EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSPKIG00000021058 (Gene tree)
Gene ID: 111848665
Gene Symbol: lsm12b
Alias: -
Full Name: LSM12 homolog
Gene Type: protein_coding
Species: Paramormyrops_kingsleyae
Status: putative
Strand: Plus strand
Length: 7792 bases
Position: chrPGUA01000182.1:113848-121639
Accession: 111848665
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPKIP00000003651	AD	PF09793.9	2e-24	1	1
ENSPKIP00000003642	AD	PF09793.9	3.3e-24	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPKIT00000027614	-	1036	-	ENSPKIP00000003651	182 (aa)	-	-
ENSPKIT00000027604	-	3417	-	ENSPKIP00000003642	196 (aa)	XP_023676640	UPI000CD66237

Gene Model

Click here to download ENSPKIG00000021058's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPKIG00000021058's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSPKIG00000021058	lsm12b	100	83.673	ENSPKIG00000017932	-	100	83.673

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPKIG00000021058	lsm12b	100	86.224	ENSG00000161654	LSM12	100	86.224	Homo_sapiens
ENSPKIG00000021058	lsm12b	100	94.388	ENSAPOG00000007907	lsm12b	100	94.388	Acanthochromis_polyacanthus
ENSPKIG00000021058	lsm12b	100	84.422	ENSAMEG00000018321	LSM12	100	84.422	Ailuropoda_melanoleuca
ENSPKIG00000021058	lsm12b	100	91.837	ENSACIG00000008538	lsm12b	100	91.837	Amphilophus_citrinellus
ENSPKIG00000021058	lsm12b	100	93.878	ENSAOCG00000021847	lsm12b	88	93.878	Amphiprion_ocellaris
ENSPKIG00000021058	lsm12b	100	93.878	ENSAPEG00000002252	lsm12b	100	93.878	Amphiprion_percula
ENSPKIG00000021058	lsm12b	100	92.347	ENSATEG00000005705	lsm12b	100	92.347	Anabas_testudineus
ENSPKIG00000021058	lsm12b	100	85.714	ENSACAG00000004618	LSM12	100	85.714	Anolis_carolinensis
ENSPKIG00000021058	lsm12b	100	86.224	ENSANAG00000029011	LSM12	100	86.486	Aotus_nancymaae
ENSPKIG00000021058	lsm12b	100	92.347	ENSACLG00000026332	lsm12b	100	92.347	Astatotilapia_calliptera
ENSPKIG00000021058	lsm12b	100	86.224	ENSAMXG00000036117	lsm12a	91	86.224	Astyanax_mexicanus
ENSPKIG00000021058	lsm12b	100	92.857	ENSAMXG00000032952	lsm12b	100	92.857	Astyanax_mexicanus
ENSPKIG00000021058	lsm12b	100	86.224	ENSBTAG00000016252	LSM12	100	86.224	Bos_taurus
ENSPKIG00000021058	lsm12b	100	86.224	ENSCJAG00000048480	LSM12	100	86.486	Callithrix_jacchus
ENSPKIG00000021058	lsm12b	100	86.224	ENSCAFG00000014379	LSM12	92	86.224	Canis_familiaris
ENSPKIG00000021058	lsm12b	100	86.224	ENSCAFG00020012173	LSM12	100	86.224	Canis_lupus_dingo
ENSPKIG00000021058	lsm12b	100	86.224	ENSCHIG00000018175	LSM12	100	86.224	Capra_hircus
