93	63.710	FBgn0261067	LSm1	97	57.971	Drosophila_melanogaster
ENSPKIG00000019409	LSM1	99	81.955	ENSEASG00005016677	LSM1	100	81.955	Equus_asinus_asinus
ENSPKIG00000019409	LSM1	99	81.955	ENSECAG00000010461	LSM1	100	81.955	Equus_caballus
ENSPKIG00000019409	LSM1	72	79.167	ENSEEUG00000015181	LSM1	97	79.167	Erinaceus_europaeus
ENSPKIG00000019409	LSM1	99	77.444	ENSELUG00000023374	lsm1	100	77.444	Esox_lucius
ENSPKIG00000019409	LSM1	99	78.947	ENSELUG00000002322	lsm1	100	78.947	Esox_lucius
ENSPKIG00000019409	LSM1	99	82.707	ENSFCAG00000039335	LSM1	100	82.707	Felis_catus
ENSPKIG00000019409	LSM1	88	84.746	ENSFALG00000006723	LSM1	100	84.746	Ficedula_albicollis
ENSPKIG00000019409	LSM1	99	82.707	ENSFDAG00000007658	LSM1	100	82.707	Fukomys_damarensis
ENSPKIG00000019409	LSM1	99	77.444	ENSFHEG00000009556	lsm1	100	77.444	Fundulus_heteroclitus
ENSPKIG00000019409	LSM1	99	78.947	ENSGMOG00000016651	lsm1	98	78.947	Gadus_morhua
ENSPKIG00000019409	LSM1	99	83.459	ENSGALG00000003245	LSM1	100	83.459	Gallus_gallus
ENSPKIG00000019409	LSM1	99	77.444	ENSGAFG00000011355	lsm1	100	77.444	Gambusia_affinis
ENSPKIG00000019409	LSM1	99	77.444	ENSGACG00000011763	lsm1	98	77.444	Gasterosteus_aculeatus
ENSPKIG00000019409	LSM1	99	82.707	ENSGAGG00000024065	LSM1	100	82.707	Gopherus_agassizii
ENSPKIG00000019409	LSM1	99	82.707	ENSGGOG00000022658	LSM1	100	82.707	Gorilla_gorilla
ENSPKIG00000019409	LSM1	99	78.947	ENSHBUG00000010897	lsm1	100	78.947	Haplochromis_burtoni
ENSPKIG00000019409	LSM1	99	82.707	ENSHGLG00000005711	LSM1	100	82.707	Heterocephalus_glaber_female
ENSPKIG00000019409	LSM1	99	68.421	ENSHGLG00000017574	-	100	68.421	Heterocephalus_glaber_female
ENSPKIG00000019409	LSM1	99	68.421	ENSHGLG00100012152	-	100	68.421	Heterocephalus_glaber_male
ENSPKIG00000019409	LSM1	99	82.707	ENSHGLG00100017660	LSM1	100	82.707	Heterocephalus_glaber_male
ENSPKIG00000019409	LSM1	99	78.195	ENSHCOG00000017233	lsm1	100	78.195	Hippocampus_comes
ENSPKIG00000019409	LSM1	99	78.947	ENSIPUG00000002312	LSM1	100	78.947	Ictalurus_punctatus
ENSPKIG00000019409	LSM1	57	93.506	ENSSTOG00000026870	LSM1	94	93.506	Ictidomys_tridecemlineatus
ENSPKIG00000019409	LSM1	99	81.955	ENSJJAG00000014605	-	100	81.955	Jaculus_jaculus
ENSPKIG00000019409	LSM1	99	78.947	ENSKMAG00000003016	lsm1	100	78.947	Kryptolebias_marmoratus
ENSPKIG00000019409	LSM1	99	78.195	ENSLBEG00000022352	lsm1	100	78.195	Labrus_bergylta
ENSPKIG00000019409	LSM1	88	83.898	ENSLACG00000010947	LSM1	98	83.898	Latimeria_chalumnae
ENSPKIG00000019409	LSM1	99	84.211	ENSLOCG00000015149	lsm1	100	84.211	Lepisosteus_oculatus
ENSPKIG00000019409	LSM1	99	82.707	ENSLAFG00000003534	LSM1	100	82.707	Loxodonta_africana
ENSPKIG00000019409	LSM1	99	82.707	ENSMFAG00000032661	LSM1	100	82.707	Macaca_fascicularis
ENSPKIG00000019409	LSM1	99	82.707	ENSMLEG00000034535	LSM1	100	82.707	Mandrillus_leucophaeus
ENSPKIG00000019409	LSM1	99	78.195	ENSMAMG00000007464	lsm1	100	78.195	Mastacembelus_armatus
ENSPKIG00000019409	LSM1	99	78.947	ENSMZEG00005010321	lsm1	100	78.947	Maylandia_zebra
ENSPKIG00000019409	LSM1	99	83.459	ENSMGAG00000002125	LSM1	100	83.459	Meleagris_gallopavo
