EuRBPDB

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  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • Pathways
  • PPI
  • Paralogs
  • Orthologs
Description
Ensembl ID
ENSPKIG00000023646 (Gene tree)
Gene ID
111851204
Gene Symbol
cpsf3
Alias
-
Full Name
cleavage and polyadenylation specific factor 3
Gene Type
protein_coding
Species
Paramormyrops_kingsleyae
Status
putative
Strand
Minus strand
Length
12717 bases
Position
chrPGUA01000219.1:1121316-1134032
Accession
111851204
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSPKIP00000007952CPSF73-100_CPF11718.82.4e-5111
ENSPKIP00000007976CPSF73-100_CPF11718.82.8e-5111
ENSPKIP00000008000CPSF73-100_CPF11718.85.6e-5011
ENSPKIP00000007952Beta-CaspPF10996.85.9e-3411
ENSPKIP00000007976Beta-CaspPF10996.86.9e-3411
ENSPKIP00000008000Beta-CaspPF10996.87.5e-3411
ENSPKIP00000007976Lactamase_BPF00753.271.8e-1811
ENSPKIP00000007952Lactamase_BPF00753.273.8e-1511
ENSPKIP00000008000Lactamase_BPF00753.274.2e-0811
ENSPKIP00000008000RMMBLPF07521.121.9e-2111
ENSPKIP00000007952RMMBLPF07521.122e-2111
ENSPKIP00000007976RMMBLPF07521.122.2e-2111
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSPKIT00000032071-1905-ENSPKIP00000008000634 (aa)--
ENSPKIT00000032047-2280-ENSPKIP00000007976690 (aa)XP_023681670UPI000CD66C67
ENSPKIT00000032023-2745-ENSPKIP00000007952646 (aa)--
Gene Model
Click here to download ENSPKIG00000023646's gene model file
Pathways
Pathway IDPathway NameSource
pki03015mRNA surveillance pathwayKEGG
Protein-Protein Interaction (PPI)

Clik here to download ENSPKIG00000023646's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSPKIG00000023646cpsf38534.342ENSPKIG00000008091ints119535.144
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSPKIG00000023646cpsf39989.302ENSG00000119203CPSF3100100.000Homo_sapiens
ENSPKIG00000023646cpsf37497.839ENSAPOG00000012241CPSF39197.839Acanthochromis_polyacanthus
ENSPKIG00000023646cpsf310088.551ENSAPOG00000022087cpsf310088.551Acanthochromis_polyacanthus
ENSPKIG00000023646cpsf39989.457ENSAMEG00000008493CPSF39989.706Ailuropoda_melanoleuca
ENSPKIG00000023646cpsf310085.871ENSACIG00000009846cpsf310085.871Amphilophus_citrinellus
ENSPKIG00000023646cpsf310089.796ENSACIG00000023663CPSF310089.796Amphilophus_citrinellus
ENSPKIG00000023646cpsf310091.304ENSAOCG00000010077CPSF310091.304Amphiprion_ocellaris
ENSPKIG00000023646cpsf310088.696ENSAOCG00000022056cpsf310089.809Amphiprion_ocellaris
ENSPKIG00000023646cpsf310091.304ENSAPEG00000021167CPSF310091.304Amphiprion_percula
ENSPKIG00000023646cpsf310088.696ENSAPEG00000019526cpsf39989.954Amphiprion_percula
ENSPKIG00000023646cpsf39988.953ENSATEG00000003959cpsf39988.953Anabas_testudineus