ENSPKIG00000021058	lsm12b	100	86.224	ENSTSYG00000036361	LSM12	100	86.224	Carlito_syrichta
ENSPKIG00000021058	lsm12b	83	81.481	ENSCAPG00000009647	LSM12	89	81.481	Cavia_aperea
ENSPKIG00000021058	lsm12b	100	85.204	ENSCPOG00000012860	LSM12	100	85.586	Cavia_porcellus
ENSPKIG00000021058	lsm12b	100	86.224	ENSCCAG00000032905	LSM12	100	86.486	Cebus_capucinus
ENSPKIG00000021058	lsm12b	100	86.224	ENSCATG00000030577	-	100	86.486	Cercocebus_atys
ENSPKIG00000021058	lsm12b	100	85.714	ENSCLAG00000015759	LSM12	100	85.714	Chinchilla_lanigera
ENSPKIG00000021058	lsm12b	100	85.714	ENSCSAG00000003486	LSM12	100	85.714	Chlorocebus_sabaeus
ENSPKIG00000021058	lsm12b	56	86.239	ENSCHOG00000001198	LSM12	100	86.239	Choloepus_hoffmanni
ENSPKIG00000021058	lsm12b	100	85.204	ENSCPBG00000027105	LSM12	100	85.204	Chrysemys_picta_bellii
ENSPKIG00000021058	lsm12b	100	86.224	ENSCANG00000043328	LSM12	100	86.486	Colobus_angolensis_palliatus
ENSPKIG00000021058	lsm12b	100	86.224	ENSCGRG00001002094	Lsm12	100	86.486	Cricetulus_griseus_chok1gshd
ENSPKIG00000021058	lsm12b	89	77.586	ENSCGRG00000004316	Lsm12	98	77.586	Cricetulus_griseus_crigri
ENSPKIG00000021058	lsm12b	100	93.367	ENSCSEG00000008434	lsm12b	100	93.367	Cynoglossus_semilaevis
ENSPKIG00000021058	lsm12b	100	93.367	ENSCVAG00000008755	lsm12b	100	93.367	Cyprinodon_variegatus
ENSPKIG00000021058	lsm12b	100	91.837	ENSDARG00000109510	lsm12b	100	91.837	Danio_rerio
ENSPKIG00000021058	lsm12b	100	87.755	ENSDARG00000028848	lsm12a	100	87.755	Danio_rerio
ENSPKIG00000021058	lsm12b	100	86.224	ENSDNOG00000002418	LSM12	91	86.224	Dasypus_novemcinctus
ENSPKIG00000021058	lsm12b	100	86.224	ENSDORG00000016381	Lsm12	100	86.486	Dipodomys_ordii
ENSPKIG00000021058	lsm12b	83	34.337	FBgn0030364	Lsm12	76	34.337	Drosophila_melanogaster
ENSPKIG00000021058	lsm12b	87	31.214	FBgn0036057	CG14164	85	31.214	Drosophila_melanogaster
ENSPKIG00000021058	lsm12b	100	85.714	ENSETEG00000008374	LSM12	100	85.714	Echinops_telfairi
ENSPKIG00000021058	lsm12b	88	76.879	ENSETEG00000011012	-	99	76.879	Echinops_telfairi
ENSPKIG00000021058	lsm12b	92	66.667	ENSEBUG00000016299	lsm12a	92	67.066	Eptatretus_burgeri
ENSPKIG00000021058	lsm12b	100	86.224	ENSEASG00005010155	LSM12	100	86.224	Equus_asinus_asinus
ENSPKIG00000021058	lsm12b	100	86.224	ENSECAG00000009071	LSM12	100	86.486	Equus_caballus
ENSPKIG00000021058	lsm12b	78	84.967	ENSEEUG00000002419	-	100	84.967	Erinaceus_europaeus
ENSPKIG00000021058	lsm12b	100	93.367	ENSELUG00000015538	lsm12b	100	88.776	Esox_lucius
