EuRBPDB

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  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • PPI
  • Paralogs
  • Orthologs
Description
Ensembl ID
ENSPLAG00000000882 (Gene tree)
Gene ID
106958487
Gene Symbol
cpsf3
Alias
-
Full Name
cleavage and polyadenylation specific factor 3
Gene Type
protein_coding
Species
Poecilia_latipinna
Status
putative
Strand
Minus strand
Length
7017 bases
Position
chrKQ546304.1:295173-302189
Accession
106958487
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSPLAP00000019066CPSF73-100_CPF11718.86.4e-5311
ENSPLAP00000019068CPSF73-100_CPF11718.82.7e-5011
ENSPLAP00000019066Beta-CaspPF10996.81.5e-3311
ENSPLAP00000019068Beta-CaspPF10996.81.5e-3311
ENSPLAP00000019066Lactamase_BPF00753.271.6e-1811
ENSPLAP00000019068Lactamase_BPF00753.271.9e-1811
ENSPLAP00000019066RMMBLPF07521.121.7e-2111
ENSPLAP00000019068RMMBLPF07521.121.7e-2111
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSPLAT00000016962-2073-ENSPLAP00000019068690 (aa)--
ENSPLAT00000016960-2547XM_015050401ENSPLAP00000019066685 (aa)XP_014905887UPI000443C261
Gene Model
Click here to download ENSPLAG00000000882's gene model file
Protein-Protein Interaction (PPI)

Clik here to download ENSPLAG00000000882's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSPLAG00000000882cpsf36539.648ENSPLAG00000019195ints117439.648
ENSPLAG00000000882cpsf35879.506ENSPLAG00000021300-10079.506
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSPLAG00000000882cpsf39984.751ENSG00000119203CPSF310098.529Homo_sapiens
ENSPLAG00000000882cpsf310093.732ENSAPOG00000022087cpsf310093.732Acanthochromis_polyacanthus
ENSPLAG00000000882cpsf37594.747ENSAPOG00000012241CPSF39294.747Acanthochromis_polyacanthus
ENSPLAG00000000882cpsf39984.897ENSAMEG00000008493CPSF39984.897Ailuropoda_melanoleuca
ENSPLAG00000000882cpsf39188.480ENSACIG00000009846cpsf310082.070Amphilophus_citrinellus
ENSPLAG00000000882cpsf39184.152ENSACIG00000023663CPSF310078.292Amphilophus_citrinellus
ENSPLAG00000000882cpsf310093.732ENSAOCG00000022056cpsf310093.732Amphiprion_ocellaris
ENSPLAG00000000882cpsf310086.667ENSAOCG00000010077CPSF310086.667Amphiprion_ocellaris
ENSPLAG00000000882cpsf310093.732ENSAPEG00000019526cpsf310093.732Amphiprion_percula
ENSPLAG00000000882cpsf310086.667ENSAPEG00000021167CPSF310086.667Amphiprion_percula
ENSPLAG00000000882cpsf39982.994ENSATEG00000014525CPSF39982.994Anabas_testudineus
ENSPLAG00000000882cpsf39992.836ENSATEG00000003959cpsf39992.836Anabas_testudineus
ENSPLAG00000000882cpsf39784.054ENSAPLG00000006941CPSF39884.054Anas_platyrhynchos
ENSPLAG00000000882cpsf39282.205ENSACAG00000001759CPSF39982.205Anolis_carolinensis
ENSPLAG00000000882cpsf39979.912ENSANAG00000031254CPSF39980.510Aotus_nancymaae
ENSPLAG00000000882cpsf39184.469ENSACLG00000018846CPSF39984.469Astatotilapia_calliptera
ENSPLAG00000000882cpsf310090.028ENSACLG00000014484cpsf39993.353Astatotilapia_calliptera
ENSPLAG00000000882cpsf39986.647ENSAMXG00000004786cpsf39986.647Astyanax_mexicanus
ENSPLAG00000000882cpsf39984.897ENSBTAG00000019735CPSF39984.897Bos_taurus
ENSPLAG00000000882cpsf39257.298WBGene00013460cpsf-39157.298Caenorhabditis_elegans
ENSPLAG00000000882cpsf39984.604ENSCJAG00000006276CPSF39984.604Callithrix_jacchus
ENSPLAG00000000882cpsf39984.897ENSCAFG00000003375CPSF39584.897Canis_familiaris