ENSPKIG00000023646cpsf310086.232ENSATEG00000014525CPSF310086.232Anabas_testudineus
ENSPKIG00000023646cpsf39989.147ENSAPLG00000006941CPSF39889.104Anas_platyrhynchos
ENSPKIG00000023646cpsf39886.751ENSACAG00000001759CPSF39986.751Anolis_carolinensis
ENSPKIG00000023646cpsf39984.651ENSANAG00000031254CPSF39984.985Aotus_nancymaae
ENSPKIG00000023646cpsf310087.926ENSACLG00000014484cpsf39988.288Astatotilapia_calliptera
ENSPKIG00000023646cpsf310089.953ENSACLG00000018846CPSF310089.953Astatotilapia_calliptera
ENSPKIG00000023646cpsf310091.304ENSAMXG00000004786cpsf310091.304Astyanax_mexicanus
ENSPKIG00000023646cpsf39989.457ENSBTAG00000019735CPSF39989.706Bos_taurus
ENSPKIG00000023646cpsf39158.472WBGene00013460cpsf-38958.360Caenorhabditis_elegans
ENSPKIG00000023646cpsf39989.147ENSCJAG00000006276CPSF39989.412Callithrix_jacchus
ENSPKIG00000023646cpsf39989.457ENSCAFG00000003375CPSF39589.706Canis_familiaris
ENSPKIG00000023646cpsf39091.237ENSCAFG00020026799CPSF39991.410Canis_lupus_dingo
ENSPKIG00000023646cpsf39989.457ENSCHIG00000013973CPSF39989.706Capra_hircus
ENSPKIG00000023646cpsf39989.302ENSTSYG00000002967CPSF39989.559Carlito_syrichta
ENSPKIG00000023646cpsf39988.992ENSCAPG00000013851CPSF39989.323Cavia_aperea
ENSPKIG00000023646cpsf39988.992ENSCPOG00000011299CPSF39989.265Cavia_porcellus
ENSPKIG00000023646cpsf39989.147ENSCCAG00000036730CPSF39989.489Cebus_capucinus
ENSPKIG00000023646cpsf39987.442ENSCATG00000014770CPSF39993.610Cercocebus_atys
ENSPKIG00000023646cpsf39989.147ENSCLAG00000002727CPSF39989.412Chinchilla_lanigera
ENSPKIG00000023646cpsf39980.930ENSCSAG00000007125CPSF39981.618Chlorocebus_sabaeus
ENSPKIG00000023646cpsf385100.000ENSCHOG00000000180CPSF38564.261Choloepus_hoffmanni
ENSPKIG00000023646cpsf39988.837ENSCPBG00000014074CPSF39988.679Chrysemys_picta_bellii
ENSPKIG00000023646cpsf39968.049ENSCING00000007214-9867.883Ciona_intestinalis
ENSPKIG00000023646cpsf39978.582ENSCANG00000034435CPSF39979.386Colobus_angolensis_palliatus
ENSPKIG00000023646cpsf39988.837ENSCGRG00001013134Cpsf39989.118Cricetulus_griseus_chok1gshd
ENSPKIG00000023646cpsf39988.837ENSCGRG00000018319Cpsf39989.118Cricetulus_griseus_crigri
ENSPKIG00000023646cpsf310090.108ENSCSEG00000002021CPSF310090.108Cynoglossus_semilaevis
ENSPKIG00000023646cpsf310091.159ENSCVAG00000015067CPSF310091.159Cyprinodon_variegatus
ENSPKIG00000023646cpsf35074.448ENSCVAG00000022039-9474.448Cyprinodon_variegatus
ENSPKIG00000023646cpsf310090.580ENSDARG00000027649cpsf310090.580Danio_rerio
ENSPKIG00000023646cpsf39988.080ENSDNOG00000008940CPSF39588.399Dasypus_novemcinctus
ENSPKIG00000023646cpsf39590.065ENSDORG00000014263Cpsf39990.293Dipodomys_ordii
