EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSPLAG00000000571 (Gene tree)
Gene ID: -
Gene Symbol: hfm1
Alias: -
Full Name: HFM1%2C ATP dependent DNA helicase homolog
Gene Type: protein_coding
Species: Poecilia_latipinna
Status: putative
Strand: Plus strand
Length: 14870 bases
Position: chrKQ546290.1:142398-157267
Accession: 106958279
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPLAP00000021571	ResIII	PF04851.15	4.4e-13	1	1
ENSPLAP00000021571	DEAD	PF00270.29	3.9e-27	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPLAT00000010641	-	3300	XM_015050087	ENSPLAP00000021571	1099 (aa)	XP_014905573	-

Gene Model

Click here to download ENSPLAG00000000571's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPLAG00000000571's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSPLAG00000000571	hfm1	71	32.014	ENSPLAG00000006711	snrnp200	72	32.014

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPLAG00000000571	hfm1	92	64.654	ENSG00000162669	HFM1	71	64.654	Homo_sapiens
ENSPLAG00000000571	hfm1	78	86.225	ENSAPOG00000005304	hfm1	96	86.225	Acanthochromis_polyacanthus
ENSPLAG00000000571	hfm1	92	63.365	ENSAMEG00000000432	HFM1	71	63.365	Ailuropoda_melanoleuca
ENSPLAG00000000571	hfm1	94	74.715	ENSACIG00000021553	hfm1	94	74.715	Amphilophus_citrinellus
ENSPLAG00000000571	hfm1	75	82.446	ENSAOCG00000022839	hfm1	96	85.354	Amphiprion_ocellaris
ENSPLAG00000000571	hfm1	72	85.696	ENSAPEG00000014316	hfm1	96	85.696	Amphiprion_percula
ENSPLAG00000000571	hfm1	92	80.573	ENSATEG00000019181	hfm1	85	79.955	Anabas_testudineus
ENSPLAG00000000571	hfm1	92	61.859	ENSAPLG00000013639	HFM1	71	61.859	Anas_platyrhynchos
ENSPLAG00000000571	hfm1	92	62.353	ENSANAG00000029513	HFM1	70	62.157	Aotus_nancymaae
ENSPLAG00000000571	hfm1	94	73.644	ENSACLG00000009033	hfm1	96	79.565	Astatotilapia_calliptera
ENSPLAG00000000571	hfm1	85	71.564	ENSAMXG00000006108	hfm1	66	71.564	Astyanax_mexicanus
ENSPLAG00000000571	hfm1	92	63.566	ENSBTAG00000020856	HFM1	71	63.566	Bos_taurus
ENSPLAG00000000571	hfm1	92	63.337	ENSCJAG00000001843	HFM1	71	63.337	Callithrix_jacchus
ENSPLAG00000000571	hfm1	92	63.592	ENSCAFG00000020187	HFM1	73	61.660	Canis_familiaris
ENSPLAG00000000571	hfm1	92	63.168	ENSTSYG00000014250	HFM1	71	63.168	Carlito_syrichta
ENSPLAG00000000571	hfm1	92	62.089	ENSCPOG00000007421	HFM1	73	62.089	Cavia_porcellus
ENSPLAG00000000571	hfm1	92	63.010	ENSCCAG00000033206	HFM1	72	62.095	Cebus_capucinus
ENSPLAG00000000571	hfm1	92	63.840	ENSCATG00000030987	HFM1	71	63.840	Cercocebus_atys