ENSPKIG00000021058	lsm12b	100	90.816	ENSELUG00000000256	-	100	90.816	Esox_lucius
ENSPKIG00000021058	lsm12b	100	86.224	ENSFCAG00000037021	LSM12	100	86.224	Felis_catus
ENSPKIG00000021058	lsm12b	80	82.051	ENSFDAG00000008954	LSM12	91	82.051	Fukomys_damarensis
ENSPKIG00000021058	lsm12b	100	93.367	ENSFHEG00000019913	lsm12b	100	93.367	Fundulus_heteroclitus
ENSPKIG00000021058	lsm12b	81	93.038	ENSGMOG00000015449	lsm12b	100	93.038	Gadus_morhua
ENSPKIG00000021058	lsm12b	78	86.928	ENSGALG00000039803	LSM12	100	86.928	Gallus_gallus
ENSPKIG00000021058	lsm12b	100	92.857	ENSGAFG00000011829	lsm12b	100	92.857	Gambusia_affinis
ENSPKIG00000021058	lsm12b	81	93.038	ENSGACG00000003428	lsm12b	100	93.038	Gasterosteus_aculeatus
ENSPKIG00000021058	lsm12b	100	85.204	ENSGAGG00000021965	LSM12	100	85.204	Gopherus_agassizii
ENSPKIG00000021058	lsm12b	100	86.224	ENSGGOG00000010589	-	100	86.486	Gorilla_gorilla
ENSPKIG00000021058	lsm12b	91	92.169	ENSHBUG00000007667	lsm12b	74	92.216	Haplochromis_burtoni
ENSPKIG00000021058	lsm12b	100	86.224	ENSHGLG00000011411	LSM12	100	86.486	Heterocephalus_glaber_female
ENSPKIG00000021058	lsm12b	79	85.065	ENSHGLG00100000241	LSM12	82	85.065	Heterocephalus_glaber_male
ENSPKIG00000021058	lsm12b	100	93.878	ENSHCOG00000002094	lsm12b	100	93.878	Hippocampus_comes
ENSPKIG00000021058	lsm12b	99	81.959	ENSIPUG00000008936	lsm12a	99	81.959	Ictalurus_punctatus
ENSPKIG00000021058	lsm12b	100	91.327	ENSIPUG00000014800	lsm12	100	91.327	Ictalurus_punctatus
ENSPKIG00000021058	lsm12b	100	86.224	ENSSTOG00000007403	LSM12	100	86.486	Ictidomys_tridecemlineatus
ENSPKIG00000021058	lsm12b	100	85.204	ENSJJAG00000004364	-	100	85.586	Jaculus_jaculus
ENSPKIG00000021058	lsm12b	90	71.084	ENSJJAG00000014652	-	99	71.084	Jaculus_jaculus
ENSPKIG00000021058	lsm12b	96	76.316	ENSJJAG00000011793	-	100	76.316	Jaculus_jaculus
ENSPKIG00000021058	lsm12b	91	93.976	ENSKMAG00000007704	lsm12b	56	94.012	Kryptolebias_marmoratus
ENSPKIG00000021058	lsm12b	100	93.878	ENSLBEG00000027999	lsm12b	100	93.878	Labrus_bergylta
ENSPKIG00000021058	lsm12b	100	87.755	ENSLACG00000015981	LSM12	100	87.755	Latimeria_chalumnae
ENSPKIG00000021058	lsm12b	100	90.816	ENSLOCG00000013079	lsm12b	99	90.816	Lepisosteus_oculatus
ENSPKIG00000021058	lsm12b	100	86.224	ENSLAFG00000005202	LSM12	100	86.224	Loxodonta_africana
ENSPKIG00000021058	lsm12b	100	86.224	ENSMFAG00000031376	LSM12	100	86.486	Macaca_fascicularis
ENSPKIG00000021058	lsm12b	65	74.713	ENSMMUG00000042106	-	100	74.713	Macaca_mulatta
ENSPKIG00000021058	lsm12b	100	86.224	ENSMMUG00000006804	LSM12	100	86.486	Macaca_mulatta
