EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Orthologs

Description

Ensembl ID: ENSPKIG00000022807 (Gene tree)
Gene ID: 111836889
Gene Symbol: parn
Alias: -
Full Name: poly(A)-specific ribonuclease (deadenylation nuclease)
Gene Type: protein_coding
Species: Paramormyrops_kingsleyae
Status: putative
Strand: Plus strand
Length: 25344 bases
Position: chrPGUA01000059.1:1568168-1593511
Accession: ZDB-GENE-040426-880
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPKIP00000006629	R3H	PF01424.22	3.6e-05	1	1
ENSPKIP00000006680	RNA_bind	PF08675.11	6e-33	1	1
ENSPKIP00000006629	RNA_bind	PF08675.11	7.5e-33	1	1
ENSPKIP00000006629	CAF1	PF04857.20	9.1e-90	1	1
ENSPKIP00000006680	CAF1	PF04857.20	1.4e-89	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPKIT00000030658	-	3560	-	ENSPKIP00000006629	720 (aa)	-	-
ENSPKIT00000030710	-	1869	-	ENSPKIP00000006680	622 (aa)	-	-

Gene Model

Click here to download ENSPKIG00000022807's gene model file

Pathways

Pathway ID	Pathway Name	Source
pki03018	RNA degradation	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSPKIG00000022807's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPKIG00000022807	parn	95	67.532	ENSG00000140694	PARN	96	79.661	Homo_sapiens
ENSPKIG00000022807	parn	90	69.416	ENSAMEG00000011208	PARN	91	72.931	Ailuropoda_melanoleuca
ENSPKIG00000022807	parn	87	74.910	ENSACIG00000000619	parn	99	70.938	Amphilophus_citrinellus
ENSPKIG00000022807	parn	95	72.459	ENSAOCG00000003465	parn	99	70.043	Amphiprion_ocellaris
ENSPKIG00000022807	parn	77	75.911	ENSAPEG00000010661	parn	93	80.533	Amphiprion_percula
ENSPKIG00000022807	parn	96	70.043	ENSATEG00000004661	parn	99	69.943	Anabas_testudineus
ENSPKIG00000022807	parn	91	71.039	ENSAPLG00000013914	PARN	91	75.868	Anas_platyrhynchos
ENSPKIG00000022807	parn	91	70.152	ENSACAG00000004973	PARN	90	73.435	Anolis_carolinensis
ENSPKIG00000022807	parn	91	70.408	ENSANAG00000031516	PARN	96	79.661	Aotus_nancymaae
ENSPKIG00000022807	parn	90	76.256	ENSACLG00000004742	parn	99	70.672	Astatotilapia_calliptera
ENSPKIG00000022807	parn	96	68.966	ENSAMXG00000012390	parn	97	73.986	Astyanax_mexicanus
ENSPKIG00000022807	parn	91	67.007	ENSBTAG00000018097	PARN	90	73.359	Bos_taurus
ENSPKIG00000022807	parn	91	70.238	ENSCJAG00000015866	PARN	96	79.661	Callithrix_jacchus
ENSPKIG00000022807	parn	99	64.899	ENSCAFG00000018795	PARN	99	64.899	Canis_familiaris
ENSPKIG00000022807	parn	99	65.211	ENSCAFG00020024126	PARN	99	65.211	Canis_lupus_dingo
ENSPKIG00000022807	parn	91	69.558	ENSCHIG00000018143	PARN	91	73.921	Capra_hircus
ENSPKIG00000022807	parn	76	49.184	ENSCAPG00000007984	PARN	79	49.290	Cavia_aperea