ENSPLAG00000000571	hfm1	85	65.032	ENSCLAG00000005173	HFM1	63	65.032	Chinchilla_lanigera
ENSPLAG00000000571	hfm1	58	73.099	ENSCHOG00000011824	-	50	73.099	Choloepus_hoffmanni
ENSPLAG00000000571	hfm1	63	52.089	ENSCSAVG00000005094	-	100	52.089	Ciona_savignyi
ENSPLAG00000000571	hfm1	92	58.080	ENSCGRG00001016995	Hfm1	74	58.080	Cricetulus_griseus_chok1gshd
ENSPLAG00000000571	hfm1	95	59.815	ENSCGRG00000017181	Hfm1	74	59.815	Cricetulus_griseus_crigri
ENSPLAG00000000571	hfm1	97	70.626	ENSCSEG00000017659	hfm1	98	70.626	Cynoglossus_semilaevis
ENSPLAG00000000571	hfm1	65	89.873	ENSCVAG00000005075	hfm1	86	89.873	Cyprinodon_variegatus
ENSPLAG00000000571	hfm1	76	71.807	ENSDARG00000104288	hfm1	75	71.807	Danio_rerio
ENSPLAG00000000571	hfm1	85	65.778	ENSDNOG00000004776	HFM1	63	65.778	Dasypus_novemcinctus
ENSPLAG00000000571	hfm1	92	60.456	ENSDORG00000014661	Hfm1	71	60.456	Dipodomys_ordii
ENSPLAG00000000571	hfm1	90	62.562	ENSEASG00005015424	HFM1	96	62.562	Equus_asinus_asinus
ENSPLAG00000000571	hfm1	92	61.603	ENSECAG00000024039	HFM1	72	61.603	Equus_caballus
ENSPLAG00000000571	hfm1	82	74.561	ENSELUG00000018944	hfm1	97	74.561	Esox_lucius
ENSPLAG00000000571	hfm1	92	63.523	ENSFCAG00000029116	HFM1	71	63.523	Felis_catus
ENSPLAG00000000571	hfm1	88	63.313	ENSFALG00000001781	HFM1	71	61.905	Ficedula_albicollis
ENSPLAG00000000571	hfm1	85	65.632	ENSFDAG00000020816	HFM1	63	65.632	Fukomys_damarensis
ENSPLAG00000000571	hfm1	84	70.802	ENSGMOG00000017436	hfm1	97	70.802	Gadus_morhua
ENSPLAG00000000571	hfm1	95	91.437	ENSGAFG00000018093	hfm1	99	91.437	Gambusia_affinis
ENSPLAG00000000571	hfm1	84	75.745	ENSGACG00000015686	hfm1	99	74.017	Gasterosteus_aculeatus
ENSPLAG00000000571	hfm1	92	64.557	ENSGGOG00000038524	HFM1	71	64.557	Gorilla_gorilla
ENSPLAG00000000571	hfm1	94	74.976	ENSHBUG00000007309	hfm1	97	74.976	Haplochromis_burtoni
ENSPLAG00000000571	hfm1	74	77.150	ENSHCOG00000019632	hfm1	97	77.150	Hippocampus_comes
ENSPLAG00000000571	hfm1	85	71.520	ENSIPUG00000017020	hfm1	92	72.024	Ictalurus_punctatus
ENSPLAG00000000571	hfm1	85	64.347	ENSJJAG00000017198	Hfm1	67	64.347	Jaculus_jaculus
ENSPLAG00000000571	hfm1	81	80.089	ENSKMAG00000002282	hfm1	91	80.089	Kryptolebias_marmoratus
ENSPLAG00000000571	hfm1	94	73.578	ENSLBEG00000006759	hfm1	96	79.327	Labrus_bergylta
ENSPLAG00000000571	hfm1	84	65.287	ENSLACG00000010698	HFM1	100	60.734	Latimeria_chalumnae
ENSPLAG00000000571	hfm1	94	65.757	ENSLOCG00000004931	hfm1	95	66.893	Lepisosteus_oculatus
ENSPLAG00000000571	hfm1	61	71.704	ENSLAFG00000015903	-	91	71.704	Loxodonta_africana
