EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSPKIG00000022613 (Gene tree)
Gene ID: 111851107
Gene Symbol: CPSF6
Alias: -
Full Name: cleavage and polyadenylation specific factor 6
Gene Type: protein_coding
Species: Paramormyrops_kingsleyae
Status: putative
Strand: Plus strand
Length: 9044 bases
Position: chrPGUA01000104.1:1189880-1198923
Accession: 111851107
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPKIP00000006271	RRM_1	PF00076.22	1.4e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPKIT00000030293	CPSF6-201	1730	-	ENSPKIP00000006271	548 (aa)	XP_023681467	UPI000CD66096

Gene Model

Click here to download ENSPKIG00000022613's gene model file

Pathways

Pathway ID	Pathway Name	Source
pki03015	mRNA surveillance pathway	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSPKIG00000022613's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSPKIG00000022613	CPSF6	61	48.023	ENSPKIG00000018054	CPSF7	65	46.875

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPKIG00000022613	CPSF6	94	81.453	ENSG00000111605	CPSF6	88	84.211	Homo_sapiens
ENSPKIG00000022613	CPSF6	67	75.000	ENSG00000149532	CPSF7	100	49.669	Homo_sapiens
ENSPKIG00000022613	CPSF6	58	39.490	ENSAOCG00000012357	CPSF7	63	40.828	Amphiprion_ocellaris
ENSPKIG00000022613	CPSF6	58	40.252	ENSAPEG00000015375	CPSF7	63	40.828	Amphiprion_percula
ENSPKIG00000022613	CPSF6	95	61.877	ENSAMXG00000016745	CPSF6	87	93.976	Astyanax_mexicanus
ENSPKIG00000022613	CPSF6	74	59.843	ENSCJAG00000019282	CPSF7	80	57.692	Callithrix_jacchus
ENSPKIG00000022613	CPSF6	91	81.113	ENSCAFG00000000424	CPSF6	72	84.713	Canis_familiaris
ENSPKIG00000022613	CPSF6	91	81.076	ENSTSYG00000008591	CPSF6	64	93.258	Carlito_syrichta
ENSPKIG00000022613	CPSF6	68	53.333	ENSCGRG00000017954	Cpsf7	73	57.225	Cricetulus_griseus_crigri
ENSPKIG00000022613	CPSF6	51	39.779	ENSCSEG00000001956	CPSF7	57	44.755	Cynoglossus_semilaevis
ENSPKIG00000022613	CPSF6	70	35.321	ENSCVAG00000007392	CPSF7	66	44.138	Cyprinodon_variegatus
ENSPKIG00000022613	CPSF6	52	83.916	ENSDARG00000018618	cpsf6	52	82.168	Danio_rerio
ENSPKIG00000022613	CPSF6	74	60.630	ENSDNOG00000018517	CPSF7	80	58.333	Dasypus_novemcinctus
ENSPKIG00000022613	CPSF6	70	83.945	ENSETEG00000002097	CPSF6	65	84.018	Echinops_telfairi
ENSPKIG00000022613	CPSF6	67	76.250	ENSECAG00000018521	CPSF7	82	58.333	Equus_caballus
ENSPKIG00000022613	CPSF6	74	60.630	ENSFCAG00000013677	CPSF7	82	58.333	Felis_catus
ENSPKIG00000022613	CPSF6	71	47.222	ENSFALG00000011927	CPSF7	76	56.069	Ficedula_albicollis
ENSPKIG00000022613	CPSF6	52	83.721	ENSFHEG00000019693	cpsf6	53	75.585	Fundulus_heteroclitus
ENSPKIG00000022613	CPSF6	54	95.000	ENSGMOG00000012951	cpsf6	54	95.868	Gadus_morhua
ENSPKIG00000022613	CPSF6	63	54.749	ENSGALG00000040962	CPSF7	63	58.960	Gallus_gallus
ENSPKIG00000022613	CPSF6	94	87.476	ENSGACG00000019685	cpsf6	52	89.474	Gasterosteus_aculeatus
ENSPKIG00000022613	CPSF6	68	53.333	ENSHGLG00100013933	-	74	56.647	Heterocephalus_glaber_male
ENSPKIG00000022613	CPSF6	52	78.472	ENSHCOG00000014555	cpsf6	51	83.624	Hippocampus_comes
ENSPKIG00000022613	CPSF6	52	89.510	ENSKMAG00000014794	cpsf6	52	89.510	Kryptolebias_marmoratus