ENSPKIG00000022807	parn	90	67.521	ENSCPOG00000002263	PARN	91	71.724	Cavia_porcellus
ENSPKIG00000022807	parn	91	70.238	ENSCCAG00000030367	PARN	96	79.661	Cebus_capucinus
ENSPKIG00000022807	parn	84	74.302	ENSCATG00000041368	PARN	95	78.719	Cercocebus_atys
ENSPKIG00000022807	parn	55	36.552	ENSCATG00000033196	PNLDC1	72	36.552	Cercocebus_atys
ENSPKIG00000022807	parn	95	66.829	ENSCLAG00000015406	PARN	91	73.838	Chinchilla_lanigera
ENSPKIG00000022807	parn	91	70.408	ENSCSAG00000008142	PARN	91	74.914	Chlorocebus_sabaeus
ENSPKIG00000022807	parn	91	52.560	ENSCHOG00000007014	PARN	91	57.439	Choloepus_hoffmanni
ENSPKIG00000022807	parn	83	67.701	ENSCPBG00000006609	PARN	90	74.664	Chrysemys_picta_bellii
ENSPKIG00000022807	parn	81	40.299	ENSCING00000010142	-	99	41.996	Ciona_intestinalis
ENSPKIG00000022807	parn	95	57.393	ENSCANG00000028849	-	96	79.661	Colobus_angolensis_palliatus
ENSPKIG00000022807	parn	91	68.847	ENSCGRG00001012096	Parn	91	73.565	Cricetulus_griseus_chok1gshd
ENSPKIG00000022807	parn	91	68.847	ENSCGRG00000004939	Parn	91	73.565	Cricetulus_griseus_crigri
ENSPKIG00000022807	parn	96	67.283	ENSCSEG00000002064	parn	100	68.182	Cynoglossus_semilaevis
ENSPKIG00000022807	parn	92	73.129	ENSCVAG00000014848	parn	99	68.848	Cyprinodon_variegatus
ENSPKIG00000022807	parn	96	64.419	ENSDARG00000102634	parn	100	76.364	Danio_rerio
ENSPKIG00000022807	parn	95	68.130	ENSDNOG00000000833	PARN	98	76.302	Dasypus_novemcinctus
ENSPKIG00000022807	parn	66	68.354	ENSETEG00000014828	-	69	73.384	Echinops_telfairi
ENSPKIG00000022807	parn	69	30.531	ENSEBUG00000008118	PNLDC1	86	30.453	Eptatretus_burgeri
ENSPKIG00000022807	parn	84	73.333	ENSEASG00005011400	PARN	91	74.221	Equus_asinus_asinus
ENSPKIG00000022807	parn	84	72.963	ENSECAG00000017792	PARN	91	73.875	Equus_caballus
ENSPKIG00000022807	parn	54	34.483	ENSECAG00000012898	PNLDC1	69	34.483	Equus_caballus
ENSPKIG00000022807	parn	83	61.538	ENSEEUG00000010370	PARN	84	61.538	Erinaceus_europaeus
ENSPKIG00000022807	parn	90	74.956	ENSELUG00000013139	parn	90	69.504	Esox_lucius
ENSPKIG00000022807	parn	99	65.211	ENSFCAG00000044961	PARN	98	77.966	Felis_catus
ENSPKIG00000022807	parn	91	71.066	ENSFALG00000003911	PARN	90	75.993	Ficedula_albicollis
ENSPKIG00000022807	parn	89	68.157	ENSFDAG00000009234	PARN	99	63.651	Fukomys_damarensis
ENSPKIG00000022807	parn	91	68.213	ENSFHEG00000013738	parn	92	83.051	Fundulus_heteroclitus
ENSPKIG00000022807	parn	87	75.360	ENSGMOG00000003231	parn	99	79.673	Gadus_morhua
ENSPKIG00000022807	parn	93	68.966	ENSGALG00000003091	PARN	92	74.486	Gallus_gallus