ENSPKIG00000023646cpsf310065.951FBgn0261065Cpsf739966.138Drosophila_melanogaster
ENSPKIG00000023646cpsf39580.261ENSETEG00000003893CPSF39977.812Echinops_telfairi
ENSPKIG00000023646cpsf39977.108ENSEBUG00000009018cpsf39977.119Eptatretus_burgeri
ENSPKIG00000023646cpsf39989.457ENSEASG00005003970CPSF39989.706Equus_asinus_asinus
ENSPKIG00000023646cpsf39989.457ENSECAG00000019911CPSF39990.717Equus_caballus
ENSPKIG00000023646cpsf39874.559ENSEEUG00000015422CPSF39974.559Erinaceus_europaeus
ENSPKIG00000023646cpsf39993.469ENSELUG00000013775cpsf39993.469Esox_lucius
ENSPKIG00000023646cpsf39989.457ENSFCAG00000007852CPSF39989.706Felis_catus
ENSPKIG00000023646cpsf39989.457ENSFALG00000006572CPSF39989.457Ficedula_albicollis
ENSPKIG00000023646cpsf39988.527ENSFDAG00000006317CPSF39988.824Fukomys_damarensis
ENSPKIG00000023646cpsf36471.463ENSFHEG00000012186CPSF310071.776Fundulus_heteroclitus
ENSPKIG00000023646cpsf310087.536ENSFHEG00000014774cpsf310087.536Fundulus_heteroclitus
ENSPKIG00000023646cpsf310088.406ENSGMOG00000003157cpsf310088.406Gadus_morhua
ENSPKIG00000023646cpsf39988.921ENSGALG00000016424CPSF39988.921Gallus_gallus
ENSPKIG00000023646cpsf310086.120ENSGAFG00000019449cpsf310086.120Gambusia_affinis
ENSPKIG00000023646cpsf310091.594ENSGAFG00000008016CPSF310091.594Gambusia_affinis
ENSPKIG00000023646cpsf37385.225ENSGAGG00000025583CPSF39385.225Gopherus_agassizii
ENSPKIG00000023646cpsf39889.100ENSGGOG00000001757CPSF39198.283Gorilla_gorilla
ENSPKIG00000023646cpsf310088.116ENSHBUG00000001188cpsf310088.116Haplochromis_burtoni
ENSPKIG00000023646cpsf36484.864ENSHBUG00000014332CPSF310084.864Haplochromis_burtoni
ENSPKIG00000023646cpsf39988.837ENSHGLG00000000666CPSF39989.118Heterocephalus_glaber_female
ENSPKIG00000023646cpsf39988.837ENSHGLG00100007765CPSF39989.118Heterocephalus_glaber_male
ENSPKIG00000023646cpsf39987.064ENSHCOG00000007251cpsf39987.064Hippocampus_comes
ENSPKIG00000023646cpsf39990.062ENSHCOG00000015957CPSF39989.826Hippocampus_comes
ENSPKIG00000023646cpsf310090.725ENSIPUG00000023488cpsf310090.725Ictalurus_punctatus
ENSPKIG00000023646cpsf39988.992ENSSTOG00000004476CPSF39989.265Ictidomys_tridecemlineatus
ENSPKIG00000023646cpsf39988.527ENSJJAG00000023415Cpsf39988.824Jaculus_jaculus
ENSPKIG00000023646cpsf310090.870ENSKMAG00000007317CPSF310090.870Kryptolebias_marmoratus
ENSPKIG00000023646cpsf310087.826ENSKMAG00000002806cpsf310087.826Kryptolebias_marmoratus
ENSPKIG00000023646cpsf39592.007ENSLBEG00000013492CPSF39991.781Labrus_bergylta
ENSPKIG00000023646cpsf39982.003ENSLBEG00000020569cpsf39682.003Labrus_bergylta
ENSPKIG00000023646cpsf35884.324ENSLBEG00000015018-9984.324Labrus_bergylta
ENSPKIG00000023646cpsf310082.200ENSLACG00000008308CPSF310082.200Latimeria_chalumnae