ENSPKIG00000022613	CPSF6	62	40.230	ENSLBEG00000000947	CPSF7	72	34.286	Labrus_bergylta
ENSPKIG00000022613	CPSF6	62	44.231	ENSLACG00000005542	CPSF7	69	44.231	Latimeria_chalumnae
ENSPKIG00000022613	CPSF6	67	93.373	ENSLOCG00000016190	cpsf6	66	94.578	Lepisosteus_oculatus
ENSPKIG00000022613	CPSF6	94	81.453	ENSLAFG00000030413	CPSF6	51	80.351	Loxodonta_africana
ENSPKIG00000022613	CPSF6	52	89.825	ENSMAMG00000010385	cpsf6	52	89.825	Mastacembelus_armatus
ENSPKIG00000022613	CPSF6	95	44.505	ENSMGAG00000004876	CPSF7	62	61.078	Meleagris_gallopavo
ENSPKIG00000022613	CPSF6	75	93.229	ENSMALG00000014908	cpsf6	79	94.382	Monopterus_albus
ENSPKIG00000022613	CPSF6	82	80.000	MGP_PahariEiJ_G0031253	Cpsf6	56	79.649	Mus_pahari
ENSPKIG00000022613	CPSF6	68	92.029	ENSMLUG00000028728	-	88	87.586	Myotis_lucifugus
ENSPKIG00000022613	CPSF6	51	75.887	ENSMLUG00000004172	-	52	76.241	Myotis_lucifugus
ENSPKIG00000022613	CPSF6	79	67.105	ENSODEG00000007109	-	67	66.250	Octodon_degus
ENSPKIG00000022613	CPSF6	95	41.772	ENSOCUG00000024726	CPSF7	71	56.069	Oryctolagus_cuniculus
ENSPKIG00000022613	CPSF6	74	34.074	ENSORLG00000006495	CPSF7	59	48.718	Oryzias_latipes
ENSPKIG00000022613	CPSF6	74	34.074	ENSORLG00020012657	CPSF7	59	48.718	Oryzias_latipes_hni
ENSPKIG00000022613	CPSF6	68	36.087	ENSORLG00015011091	CPSF7	59	48.718	Oryzias_latipes_hsok
ENSPKIG00000022613	CPSF6	95	40.835	ENSOARG00000012937	CPSF7	65	56.069	Ovis_aries
ENSPKIG00000022613	CPSF6	95	41.002	ENSPPRG00000008538	CPSF7	71	56.647	Panthera_pardus
ENSPKIG00000022613	CPSF6	94	81.453	ENSPANG00000011641	CPSF6	71	84.112	Papio_anubis
ENSPKIG00000022613	CPSF6	51	43.151	ENSPMAG00000008077	-	68	49.468	Petromyzon_marinus
ENSPKIG00000022613	CPSF6	65	51.269	ENSPCIG00000002551	CPSF7	81	57.317	Phascolarctos_cinereus
ENSPKIG00000022613	CPSF6	52	89.236	ENSPREG00000004417	cpsf6	52	89.161	Poecilia_reticulata
ENSPKIG00000022613	CPSF6	52	89.474	ENSPNAG00000024098	CPSF6	52	89.474	Pygocentrus_nattereri
ENSPKIG00000022613	CPSF6	55	47.799	ENSPNAG00000015073	CPSF7	74	45.455	Pygocentrus_nattereri
ENSPKIG00000022613	CPSF6	68	52.821	ENSRNOG00000020668	Cpsf7	70	48.889	Rattus_norvegicus
ENSPKIG00000022613	CPSF6	74	59.843	ENSRBIG00000031429	CPSF7	82	57.692	Rhinopithecus_bieti
ENSPKIG00000022613	CPSF6	62	43.575	ENSSFOG00015010288	cpsf7	73	39.766	Scleropages_formosus
ENSPKIG00000022613	CPSF6	52	91.228	ENSSDUG00000005024	cpsf6	52	91.228	Seriola_dumerili
ENSPKIG00000022613	CPSF6	52	91.228	ENSSLDG00000009042	cpsf6	52	91.228	Seriola_lalandi_dorsalis
ENSPKIG00000022613	CPSF6	85	87.747	ENSSARG00000006743	CPSF6	67	94.350	Sorex_araneus
ENSPKIG00000022613	CPSF6	74	60.630	ENSSSCG00000013083	CPSF7	80	58.333	Sus_scrofa
ENSPKIG00000022613	CPSF6	63	50.556	ENSTGUG00000006513	CPSF7	74	56.216	Taeniopygia_guttata
ENSPKIG00000022613	CPSF6	94	85.135	ENSTRUG00000016461	cpsf6	52	85.614	Takifugu_rubripes
ENSPKIG00000022613	CPSF6	52	85.263	ENSTNIG00000007576	cpsf6	52	85.263	Tetraodon_nigroviridis
ENSPKIG00000022613	CPSF6	74	60.630	ENSVVUG00000004939	CPSF7	80	58.333	Vulpes_vulpes
ENSPKIG00000022613	CPSF6	97	41.894	ENSXETG00000006715	cpsf7	66	53.254	Xenopus_tropicalis