ENSPKIG00000022807	parn	96	67.188	ENSGAFG00000011061	parn	99	67.472	Gambusia_affinis
ENSPKIG00000022807	parn	94	71.476	ENSGACG00000019501	parn	96	74.958	Gasterosteus_aculeatus
ENSPKIG00000022807	parn	95	67.695	ENSGGOG00000025224	PARN	91	79.661	Gorilla_gorilla
ENSPKIG00000022807	parn	90	76.256	ENSHBUG00000017906	parn	94	79.181	Haplochromis_burtoni
ENSPKIG00000022807	parn	99	64.651	ENSHGLG00000010886	PARN	99	65.062	Heterocephalus_glaber_female
ENSPKIG00000022807	parn	99	64.651	ENSHGLG00100014659	PARN	99	65.062	Heterocephalus_glaber_male
ENSPKIG00000022807	parn	86	70.270	ENSHCOG00000008683	parn	94	75.551	Hippocampus_comes
ENSPKIG00000022807	parn	90	67.491	ENSIPUG00000012401	parn	96	62.187	Ictalurus_punctatus
ENSPKIG00000022807	parn	91	69.113	ENSSTOG00000007519	PARN	90	74.081	Ictidomys_tridecemlineatus
ENSPKIG00000022807	parn	95	66.446	ENSJJAG00000023049	Parn	93	72.479	Jaculus_jaculus
ENSPKIG00000022807	parn	96	69.088	ENSKMAG00000009462	parn	99	68.946	Kryptolebias_marmoratus
ENSPKIG00000022807	parn	91	74.742	ENSLBEG00000009167	parn	99	73.333	Labrus_bergylta
ENSPKIG00000022807	parn	80	69.396	ENSLACG00000004207	PARN	100	74.941	Latimeria_chalumnae
ENSPKIG00000022807	parn	94	77.667	ENSLOCG00000000715	parn	97	76.214	Lepisosteus_oculatus
ENSPKIG00000022807	parn	91	69.811	ENSLAFG00000015036	PARN	91	74.216	Loxodonta_africana
ENSPKIG00000022807	parn	91	67.295	ENSMFAG00000044852	PARN	96	79.661	Macaca_fascicularis
ENSPKIG00000022807	parn	95	67.857	ENSMMUG00000018849	PARN	96	79.661	Macaca_mulatta
ENSPKIG00000022807	parn	91	70.408	ENSMNEG00000045108	PARN	96	79.661	Macaca_nemestrina
ENSPKIG00000022807	parn	91	70.578	ENSMLEG00000031743	PARN	96	79.661	Mandrillus_leucophaeus
ENSPKIG00000022807	parn	91	74.310	ENSMAMG00000006939	parn	99	69.373	Mastacembelus_armatus
ENSPKIG00000022807	parn	90	76.256	ENSMZEG00005013590	parn	93	79.747	Maylandia_zebra
ENSPKIG00000022807	parn	89	68.547	ENSMGAG00000001004	PARN	91	72.539	Meleagris_gallopavo
ENSPKIG00000022807	parn	53	34.932	ENSMAUG00000012298	Pnldc1	68	34.932	Mesocricetus_auratus
ENSPKIG00000022807	parn	91	63.514	ENSMAUG00000008025	Parn	91	68.034	Mesocricetus_auratus
ENSPKIG00000022807	parn	91	69.558	ENSMICG00000016053	PARN	97	77.966	Microcebus_murinus
ENSPKIG00000022807	parn	78	73.293	ENSMOCG00000022211	Parn	100	77.846	Microtus_ochrogaster
ENSPKIG00000022807	parn	87	76.965	ENSMMOG00000011333	parn	90	78.364	Mola_mola
ENSPKIG00000022807	parn	78	74.701	ENSMODG00000004915	PARN	99	79.839	Monodelphis_domestica
ENSPKIG00000022807	parn	87	75.627	ENSMALG00000019426	parn	94	79.891	Monopterus_albus
ENSPKIG00000022807	parn	91	68.259	MGP_CAROLIEiJ_G0020466	Parn	91	72.696	Mus_caroli