ENSPKIG00000021058	lsm12b	65	74.713	ENSMMUG00000038408	-	100	74.713	Macaca_mulatta
ENSPKIG00000021058	lsm12b	100	86.224	ENSMNEG00000030594	-	100	86.486	Macaca_nemestrina
ENSPKIG00000021058	lsm12b	100	86.224	ENSMLEG00000039934	LSM12	100	86.486	Mandrillus_leucophaeus
ENSPKIG00000021058	lsm12b	100	93.878	ENSMAMG00000004279	lsm12b	100	93.878	Mastacembelus_armatus
ENSPKIG00000021058	lsm12b	100	92.347	ENSMZEG00005005754	lsm12b	100	92.347	Maylandia_zebra
ENSPKIG00000021058	lsm12b	100	85.714	ENSMICG00000037219	LSM12	100	85.714	Microcebus_murinus
ENSPKIG00000021058	lsm12b	100	86.224	ENSMOCG00000019878	-	100	86.486	Microtus_ochrogaster
ENSPKIG00000021058	lsm12b	100	74.490	ENSMOCG00000017015	-	86	74.490	Microtus_ochrogaster
ENSPKIG00000021058	lsm12b	100	93.367	ENSMMOG00000020848	lsm12b	100	93.367	Mola_mola
ENSPKIG00000021058	lsm12b	100	93.367	ENSMALG00000007578	lsm12b	100	93.367	Monopterus_albus
ENSPKIG00000021058	lsm12b	100	85.714	MGP_CAROLIEiJ_G0017241	Lsm12	100	85.714	Mus_caroli
ENSPKIG00000021058	lsm12b	100	86.224	ENSMUSG00000020922	Lsm12	100	86.486	Mus_musculus
ENSPKIG00000021058	lsm12b	100	79.343	MGP_PahariEiJ_G0018371	Lsm12	100	86.486	Mus_pahari
ENSPKIG00000021058	lsm12b	100	85.714	MGP_SPRETEiJ_G0018084	Lsm12	100	86.207	Mus_spretus
ENSPKIG00000021058	lsm12b	100	86.735	ENSMLUG00000006391	LSM12	100	86.735	Myotis_lucifugus
ENSPKIG00000021058	lsm12b	100	59.606	ENSNGAG00000015429	-	100	59.606	Nannospalax_galili
ENSPKIG00000021058	lsm12b	100	86.224	ENSNGAG00000001870	Lsm12	100	86.486	Nannospalax_galili
ENSPKIG00000021058	lsm12b	100	92.347	ENSNBRG00000006266	lsm12b	100	92.347	Neolamprologus_brichardi
ENSPKIG00000021058	lsm12b	100	86.224	ENSNLEG00000005580	-	100	86.486	Nomascus_leucogenys
ENSPKIG00000021058	lsm12b	91	85.542	ENSMEUG00000007501	-	100	85.542	Notamacropus_eugenii
ENSPKIG00000021058	lsm12b	100	86.224	ENSOPRG00000008552	LSM12	100	86.224	Ochotona_princeps
ENSPKIG00000021058	lsm12b	99	85.052	ENSODEG00000017998	-	99	85.052	Octodon_degus
ENSPKIG00000021058	lsm12b	100	77.551	ENSODEG00000007886	-	74	77.551	Octodon_degus
ENSPKIG00000021058	lsm12b	100	92.347	ENSONIG00000007933	lsm12b	100	92.347	Oreochromis_niloticus
ENSPKIG00000021058	lsm12b	99	80.000	ENSOCUG00000024823	-	100	80.000	Oryctolagus_cuniculus
ENSPKIG00000021058	lsm12b	99	81.026	ENSOCUG00000021254	-	100	81.026	Oryctolagus_cuniculus
ENSPKIG00000021058	lsm12b	100	84.422	ENSOCUG00000008566	-	100	84.422	Oryctolagus_cuniculus
ENSPKIG00000021058	lsm12b	99	81.538	ENSOCUG00000027889	-	100	81.538	Oryctolagus_cuniculus