ENSPLAG00000000571	hfm1	92	61.240	ENSMFAG00000003649	HFM1	71	61.240	Macaca_fascicularis
ENSPLAG00000000571	hfm1	92	63.938	ENSMMUG00000006819	HFM1	71	63.938	Macaca_mulatta
ENSPLAG00000000571	hfm1	73	86.136	ENSMAMG00000004623	hfm1	97	81.356	Mastacembelus_armatus
ENSPLAG00000000571	hfm1	94	73.644	ENSMZEG00005004679	hfm1	96	79.565	Maylandia_zebra
ENSPLAG00000000571	hfm1	69	68.898	ENSMGAG00000008437	HFM1	95	68.898	Meleagris_gallopavo
ENSPLAG00000000571	hfm1	92	60.950	ENSMAUG00000018858	Hfm1	71	61.143	Mesocricetus_auratus
ENSPLAG00000000571	hfm1	92	62.959	ENSMICG00000037935	HFM1	71	62.959	Microcebus_murinus
ENSPLAG00000000571	hfm1	92	61.187	ENSMOCG00000014812	Hfm1	71	61.479	Microtus_ochrogaster
ENSPLAG00000000571	hfm1	81	78.114	ENSMMOG00000006148	hfm1	92	80.866	Mola_mola
ENSPLAG00000000571	hfm1	94	72.927	ENSMALG00000002401	hfm1	94	81.159	Monopterus_albus
ENSPLAG00000000571	hfm1	78	72.131	MGP_CAROLIEiJ_G0027496	Hfm1	61	72.131	Mus_caroli
ENSPLAG00000000571	hfm1	92	61.078	ENSMUSG00000043410	Hfm1	71	61.078	Mus_musculus
ENSPLAG00000000571	hfm1	92	61.613	MGP_PahariEiJ_G0017268	Hfm1	71	61.613	Mus_pahari
ENSPLAG00000000571	hfm1	92	61.569	MGP_SPRETEiJ_G0028495	Hfm1	71	61.569	Mus_spretus
ENSPLAG00000000571	hfm1	85	66.596	ENSMPUG00000004594	HFM1	63	66.596	Mustela_putorius_furo
ENSPLAG00000000571	hfm1	92	63.218	ENSMLUG00000010200	HFM1	71	63.218	Myotis_lucifugus
ENSPLAG00000000571	hfm1	93	71.143	ENSNBRG00000002910	hfm1	97	80.097	Neolamprologus_brichardi
ENSPLAG00000000571	hfm1	92	61.224	ENSNLEG00000010285	HFM1	71	61.224	Nomascus_leucogenys
ENSPLAG00000000571	hfm1	85	60.066	ENSMEUG00000015788	HFM1	65	60.570	Notamacropus_eugenii
ENSPLAG00000000571	hfm1	76	63.177	ENSOPRG00000013916	HFM1	58	63.177	Ochotona_princeps
ENSPLAG00000000571	hfm1	90	75.588	ENSONIG00000010590	hfm1	98	75.678	Oreochromis_niloticus
ENSPLAG00000000571	hfm1	74	79.828	ENSORLG00000026844	hfm1	100	79.828	Oryzias_latipes
ENSPLAG00000000571	hfm1	85	69.444	ENSORLG00020002951	hfm1	76	68.158	Oryzias_latipes_hni
ENSPLAG00000000571	hfm1	92	71.107	ENSOMEG00000016474	hfm1	74	71.001	Oryzias_melastigma
ENSPLAG00000000571	hfm1	85	66.915	ENSOGAG00000032369	HFM1	76	66.915	Otolemur_garnettii
ENSPLAG00000000571	hfm1	92	64.098	ENSOARG00000015812	HFM1	71	64.098	Ovis_aries
ENSPLAG00000000571	hfm1	92	64.849	ENSPPAG00000024582	HFM1	77	64.849	Pan_paniscus
ENSPLAG00000000571	hfm1	92	63.549	ENSPPRG00000003270	HFM1	71	63.549	Panthera_pardus
ENSPLAG00000000571	hfm1	92	63.549	ENSPTIG00000018881	HFM1	71	63.549	Panthera_tigris_altaica