ENSPKIG00000023646cpsf310092.929ENSLOCG00000016823cpsf310092.929Lepisosteus_oculatus
ENSPKIG00000023646cpsf39989.147ENSLAFG00000009467CPSF39988.348Loxodonta_africana
ENSPKIG00000023646cpsf39989.147ENSMFAG00000001339CPSF39495.426Macaca_fascicularis
ENSPKIG00000023646cpsf39989.147ENSMMUG00000018038CPSF39989.147Macaca_mulatta
ENSPKIG00000023646cpsf39993.467ENSMNEG00000039447CPSF39997.610Macaca_nemestrina
ENSPKIG00000023646cpsf39989.302ENSMLEG00000026825CPSF39298.073Mandrillus_leucophaeus
ENSPKIG00000023646cpsf310089.937ENSMAMG00000008835CPSF310089.937Mastacembelus_armatus
ENSPKIG00000023646cpsf310088.406ENSMAMG00000003076cpsf310088.406Mastacembelus_armatus
ENSPKIG00000023646cpsf310091.159ENSMZEG00005006258CPSF310091.159Maylandia_zebra
ENSPKIG00000023646cpsf310088.116ENSMZEG00005014358cpsf310088.116Maylandia_zebra
ENSPKIG00000023646cpsf39988.837ENSMGAG00000013995CPSF39989.173Meleagris_gallopavo
ENSPKIG00000023646cpsf35981.551ENSMAUG00000000166Cpsf39981.551Mesocricetus_auratus
ENSPKIG00000023646cpsf39984.006ENSMICG00000002363CPSF39984.536Microcebus_murinus
ENSPKIG00000023646cpsf39984.806ENSMOCG00000020067Cpsf39985.294Microtus_ochrogaster
ENSPKIG00000023646cpsf37980.142ENSMMOG00000011923CPSF38580.142Mola_mola
ENSPKIG00000023646cpsf39984.496ENSMMOG00000018212CPSF39884.496Mola_mola
ENSPKIG00000023646cpsf39988.190ENSMODG00000014703CPSF39988.501Monodelphis_domestica
ENSPKIG00000023646cpsf310088.406ENSMALG00000016416cpsf310088.406Monopterus_albus
ENSPKIG00000023646cpsf39886.385ENSMALG00000011474CPSF39986.385Monopterus_albus
ENSPKIG00000023646cpsf39988.837MGP_CAROLIEiJ_G0017640Cpsf39989.118Mus_caroli
ENSPKIG00000023646cpsf39988.837ENSMUSG00000054309Cpsf39698.305Mus_musculus
ENSPKIG00000023646cpsf39988.682MGP_PahariEiJ_G0029397Cpsf39988.971Mus_pahari
ENSPKIG00000023646cpsf39988.837MGP_SPRETEiJ_G0018481Cpsf39989.118Mus_spretus
ENSPKIG00000023646cpsf39989.868ENSMPUG00000013213CPSF39989.868Mustela_putorius_furo
ENSPKIG00000023646cpsf39989.009ENSMLUG00000010636CPSF39989.280Myotis_lucifugus
ENSPKIG00000023646cpsf39988.682ENSNGAG00000019836Cpsf39988.971Nannospalax_galili
ENSPKIG00000023646cpsf310089.953ENSNBRG00000010525CPSF310089.953Neolamprologus_brichardi
ENSPKIG00000023646cpsf310087.681ENSNBRG00000004770cpsf310087.681Neolamprologus_brichardi
ENSPKIG00000023646cpsf39989.147ENSNLEG00000013359CPSF39198.283Nomascus_leucogenys
ENSPKIG00000023646cpsf39959.472ENSMEUG00000013117-9958.235Notamacropus_eugenii
ENSPKIG00000023646cpsf39980.910ENSOPRG00000008902CPSF39980.910Ochotona_princeps
ENSPKIG00000023646cpsf39989.302ENSODEG00000003129CPSF39989.559Octodon_degus
ENSPKIG00000023646cpsf310088.116ENSONIG00000018812cpsf310088.116Oreochromis_niloticus