ENSPKIG00000021058	lsm12b	100	93.367	ENSORLG00000011310	lsm12b	100	93.367	Oryzias_latipes
ENSPKIG00000021058	lsm12b	100	93.367	ENSORLG00020002060	lsm12b	92	93.367	Oryzias_latipes_hni
ENSPKIG00000021058	lsm12b	100	93.367	ENSORLG00015001647	lsm12b	92	93.367	Oryzias_latipes_hsok
ENSPKIG00000021058	lsm12b	100	93.367	ENSOMEG00000006184	lsm12b	92	93.367	Oryzias_melastigma
ENSPKIG00000021058	lsm12b	100	85.714	ENSOGAG00000010489	LSM12	100	85.714	Otolemur_garnettii
ENSPKIG00000021058	lsm12b	100	83.168	ENSOARG00000006589	LSM12	100	83.168	Ovis_aries
ENSPKIG00000021058	lsm12b	100	76.531	ENSPPAG00000034974	-	100	76.531	Pan_paniscus
ENSPKIG00000021058	lsm12b	100	86.224	ENSPPRG00000023420	LSM12	100	86.224	Panthera_pardus
ENSPKIG00000021058	lsm12b	78	85.621	ENSPTIG00000012704	-	82	85.621	Panthera_tigris_altaica
ENSPKIG00000021058	lsm12b	73	84.685	ENSPTIG00000014850	-	100	84.685	Panthera_tigris_altaica
ENSPKIG00000021058	lsm12b	100	86.224	ENSPTRG00000009261	LSM12	100	86.486	Pan_troglodytes
ENSPKIG00000021058	lsm12b	100	86.224	ENSPANG00000021315	-	100	86.486	Papio_anubis
ENSPKIG00000021058	lsm12b	100	92.857	ENSPMGG00000021344	lsm12b	100	92.857	Periophthalmus_magnuspinnatus
ENSPKIG00000021058	lsm12b	100	86.224	ENSPEMG00000012199	Lsm12	100	86.486	Peromyscus_maniculatus_bairdii
ENSPKIG00000021058	lsm12b	91	67.470	ENSPMAG00000005461	lsm12a	99	68.000	Petromyzon_marinus
ENSPKIG00000021058	lsm12b	100	85.714	ENSPCIG00000020244	LSM12	100	85.714	Phascolarctos_cinereus
ENSPKIG00000021058	lsm12b	100	92.857	ENSPFOG00000015930	lsm12b	100	92.857	Poecilia_formosa
ENSPKIG00000021058	lsm12b	100	92.857	ENSPLAG00000021089	lsm12b	100	92.857	Poecilia_latipinna
ENSPKIG00000021058	lsm12b	100	92.857	ENSPMEG00000012961	lsm12b	100	92.857	Poecilia_mexicana
ENSPKIG00000021058	lsm12b	87	92.982	ENSPREG00000010236	lsm12b	95	92.982	Poecilia_reticulata
ENSPKIG00000021058	lsm12b	100	86.224	ENSPPYG00000008344	LSM12	100	86.224	Pongo_abelii
ENSPKIG00000021058	lsm12b	87	86.164	ENSPCAG00000008790	LSM12	100	86.164	Procavia_capensis
ENSPKIG00000021058	lsm12b	100	86.224	ENSPCOG00000027951	LSM12	100	86.486	Propithecus_coquereli
ENSPKIG00000021058	lsm12b	100	85.714	ENSPVAG00000013706	LSM12	100	85.714	Pteropus_vampyrus
ENSPKIG00000021058	lsm12b	100	92.347	ENSPNYG00000003386	lsm12b	100	92.347	Pundamilia_nyererei
ENSPKIG00000021058	lsm12b	100	86.224	ENSPNAG00000018435	lsm12a	100	86.224	Pygocentrus_nattereri
ENSPKIG00000021058	lsm12b	100	91.327	ENSPNAG00000004186	lsm12b	100	91.327	Pygocentrus_nattereri