ENSPLAG00000000571	hfm1	92	64.202	ENSPTRG00000000948	HFM1	71	64.202	Pan_troglodytes
ENSPLAG00000000571	hfm1	92	63.743	ENSPANG00000009838	HFM1	71	63.743	Papio_anubis
ENSPLAG00000000571	hfm1	95	63.424	ENSPKIG00000003810	hfm1	94	72.167	Paramormyrops_kingsleyae
ENSPLAG00000000571	hfm1	75	76.364	ENSPMGG00000011059	hfm1	99	76.364	Periophthalmus_magnuspinnatus
ENSPLAG00000000571	hfm1	92	61.344	ENSPEMG00000022852	Hfm1	71	61.344	Peromyscus_maniculatus_bairdii
ENSPLAG00000000571	hfm1	92	60.220	ENSPCIG00000014233	HFM1	72	60.500	Phascolarctos_cinereus
ENSPLAG00000000571	hfm1	92	92.557	ENSPFOG00000017194	hfm1	100	92.653	Poecilia_formosa
ENSPLAG00000000571	hfm1	98	98.799	ENSPMEG00000019475	hfm1	99	98.799	Poecilia_mexicana
ENSPLAG00000000571	hfm1	98	96.179	ENSPREG00000007803	hfm1	100	96.179	Poecilia_reticulata
ENSPLAG00000000571	hfm1	92	64.098	ENSPPYG00000001163	HFM1	71	64.098	Pongo_abelii
ENSPLAG00000000571	hfm1	85	60.768	ENSPVAG00000009713	HFM1	66	60.768	Pteropus_vampyrus
ENSPLAG00000000571	hfm1	94	73.454	ENSPNYG00000001795	hfm1	96	79.444	Pundamilia_nyererei
ENSPLAG00000000571	hfm1	76	73.168	ENSPNAG00000010865	hfm1	84	73.168	Pygocentrus_nattereri
ENSPLAG00000000571	hfm1	92	61.209	ENSRNOG00000023299	Hfm1	71	61.209	Rattus_norvegicus
ENSPLAG00000000571	hfm1	92	63.415	ENSRROG00000045569	HFM1	71	63.415	Rhinopithecus_roxellana
ENSPLAG00000000571	hfm1	85	66.560	ENSSBOG00000027456	HFM1	66	66.560	Saimiri_boliviensis_boliviensis
ENSPLAG00000000571	hfm1	54	71.791	ENSSHAG00000014616	-	67	71.791	Sarcophilus_harrisii
ENSPLAG00000000571	hfm1	85	71.757	ENSSFOG00015020129	hfm1	64	71.757	Scleropages_formosus
ENSPLAG00000000571	hfm1	81	80.313	ENSSMAG00000006907	hfm1	87	80.313	Scophthalmus_maximus
ENSPLAG00000000571	hfm1	76	81.699	ENSSDUG00000011424	hfm1	93	82.303	Seriola_dumerili
ENSPLAG00000000571	hfm1	75	82.289	ENSSLDG00000016386	hfm1	92	82.289	Seriola_lalandi_dorsalis
ENSPLAG00000000571	hfm1	92	73.576	ENSSPAG00000001023	hfm1	93	82.809	Stegastes_partitus
ENSPLAG00000000571	hfm1	92	61.402	ENSSSCG00000006912	HFM1	78	61.402	Sus_scrofa
ENSPLAG00000000571	hfm1	85	64.196	ENSTGUG00000006172	HFM1	99	64.196	Taeniopygia_guttata
ENSPLAG00000000571	hfm1	92	62.512	ENSTTRG00000013933	HFM1	72	62.512	Tursiops_truncatus
ENSPLAG00000000571	hfm1	92	61.688	ENSVPAG00000011331	HFM1	71	61.688	Vicugna_pacos
ENSPLAG00000000571	hfm1	90	61.089	ENSVVUG00000020760	HFM1	99	61.089	Vulpes_vulpes
ENSPLAG00000000571	hfm1	74	94.096	ENSXMAG00000004178	hfm1	90	94.096	Xiphophorus_maculatus