ENSPKIG00000023646cpsf38887.900ENSOANG00000008577CPSF39987.900Ornithorhynchus_anatinus
ENSPKIG00000023646cpsf39989.147ENSOCUG00000003728CPSF39989.412Oryctolagus_cuniculus
ENSPKIG00000023646cpsf310086.232ENSORLG00000018854cpsf310086.232Oryzias_latipes
ENSPKIG00000023646cpsf310086.087ENSORLG00020013331cpsf310086.087Oryzias_latipes_hni
ENSPKIG00000023646cpsf310086.232ENSORLG00015011017cpsf310086.232Oryzias_latipes_hsok
ENSPKIG00000023646cpsf310086.377ENSOMEG00000010647cpsf39686.377Oryzias_melastigma
ENSPKIG00000023646cpsf39978.605ENSOGAG00000001680CPSF39979.412Otolemur_garnettii
ENSPKIG00000023646cpsf39989.457ENSOARG00000015073CPSF39989.706Ovis_aries
ENSPKIG00000023646cpsf39989.302ENSPPAG00000042457CPSF39198.283Pan_paniscus
ENSPKIG00000023646cpsf39989.457ENSPPRG00000016790CPSF39989.706Panthera_pardus
ENSPKIG00000023646cpsf39989.457ENSPTIG00000003920CPSF39989.971Panthera_tigris_altaica
ENSPKIG00000023646cpsf39989.302ENSPTRG00000011638CPSF39198.283Pan_troglodytes
ENSPKIG00000023646cpsf39989.147ENSPANG00000016798CPSF39495.426Papio_anubis
ENSPKIG00000023646cpsf39988.527ENSPSIG00000016144CPSF39987.812Pelodiscus_sinensis
ENSPKIG00000023646cpsf39982.595ENSPMGG00000006141-9887.831Periophthalmus_magnuspinnatus
ENSPKIG00000023646cpsf36483.623ENSPMGG00000015311CPSF310083.623Periophthalmus_magnuspinnatus
ENSPKIG00000023646cpsf39989.147ENSPEMG00000017668Cpsf39989.412Peromyscus_maniculatus_bairdii
ENSPKIG00000023646cpsf37990.459ENSPMAG00000004841cpsf310090.459Petromyzon_marinus
ENSPKIG00000023646cpsf39989.302ENSPCIG00000009823CPSF39890.031Phascolarctos_cinereus
ENSPKIG00000023646cpsf310091.022ENSPFOG00000010418-10091.014Poecilia_formosa
ENSPKIG00000023646cpsf310087.101ENSPFOG00000015922cpsf310087.101Poecilia_formosa
ENSPKIG00000023646cpsf310087.101ENSPLAG00000000882cpsf310087.101Poecilia_latipinna
ENSPKIG00000023646cpsf36485.432ENSPLAG00000021300-10085.926Poecilia_latipinna
ENSPKIG00000023646cpsf310087.101ENSPMEG00000018309cpsf310087.101Poecilia_mexicana
ENSPKIG00000023646cpsf310084.493ENSPREG00000004482CPSF310084.493Poecilia_reticulata
ENSPKIG00000023646cpsf310086.120ENSPREG00000014875cpsf310086.120Poecilia_reticulata
ENSPKIG00000023646cpsf39984.806ENSPPYG00000012666CPSF39985.294Pongo_abelii
ENSPKIG00000023646cpsf38468.750ENSPCAG00000015042CPSF38968.750Procavia_capensis
ENSPKIG00000023646cpsf38789.388ENSPCOG00000023016CPSF39790.000Propithecus_coquereli
ENSPKIG00000023646cpsf39989.574ENSPVAG00000005324CPSF39989.574Pteropus_vampyrus
ENSPKIG00000023646cpsf38894.245ENSPNYG00000021047CPSF39394.245Pundamilia_nyererei
ENSPKIG00000023646cpsf310088.116ENSPNYG00000004405cpsf310088.116Pundamilia_nyererei
