EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSPKIG00000022335 (Gene tree)
Gene ID: -
Gene Symbol: prdm1b
Alias: -
Full Name: PR domain containing 1b%2C with ZNF domain
Gene Type: protein_coding
Species: Paramormyrops_kingsleyae
Status: putative
Strand: Minus strand
Length: 15350 bases
Position: chrPGUA01000028.1:195737-211086
Accession: ZDB-GENE-080618-2
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPKIP00000005922	zf-C2H2	PF00096.26	6.6e-17	1	3
ENSPKIP00000005922	zf-C2H2	PF00096.26	6.6e-17	2	3
ENSPKIP00000005922	zf-C2H2	PF00096.26	6.6e-17	3	3
ENSPKIP00000005932	zf-C2H2	PF00096.26	6.9e-17	1	3
ENSPKIP00000005932	zf-C2H2	PF00096.26	6.9e-17	2	3
ENSPKIP00000005932	zf-C2H2	PF00096.26	6.9e-17	3	3
ENSPKIP00000005922	zf-met	PF12874.7	6e-06	1	1
ENSPKIP00000005932	zf-met	PF12874.7	7.2e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPKIT00000029937	-	1926	-	ENSPKIP00000005922	641 (aa)	-	-
ENSPKIT00000029948	-	1956	-	ENSPKIP00000005932	651 (aa)	-	-

Gene Model

Click here to download ENSPKIG00000022335's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPKIG00000022335's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSPKIG00000022335	prdm1b	55	32.500	ENSPKIG00000020637	PRDM15	61	32.500