ENSPKIG00000021058	lsm12b	100	86.224	ENSRNOG00000020894	Lsm12	100	86.224	Rattus_norvegicus
ENSPKIG00000021058	lsm12b	100	86.224	ENSRBIG00000027910	LSM12	100	86.486	Rhinopithecus_bieti
ENSPKIG00000021058	lsm12b	97	53.403	ENSRROG00000000537	-	97	53.403	Rhinopithecus_roxellana
ENSPKIG00000021058	lsm12b	100	86.224	ENSRROG00000045530	-	100	86.486	Rhinopithecus_roxellana
ENSPKIG00000021058	lsm12b	100	86.224	ENSSBOG00000025310	LSM12	100	86.486	Saimiri_boliviensis_boliviensis
ENSPKIG00000021058	lsm12b	81	83.544	ENSSHAG00000014914	LSM12	100	83.544	Sarcophilus_harrisii
ENSPKIG00000021058	lsm12b	100	92.347	ENSSFOG00015020392	lsm12a	100	92.347	Scleropages_formosus
ENSPKIG00000021058	lsm12b	100	93.367	ENSSFOG00015009612	lsm12	100	93.367	Scleropages_formosus
ENSPKIG00000021058	lsm12b	100	93.367	ENSSMAG00000008089	lsm12b	100	93.367	Scophthalmus_maximus
ENSPKIG00000021058	lsm12b	100	94.388	ENSSDUG00000012711	lsm12b	100	94.388	Seriola_dumerili
ENSPKIG00000021058	lsm12b	100	94.388	ENSSLDG00000007404	lsm12b	100	94.388	Seriola_lalandi_dorsalis
ENSPKIG00000021058	lsm12b	78	84.967	ENSSARG00000005537	LSM12	100	84.967	Sorex_araneus
ENSPKIG00000021058	lsm12b	100	85.204	ENSSPUG00000011984	LSM12	100	85.204	Sphenodon_punctatus
ENSPKIG00000021058	lsm12b	100	93.878	ENSSPAG00000017058	lsm12b	100	93.878	Stegastes_partitus
ENSPKIG00000021058	lsm12b	100	86.224	ENSSSCG00000032394	LSM12	100	86.224	Sus_scrofa
ENSPKIG00000021058	lsm12b	100	92.857	ENSTRUG00000007121	lsm12b	100	92.857	Takifugu_rubripes
ENSPKIG00000021058	lsm12b	100	93.367	ENSTNIG00000014436	lsm12b	100	93.367	Tetraodon_nigroviridis
ENSPKIG00000021058	lsm12b	100	85.714	ENSTBEG00000012523	-	100	85.714	Tupaia_belangeri
ENSPKIG00000021058	lsm12b	100	83.673	ENSTBEG00000012392	-	100	83.673	Tupaia_belangeri
ENSPKIG00000021058	lsm12b	100	86.224	ENSTTRG00000010433	LSM12	100	86.224	Tursiops_truncatus
ENSPKIG00000021058	lsm12b	100	86.224	ENSUAMG00000006313	LSM12	100	86.224	Ursus_americanus
ENSPKIG00000021058	lsm12b	81	82.911	ENSUMAG00000012987	LSM12	90	82.911	Ursus_maritimus
ENSPKIG00000021058	lsm12b	100	80.612	ENSVPAG00000011145	LSM12	100	80.612	Vicugna_pacos
ENSPKIG00000021058	lsm12b	100	86.224	ENSVVUG00000017581	LSM12	100	86.224	Vulpes_vulpes
ENSPKIG00000021058	lsm12b	82	62.500	ENSXETG00000003371	lsm12	77	62.500	Xenopus_tropicalis
ENSPKIG00000021058	lsm12b	100	92.857	ENSXCOG00000003994	lsm12b	100	92.857	Xiphophorus_couchianus
ENSPKIG00000021058	lsm12b	100	92.857	ENSXMAG00000020950	lsm12b	100	92.857	Xiphophorus_maculatus