ENSPKIG00000023646cpsf310091.449ENSPNAG00000023060cpsf310091.449Pygocentrus_nattereri
ENSPKIG00000023646cpsf310088.563ENSRNOG00000052418Cpsf39988.856Rattus_norvegicus
ENSPKIG00000023646cpsf39986.025ENSRBIG00000041615CPSF39985.891Rhinopithecus_bieti
ENSPKIG00000023646cpsf39989.302ENSRROG00000033792CPSF39989.559Rhinopithecus_roxellana
ENSPKIG00000023646cpsf39641.004YLR277CYSH19441.463Saccharomyces_cerevisiae
ENSPKIG00000023646cpsf39985.670ENSSBOG00000027263CPSF39786.099Saimiri_boliviensis_boliviensis
ENSPKIG00000023646cpsf39989.147ENSSHAG00000007024CPSF39989.412Sarcophilus_harrisii
ENSPKIG00000023646cpsf310097.833ENSSFOG00015002108cpsf310097.792Scleropages_formosus
ENSPKIG00000023646cpsf39590.538ENSSMAG00000020534CPSF39790.411Scophthalmus_maximus
ENSPKIG00000023646cpsf310090.725ENSSDUG00000018498CPSF310090.725Seriola_dumerili
ENSPKIG00000023646cpsf310088.696ENSSDUG00000002828cpsf39788.696Seriola_dumerili
ENSPKIG00000023646cpsf310090.725ENSSLDG00000005234CPSF310090.725Seriola_lalandi_dorsalis
ENSPKIG00000023646cpsf310088.696ENSSLDG00000008469cpsf39789.507Seriola_lalandi_dorsalis
ENSPKIG00000023646cpsf38984.586ENSSARG00000005186CPSF38984.586Sorex_araneus
ENSPKIG00000023646cpsf39986.287ENSSPUG00000015525CPSF39786.697Sphenodon_punctatus
ENSPKIG00000023646cpsf310088.116ENSSPAG00000018579cpsf310088.116Stegastes_partitus
ENSPKIG00000023646cpsf310091.159ENSSPAG00000002906CPSF310091.159Stegastes_partitus
ENSPKIG00000023646cpsf39989.457ENSSSCG00000020799CPSF39989.706Sus_scrofa
ENSPKIG00000023646cpsf39989.302ENSTGUG00000013016CPSF39989.691Taeniopygia_guttata
ENSPKIG00000023646cpsf36476.543ENSTRUG00000013905CPSF310076.543Takifugu_rubripes
ENSPKIG00000023646cpsf39987.373ENSTRUG00000007030cpsf39887.373Takifugu_rubripes
ENSPKIG00000023646cpsf38491.736ENSTBEG00000002707CPSF38491.736Tupaia_belangeri
ENSPKIG00000023646cpsf38675.000ENSTTRG00000000861CPSF38775.000Tursiops_truncatus
ENSPKIG00000023646cpsf39690.000ENSUAMG00000007535CPSF39490.229Ursus_americanus
ENSPKIG00000023646cpsf39989.457ENSUMAG00000003676CPSF39989.457Ursus_maritimus
ENSPKIG00000023646cpsf39588.436ENSVPAG00000008041CPSF310088.801Vicugna_pacos
ENSPKIG00000023646cpsf39989.457ENSVVUG00000002194CPSF39989.706Vulpes_vulpes
ENSPKIG00000023646cpsf39986.997ENSXETG00000008263cpsf39986.957Xenopus_tropicalis
ENSPKIG00000023646cpsf310086.812ENSXCOG00000019695cpsf310086.812Xiphophorus_couchianus
ENSPKIG00000023646cpsf35884.409ENSXCOG00000000957-8784.409Xiphophorus_couchianus
ENSPKIG00000023646cpsf310087.101ENSXMAG00000009784cpsf310087.101Xiphophorus_maculatus
ENSPKIG00000023646cpsf310091.304ENSXMAG00000027291CPSF310091.304Xiphophorus_maculatus

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