ENSPKIG00000019409	LSM1	99	82.707	ENSMICG00000030726	LSM1	100	82.707	Microcebus_murinus
ENSPKIG00000019409	LSM1	99	81.955	ENSMOCG00000022817	Lsm1	100	81.955	Microtus_ochrogaster
ENSPKIG00000019409	LSM1	99	78.195	ENSMMOG00000015466	lsm1	100	78.195	Mola_mola
ENSPKIG00000019409	LSM1	99	83.459	ENSMODG00000010732	-	100	83.459	Monodelphis_domestica
ENSPKIG00000019409	LSM1	57	85.714	ENSMALG00000001478	lsm1	82	85.714	Monopterus_albus
ENSPKIG00000019409	LSM1	99	82.707	MGP_CAROLIEiJ_G0030930	Lsm1	100	82.707	Mus_caroli
ENSPKIG00000019409	LSM1	99	82.707	ENSMUSG00000037296	Lsm1	91	92.308	Mus_musculus
ENSPKIG00000019409	LSM1	99	82.707	MGP_PahariEiJ_G0021400	Lsm1	100	82.707	Mus_pahari
ENSPKIG00000019409	LSM1	99	82.707	MGP_SPRETEiJ_G0032049	Lsm1	100	82.707	Mus_spretus
ENSPKIG00000019409	LSM1	99	83.459	ENSMPUG00000009883	LSM1	100	83.459	Mustela_putorius_furo
ENSPKIG00000019409	LSM1	99	81.955	ENSMLUG00000003734	LSM1	100	81.955	Myotis_lucifugus
ENSPKIG00000019409	LSM1	99	81.955	ENSNGAG00000003753	Lsm1	100	81.955	Nannospalax_galili
ENSPKIG00000019409	LSM1	57	85.714	ENSNBRG00000017370	lsm1	66	85.714	Neolamprologus_brichardi
ENSPKIG00000019409	LSM1	99	82.707	ENSNLEG00000029390	LSM1	100	82.707	Nomascus_leucogenys
ENSPKIG00000019409	LSM1	99	83.459	ENSMEUG00000014077	LSM1	100	83.459	Notamacropus_eugenii
ENSPKIG00000019409	LSM1	87	80.342	ENSOPRG00000000333	LSM1	100	80.342	Ochotona_princeps
ENSPKIG00000019409	LSM1	99	82.707	ENSODEG00000004834	LSM1	100	82.707	Octodon_degus
ENSPKIG00000019409	LSM1	99	78.947	ENSONIG00000010782	lsm1	100	78.947	Oreochromis_niloticus
ENSPKIG00000019409	LSM1	99	83.459	ENSOANG00000003256	LSM1	100	83.459	Ornithorhynchus_anatinus
ENSPKIG00000019409	LSM1	99	82.707	ENSOCUG00000015399	LSM1	100	82.707	Oryctolagus_cuniculus
ENSPKIG00000019409	LSM1	99	78.947	ENSORLG00000030288	lsm1	100	78.947	Oryzias_latipes
ENSPKIG00000019409	LSM1	99	78.947	ENSORLG00020003941	lsm1	100	78.947	Oryzias_latipes_hni
ENSPKIG00000019409	LSM1	99	77.444	ENSORLG00020006213	-	86	77.444	Oryzias_latipes_hni
ENSPKIG00000019409	LSM1	99	78.947	ENSORLG00015018350	lsm1	100	78.947	Oryzias_latipes_hsok
ENSPKIG00000019409	LSM1	99	80.451	ENSOMEG00000012454	lsm1	100	80.451	Oryzias_melastigma
ENSPKIG00000019409	LSM1	99	82.707	ENSOGAG00000015161	LSM1	100	82.707	Otolemur_garnettii
ENSPKIG00000019409	LSM1	99	82.707	ENSOARG00000001317	LSM1	100	82.707	Ovis_aries
ENSPKIG00000019409	LSM1	99	82.707	ENSPPAG00000032279	LSM1	100	82.707	Pan_paniscus
ENSPKIG00000019409	LSM1	99	82.707	ENSPPRG00000014172	-	100	82.707	Panthera_pardus
ENSPKIG00000019409	LSM1	99	82.707	ENSPTIG00000010289	LSM1	100	82.707	Panthera_tigris_altaica
ENSPKIG00000019409	LSM1	99	82.707	ENSPTRG00000020169	LSM1	100	82.707	Pan_troglodytes
ENSPKIG00000019409	LSM1	99	82.707	ENSPANG00000008814	LSM1	100	82.707	Papio_anubis
ENSPKIG00000019409	LSM1	96	79.070	ENSPSIG00000012563	LSM1	98	79.070	Pelodiscus_sinensis
ENSPKIG00000019409	LSM1	57	85.714	ENSPMGG00000022999	lsm1	73	85.714	Periophthalmus_magnuspinnatus