ENSPKIG00000022807	parn	91	67.802	ENSMUSG00000022685	Parn	100	75.610	Mus_musculus
ENSPKIG00000022807	parn	91	67.802	MGP_PahariEiJ_G0016172	Parn	91	72.222	Mus_pahari
ENSPKIG00000022807	parn	91	68.151	MGP_SPRETEiJ_G0021361	Parn	91	72.569	Mus_spretus
ENSPKIG00000022807	parn	89	70.537	ENSMPUG00000014464	PARN	99	65.278	Mustela_putorius_furo
ENSPKIG00000022807	parn	78	73.000	ENSMLUG00000005414	PARN	100	77.530	Myotis_lucifugus
ENSPKIG00000022807	parn	87	76.619	ENSNBRG00000006805	parn	93	79.385	Neolamprologus_brichardi
ENSPKIG00000022807	parn	95	67.857	ENSNLEG00000010241	PARN	96	79.661	Nomascus_leucogenys
ENSPKIG00000022807	parn	63	72.491	ENSMEUG00000008178	-	74	65.574	Notamacropus_eugenii
ENSPKIG00000022807	parn	88	65.202	ENSOPRG00000012187	PARN	91	68.761	Ochotona_princeps
ENSPKIG00000022807	parn	84	67.041	ENSODEG00000001617	PARN	90	67.365	Octodon_degus
ENSPKIG00000022807	parn	96	71.336	ENSONIG00000000151	parn	99	70.429	Oreochromis_niloticus
ENSPKIG00000022807	parn	89	68.954	ENSOCUG00000000322	PARN	91	73.391	Oryctolagus_cuniculus
ENSPKIG00000022807	parn	92	73.469	ENSORLG00020010313	parn	99	69.044	Oryzias_latipes_hni
ENSPKIG00000022807	parn	92	73.129	ENSORLG00015000300	parn	99	68.902	Oryzias_latipes_hsok
ENSPKIG00000022807	parn	96	69.757	ENSOMEG00000019555	parn	97	73.182	Oryzias_melastigma
ENSPKIG00000022807	parn	78	73.146	ENSOGAG00000014626	PARN	100	77.890	Otolemur_garnettii
ENSPKIG00000022807	parn	78	74.200	ENSOARG00000007574	PARN	100	78.947	Ovis_aries
ENSPKIG00000022807	parn	95	67.370	ENSPPAG00000031438	PARN	96	79.661	Pan_paniscus
ENSPKIG00000022807	parn	99	65.211	ENSPPRG00000018583	PARN	98	77.966	Panthera_pardus
ENSPKIG00000022807	parn	99	65.211	ENSPTIG00000012135	PARN	98	77.966	Panthera_tigris_altaica
ENSPKIG00000022807	parn	95	67.370	ENSPTRG00000007792	PARN	96	79.661	Pan_troglodytes
ENSPKIG00000022807	parn	95	65.584	ENSPANG00000020099	PARN	96	79.661	Papio_anubis
ENSPKIG00000022807	parn	92	70.202	ENSPSIG00000014804	PARN	100	66.000	Pelodiscus_sinensis
ENSPKIG00000022807	parn	87	72.093	ENSPMGG00000014431	parn	85	70.569	Periophthalmus_magnuspinnatus
ENSPKIG00000022807	parn	91	67.185	ENSPEMG00000018439	Parn	91	72.028	Peromyscus_maniculatus_bairdii
ENSPKIG00000022807	parn	82	64.639	ENSPMAG00000003956	parn	99	67.500	Petromyzon_marinus
ENSPKIG00000022807	parn	67	67.689	ENSPCIG00000001259	PARN	91	77.966	Phascolarctos_cinereus
ENSPKIG00000022807	parn	96	67.094	ENSPFOG00000012823	parn	99	67.994	Poecilia_formosa
ENSPKIG00000022807	parn	96	67.236	ENSPLAG00000006395	parn	99	68.137	Poecilia_latipinna