ENSPLAG00000000882cpsf39087.379ENSCAFG00020026799CPSF39987.379Canis_lupus_dingo
ENSPLAG00000000882cpsf39984.897ENSCHIG00000013973CPSF39984.897Capra_hircus
ENSPLAG00000000882cpsf39984.751ENSTSYG00000002967CPSF39984.751Carlito_syrichta
ENSPLAG00000000882cpsf39684.685ENSCAPG00000013851CPSF39984.685Cavia_aperea
ENSPLAG00000000882cpsf39984.604ENSCPOG00000011299CPSF39984.604Cavia_porcellus
ENSPLAG00000000882cpsf39984.604ENSCCAG00000036730CPSF39984.708Cebus_capucinus
ENSPLAG00000000882cpsf39983.260ENSCATG00000014770CPSF39990.328Cercocebus_atys
ENSPLAG00000000882cpsf39984.457ENSCLAG00000002727CPSF39984.457Chinchilla_lanigera
ENSPLAG00000000882cpsf39976.979ENSCSAG00000007125CPSF39976.979Chlorocebus_sabaeus
ENSPLAG00000000882cpsf385100.000ENSCHOG00000000180CPSF38560.457Choloepus_hoffmanni
ENSPLAG00000000882cpsf39984.783ENSCPBG00000014074CPSF39984.783Chrysemys_picta_bellii
ENSPLAG00000000882cpsf39867.695ENSCING00000007214-9867.695Ciona_intestinalis
ENSPLAG00000000882cpsf39975.328ENSCANG00000034435CPSF39975.328Colobus_angolensis_palliatus
ENSPLAG00000000882cpsf39984.457ENSCGRG00001013134Cpsf39984.457Cricetulus_griseus_chok1gshd
ENSPLAG00000000882cpsf39984.457ENSCGRG00000018319Cpsf39984.457Cricetulus_griseus_crigri
ENSPLAG00000000882cpsf310085.384ENSCSEG00000002021CPSF310085.471Cynoglossus_semilaevis
ENSPLAG00000000882cpsf310086.377ENSCVAG00000015067CPSF310086.377Cyprinodon_variegatus
ENSPLAG00000000882cpsf310086.812ENSDARG00000027649cpsf310086.812Danio_rerio
ENSPLAG00000000882cpsf39983.748ENSDNOG00000008940CPSF39583.748Dasypus_novemcinctus
ENSPLAG00000000882cpsf39586.000ENSDORG00000014263Cpsf39986.000Dipodomys_ordii
ENSPLAG00000000882cpsf39966.272FBgn0261065Cpsf739966.272Drosophila_melanogaster
ENSPLAG00000000882cpsf39574.000ENSETEG00000003893CPSF39974.000Echinops_telfairi
ENSPLAG00000000882cpsf39974.330ENSEBUG00000009018cpsf39974.330Eptatretus_burgeri
ENSPLAG00000000882cpsf39984.897ENSEASG00005003970CPSF39984.897Equus_asinus_asinus
ENSPLAG00000000882cpsf39984.897ENSECAG00000019911CPSF39690.169Equus_caballus
ENSPLAG00000000882cpsf39970.235ENSEEUG00000015422CPSF39970.235Erinaceus_europaeus
ENSPLAG00000000882cpsf39988.953ENSELUG00000013775cpsf39988.953Esox_lucius
ENSPLAG00000000882cpsf39984.897ENSFCAG00000007852CPSF39984.897Felis_catus
ENSPLAG00000000882cpsf39484.080ENSFALG00000006572CPSF310084.080Ficedula_albicollis
ENSPLAG00000000882cpsf39984.288ENSFDAG00000006317CPSF39984.288Fukomys_damarensis
ENSPLAG00000000882cpsf310096.793ENSFHEG00000014774cpsf310096.793Fundulus_heteroclitus
ENSPLAG00000000882cpsf35865.610ENSFHEG00000012186CPSF310065.610Fundulus_heteroclitus
ENSPLAG00000000882cpsf310089.260ENSGMOG00000003157cpsf310089.260Gadus_morhua
ENSPLAG00000000882cpsf39984.470ENSGALG00000016424CPSF39984.470Gallus_gallus
ENSPLAG00000000882cpsf310087.246ENSGAFG00000008016CPSF310087.246Gambusia_affinis
ENSPLAG00000000882cpsf39796.314ENSGAFG00000019449cpsf310089.781Gambusia_affinis
ENSPLAG00000000882cpsf36779.443ENSGAGG00000025583CPSF39379.443Gopherus_agassizii
ENSPLAG00000000882cpsf39982.640ENSGGOG00000001757CPSF39196.146Gorilla_gorilla
ENSPLAG00000000882cpsf310093.440ENSHBUG00000001188cpsf310093.440Haplochromis_burtoni
ENSPLAG00000000882cpsf35878.025ENSHBUG00000014332CPSF310078.025Haplochromis_burtoni
ENSPLAG00000000882cpsf39984.288ENSHGLG00000000666CPSF39984.288Heterocephalus_glaber_female