ENSPKIG00000019409	LSM1	84	76.106	ENSPMAG00000002671	lsm1	100	76.106	Petromyzon_marinus
ENSPKIG00000019409	LSM1	99	83.459	ENSPCIG00000008880	LSM1	100	83.459	Phascolarctos_cinereus
ENSPKIG00000019409	LSM1	99	77.444	ENSPFOG00000016029	lsm1	100	77.444	Poecilia_formosa
ENSPKIG00000019409	LSM1	99	77.444	ENSPLAG00000007879	lsm1	100	77.444	Poecilia_latipinna
ENSPKIG00000019409	LSM1	99	77.444	ENSPMEG00000023550	lsm1	100	77.444	Poecilia_mexicana
ENSPKIG00000019409	LSM1	99	77.444	ENSPREG00000009574	lsm1	100	77.444	Poecilia_reticulata
ENSPKIG00000019409	LSM1	99	82.707	ENSPPYG00000018521	LSM1	100	82.707	Pongo_abelii
ENSPKIG00000019409	LSM1	99	82.707	ENSPCOG00000020901	-	100	82.707	Propithecus_coquereli
ENSPKIG00000019409	LSM1	99	82.707	ENSPVAG00000006016	LSM1	100	82.707	Pteropus_vampyrus
ENSPKIG00000019409	LSM1	99	78.947	ENSPNYG00000018067	lsm1	100	78.947	Pundamilia_nyererei
ENSPKIG00000019409	LSM1	99	79.699	ENSPNAG00000013707	lsm1	100	79.699	Pygocentrus_nattereri
ENSPKIG00000019409	LSM1	99	81.203	ENSRNOG00000015375	Lsm1	100	81.203	Rattus_norvegicus
ENSPKIG00000019409	LSM1	99	82.707	ENSRBIG00000027449	LSM1	100	82.707	Rhinopithecus_bieti
ENSPKIG00000019409	LSM1	99	82.707	ENSRROG00000036074	LSM1	100	82.707	Rhinopithecus_roxellana
ENSPKIG00000019409	LSM1	99	83.459	ENSSHAG00000017260	LSM1	100	83.459	Sarcophilus_harrisii
ENSPKIG00000019409	LSM1	99	83.459	ENSSFOG00015019528	lsm1	100	83.459	Scleropages_formosus
ENSPKIG00000019409	LSM1	99	78.947	ENSSMAG00000004930	lsm1	100	78.947	Scophthalmus_maximus
ENSPKIG00000019409	LSM1	99	78.947	ENSSDUG00000021823	lsm1	100	78.947	Seriola_dumerili
ENSPKIG00000019409	LSM1	99	78.947	ENSSLDG00000012154	lsm1	100	78.947	Seriola_lalandi_dorsalis
ENSPKIG00000019409	LSM1	99	82.707	ENSSPUG00000014878	LSM1	100	82.707	Sphenodon_punctatus
ENSPKIG00000019409	LSM1	99	78.195	ENSSPAG00000020548	lsm1	100	78.195	Stegastes_partitus
ENSPKIG00000019409	LSM1	99	82.707	ENSSSCG00000039058	LSM1	100	82.707	Sus_scrofa
ENSPKIG00000019409	LSM1	99	83.459	ENSTGUG00000004793	LSM1	100	83.459	Taeniopygia_guttata
ENSPKIG00000019409	LSM1	99	78.195	ENSTRUG00000025239	lsm1	100	78.195	Takifugu_rubripes
ENSPKIG00000019409	LSM1	99	78.195	ENSTNIG00000004055	lsm1	100	78.195	Tetraodon_nigroviridis
ENSPKIG00000019409	LSM1	87	79.487	ENSTBEG00000015884	LSM1	100	79.487	Tupaia_belangeri
ENSPKIG00000019409	LSM1	99	82.707	ENSTTRG00000004482	LSM1	100	82.707	Tursiops_truncatus
ENSPKIG00000019409	LSM1	99	82.707	ENSUAMG00000004103	LSM1	100	82.707	Ursus_americanus
ENSPKIG00000019409	LSM1	99	82.707	ENSUMAG00000009132	LSM1	100	82.707	Ursus_maritimus
ENSPKIG00000019409	LSM1	57	92.208	ENSVPAG00000011593	LSM1	100	92.208	Vicugna_pacos
ENSPKIG00000019409	LSM1	99	82.707	ENSVVUG00000020191	LSM1	100	82.707	Vulpes_vulpes
ENSPKIG00000019409	LSM1	59	68.354	ENSVVUG00000014880	-	84	68.354	Vulpes_vulpes
ENSPKIG00000019409	LSM1	99	81.022	ENSXETG00000009004	lsm1	100	81.022	Xenopus_tropicalis
ENSPKIG00000019409	LSM1	99	78.947	ENSXCOG00000015631	lsm1	100	78.947	Xiphophorus_couchianus
ENSPKIG00000019409	LSM1	99	78.947	ENSXMAG00000026637	lsm1	100	78.947	Xiphophorus_maculatus