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPKIG00000022335	prdm1b	71	52.098	ENSAPOG00000014135	-	73	52.098	Acanthochromis_polyacanthus
ENSPKIG00000022335	prdm1b	75	47.276	ENSACIG00000014426	prdm1b	72	75.000	Amphilophus_citrinellus
ENSPKIG00000022335	prdm1b	75	55.311	ENSAOCG00000002230	prdm1b	96	54.167	Amphiprion_ocellaris
ENSPKIG00000022335	prdm1b	97	55.959	ENSAPEG00000019826	prdm1b	99	55.427	Amphiprion_percula
ENSPKIG00000022335	prdm1b	73	77.465	ENSATEG00000006924	prdm1b	99	48.232	Anabas_testudineus
ENSPKIG00000022335	prdm1b	62	55.513	ENSATEG00000021017	prdm1a	53	60.619	Anabas_testudineus
ENSPKIG00000022335	prdm1b	76	50.174	ENSACLG00000005487	prdm1b	89	49.301	Astatotilapia_calliptera
ENSPKIG00000022335	prdm1b	59	49.282	WBGene00003847	blmp-1	51	47.391	Caenorhabditis_elegans
ENSPKIG00000022335	prdm1b	77	48.705	ENSCSEG00000009707	prdm1a	52	61.792	Cynoglossus_semilaevis
ENSPKIG00000022335	prdm1b	97	54.648	ENSCVAG00000016746	prdm1b	99	54.571	Cyprinodon_variegatus
ENSPKIG00000022335	prdm1b	61	55.431	ENSCVAG00000019081	prdm1a	53	61.233	Cyprinodon_variegatus
ENSPKIG00000022335	prdm1b	82	50.734	ENSFHEG00000019848	prdm1b	99	50.247	Fundulus_heteroclitus
ENSPKIG00000022335	prdm1b	96	50.070	ENSGAFG00000016191	prdm1b	81	70.349	Gambusia_affinis
ENSPKIG00000022335	prdm1b	71	53.571	ENSGAFG00000013012	-	50	58.182	Gambusia_affinis
ENSPKIG00000022335	prdm1b	79	72.050	ENSGACG00000002716	prdm1b	76	71.176	Gasterosteus_aculeatus
ENSPKIG00000022335	prdm1b	76	50.436	ENSHBUG00000001475	prdm1b	94	49.648	Haplochromis_burtoni
ENSPKIG00000022335	prdm1b	81	47.961	ENSHCOG00000003617	prdm1b	98	47.308	Hippocampus_comes
ENSPKIG00000022335	prdm1b	85	72.222	ENSIPUG00000013740	prdm1b	76	72.222	Ictalurus_punctatus
ENSPKIG00000022335	prdm1b	81	47.973	ENSKMAG00000011218	prdm1b	91	48.841	Kryptolebias_marmoratus
ENSPKIG00000022335	prdm1b	62	57.055	ENSKMAG00000016247	-	50	57.642	Kryptolebias_marmoratus
ENSPKIG00000022335	prdm1b	65	55.805	ENSKMAG00000017597	prdm1a	56	60.793	Kryptolebias_marmoratus
ENSPKIG00000022335	prdm1b	86	77.358	ENSLBEG00000020955	prdm1b	79	80.282	Labrus_bergylta
ENSPKIG00000022335	prdm1b	79	69.375	ENSLOCG00000004978	prdm1b	72	68.421	Lepisosteus_oculatus
ENSPKIG00000022335	prdm1b	83	48.382	ENSMZEG00005026361	prdm1b	95	47.805	Maylandia_zebra
ENSPKIG00000022335	prdm1b	76	48.090	ENSMMOG00000013458	prdm1b	94	47.535	Mola_mola
ENSPKIG00000022335	prdm1b	68	54.795	ENSMALG00000000462	-	58	54.795	Monopterus_albus
ENSPKIG00000022335	prdm1b	71	75.000	ENSMALG00000011410	prdm1b	99	46.333	Monopterus_albus
ENSPKIG00000022335	prdm1b	74	74.214	ENSONIG00000013583	prdm1b	71	74.214	Oreochromis_niloticus
ENSPKIG00000022335	prdm1b	74	72.464	ENSORLG00000010025	prdm1b	78	72.464	Oryzias_latipes
ENSPKIG00000022335	prdm1b	65	73.529	ENSORLG00015009022	prdm1b	70	73.529	Oryzias_latipes_hsok
ENSPKIG00000022335	prdm1b	76	70.060	ENSPFOG00000003103	prdm1b	81	69.318	Poecilia_formosa
ENSPKIG00000022335	prdm1b	83	44.992	ENSPLAG00000018491	prdm1b	99	47.293	Poecilia_latipinna
ENSPKIG00000022335	prdm1b	82	48.627	ENSPMEG00000007869	prdm1b	99	49.349	Poecilia_mexicana
ENSPKIG00000022335	prdm1b	97	50.272	ENSPREG00000011327	prdm1b	80	69.613	Poecilia_reticulata
ENSPKIG00000022335	prdm1b	78	53.488	ENSPVAG00000011732	PRDM1	50	60.360	Pteropus_vampyrus
ENSPKIG00000022335	prdm1b	92	41.890	ENSPNAG00000028442	prdm1a	56	63.889	Pygocentrus_nattereri
ENSPKIG00000022335	prdm1b	90	60.353	ENSSFOG00015021896	prdm1b	92	59.206	Scleropages_formosus
ENSPKIG00000022335	prdm1b	86	76.730	ENSSMAG00000020467	prdm1b	84	72.376	Scophthalmus_maximus
ENSPKIG00000022335	prdm1b	68	54.601	ENSSDUG00000000524	-	54	54.601	Seriola_dumerili
ENSPKIG00000022335	prdm1b	82	47.267	ENSSDUG00000020610	prdm1b	99	47.749	Seriola_dumerili
ENSPKIG00000022335	prdm1b	97	50.417	ENSSLDG00000021973	prdm1b	99	51.179	Seriola_lalandi_dorsalis
ENSPKIG00000022335	prdm1b	70	53.988	ENSSLDG00000001957	-	55	53.114	Seriola_lalandi_dorsalis
ENSPKIG00000022335	prdm1b	69	53.750	ENSSPAG00000009830	-	51	55.061	Stegastes_partitus
ENSPKIG00000022335	prdm1b	81	51.939	ENSSPAG00000000803	prdm1b	99	52.057	Stegastes_partitus
ENSPKIG00000022335	prdm1b	97	51.015	ENSXCOG00000018920	prdm1b	78	74.214	Xiphophorus_couchianus
ENSPKIG00000022335	prdm1b	97	50.744	ENSXMAG00000016765	prdm1b	77	73.585	Xiphophorus_maculatus