ENSPKIG00000022807	parn	96	66.809	ENSPMEG00000007711	parn	99	67.710	Poecilia_mexicana
ENSPKIG00000022807	parn	96	67.094	ENSPREG00000000147	parn	99	67.994	Poecilia_reticulata
ENSPKIG00000022807	parn	95	67.152	ENSPPYG00000007123	PARN	91	74.144	Pongo_abelii
ENSPKIG00000022807	parn	86	62.770	ENSPCAG00000001741	PARN	90	65.511	Procavia_capensis
ENSPKIG00000022807	parn	95	64.715	ENSPCOG00000019292	PARN	96	77.966	Propithecus_coquereli
ENSPKIG00000022807	parn	90	66.609	ENSPVAG00000002547	PARN	91	71.154	Pteropus_vampyrus
ENSPKIG00000022807	parn	90	76.256	ENSPNYG00000006835	parn	93	77.034	Pundamilia_nyererei
ENSPKIG00000022807	parn	90	68.664	ENSPNAG00000018905	parn	99	68.203	Pygocentrus_nattereri
ENSPKIG00000022807	parn	91	67.736	ENSRNOG00000002912	Parn	94	82.105	Rattus_norvegicus
ENSPKIG00000022807	parn	91	69.363	ENSSBOG00000034726	PARN	96	79.661	Saimiri_boliviensis_boliviensis
ENSPKIG00000022807	parn	66	72.749	ENSSHAG00000008493	PARN	93	78.846	Sarcophilus_harrisii
ENSPKIG00000022807	parn	97	78.268	ENSSFOG00015014165	parn	98	81.879	Scleropages_formosus
ENSPKIG00000022807	parn	96	68.272	ENSSMAG00000000685	parn	99	67.989	Scophthalmus_maximus
ENSPKIG00000022807	parn	96	69.986	ENSSDUG00000014555	parn	99	70.270	Seriola_dumerili
ENSPKIG00000022807	parn	69	73.409	ENSSARG00000014339	PARN	75	79.032	Sorex_araneus
ENSPKIG00000022807	parn	91	69.882	ENSSPUG00000007719	PARN	91	75.000	Sphenodon_punctatus
ENSPKIG00000022807	parn	95	72.536	ENSSPAG00000007095	parn	99	70.714	Stegastes_partitus
ENSPKIG00000022807	parn	90	70.209	ENSSSCG00000007878	PARN	81	73.368	Sus_scrofa
ENSPKIG00000022807	parn	90	71.138	ENSTGUG00000004971	PARN	98	71.520	Taeniopygia_guttata
ENSPKIG00000022807	parn	90	74.611	ENSTNIG00000008252	parn	96	76.307	Tetraodon_nigroviridis
ENSPKIG00000022807	parn	86	54.367	ENSTBEG00000010407	PARN	90	61.877	Tupaia_belangeri
ENSPKIG00000022807	parn	55	33.000	ENSTBEG00000009131	PNLDC1	67	33.000	Tupaia_belangeri
ENSPKIG00000022807	parn	94	62.829	ENSTTRG00000002843	PARN	90	69.542	Tursiops_truncatus
ENSPKIG00000022807	parn	69	67.972	ENSUAMG00000008283	PARN	94	65.596	Ursus_americanus
ENSPKIG00000022807	parn	90	70.052	ENSUMAG00000004527	PARN	91	73.575	Ursus_maritimus
ENSPKIG00000022807	parn	94	65.132	ENSVPAG00000008968	PARN	94	71.354	Vicugna_pacos
ENSPKIG00000022807	parn	99	65.116	ENSVVUG00000019509	PARN	99	65.367	Vulpes_vulpes
ENSPKIG00000022807	parn	97	66.508	ENSXETG00000010994	parn	100	77.905	Xenopus_tropicalis
ENSPKIG00000022807	parn	90	69.097	ENSXCOG00000015990	parn	99	71.667	Xiphophorus_couchianus
ENSPKIG00000022807	parn	91	73.196	ENSXMAG00000014783	parn	99	68.324	Xiphophorus_maculatus