ENSPLAG00000000882cpsf39984.288ENSHGLG00100007765CPSF39984.288Heterocephalus_glaber_male
ENSPLAG00000000882cpsf39991.387ENSHCOG00000007251cpsf39991.387Hippocampus_comes
ENSPLAG00000000882cpsf39985.486ENSHCOG00000015957CPSF39985.486Hippocampus_comes
ENSPLAG00000000882cpsf310087.101ENSIPUG00000023488cpsf310087.101Ictalurus_punctatus
ENSPLAG00000000882cpsf39984.457ENSSTOG00000004476CPSF39984.457Ictidomys_tridecemlineatus
ENSPLAG00000000882cpsf39984.187ENSJJAG00000023415Cpsf39984.187Jaculus_jaculus
ENSPLAG00000000882cpsf310094.461ENSKMAG00000002806cpsf310094.461Kryptolebias_marmoratus
ENSPLAG00000000882cpsf310085.942ENSKMAG00000007317CPSF310085.942Kryptolebias_marmoratus
ENSPLAG00000000882cpsf39687.823ENSLBEG00000013492CPSF39987.823Labrus_bergylta
ENSPLAG00000000882cpsf35586.364ENSLBEG00000015018-9986.364Labrus_bergylta
ENSPLAG00000000882cpsf39983.895ENSLBEG00000020569cpsf39683.895Labrus_bergylta
ENSPLAG00000000882cpsf39978.665ENSLACG00000008308CPSF39978.665Latimeria_chalumnae
ENSPLAG00000000882cpsf310086.724ENSLOCG00000016823cpsf310086.724Lepisosteus_oculatus
ENSPLAG00000000882cpsf39883.947ENSLAFG00000009467CPSF39983.947Loxodonta_africana
ENSPLAG00000000882cpsf39984.604ENSMFAG00000001339CPSF39593.154Macaca_fascicularis
ENSPLAG00000000882cpsf39384.211ENSMMUG00000018038CPSF39293.154Macaca_mulatta
ENSPLAG00000000882cpsf39096.032ENSMNEG00000039447CPSF39996.032Macaca_nemestrina
ENSPLAG00000000882cpsf39984.751ENSMLEG00000026825CPSF39296.137Mandrillus_leucophaeus
ENSPLAG00000000882cpsf39183.994ENSMAMG00000008835CPSF310078.003Mastacembelus_armatus
ENSPLAG00000000882cpsf310091.691ENSMAMG00000003076cpsf310091.691Mastacembelus_armatus
ENSPLAG00000000882cpsf310093.440ENSMZEG00005014358cpsf310093.440Maylandia_zebra
ENSPLAG00000000882cpsf310086.522ENSMZEG00005006258CPSF310086.522Maylandia_zebra
ENSPLAG00000000882cpsf39684.408ENSMGAG00000013995CPSF310084.408Meleagris_gallopavo
ENSPLAG00000000882cpsf35474.667ENSMAUG00000000166Cpsf39974.667Mesocricetus_auratus
ENSPLAG00000000882cpsf39979.825ENSMICG00000002363CPSF39979.825Microcebus_murinus
ENSPLAG00000000882cpsf39982.006ENSMOCG00000020067Cpsf39982.006Microtus_ochrogaster
ENSPLAG00000000882cpsf39386.385ENSMMOG00000018212CPSF39886.385Mola_mola
ENSPLAG00000000882cpsf38070.238ENSMMOG00000011923CPSF38576.786Mola_mola
ENSPLAG00000000882cpsf39983.309ENSMODG00000014703CPSF39983.309Monodelphis_domestica
ENSPLAG00000000882cpsf310092.857ENSMALG00000016416cpsf310092.857Monopterus_albus
ENSPLAG00000000882cpsf39282.547ENSMALG00000011474CPSF39982.547Monopterus_albus
ENSPLAG00000000882cpsf39985.044MGP_CAROLIEiJ_G0017640Cpsf39985.044Mus_caroli
ENSPLAG00000000882cpsf39985.044ENSMUSG00000054309Cpsf39697.034Mus_musculus
ENSPLAG00000000882cpsf39984.897MGP_PahariEiJ_G0029397Cpsf39984.897Mus_pahari
ENSPLAG00000000882cpsf39985.044MGP_SPRETEiJ_G0018481Cpsf39985.044Mus_spretus
ENSPLAG00000000882cpsf39984.875ENSMPUG00000013213CPSF39984.875Mustela_putorius_furo
ENSPLAG00000000882cpsf39984.773ENSMLUG00000010636CPSF39984.773Myotis_lucifugus
ENSPLAG00000000882cpsf39984.751ENSNGAG00000019836Cpsf39984.751Nannospalax_galili
ENSPLAG00000000882cpsf39184.469ENSNBRG00000010525CPSF39984.469Neolamprologus_brichardi
ENSPLAG00000000882cpsf310093.440ENSNBRG00000004770cpsf310093.440Neolamprologus_brichardi
ENSPLAG00000000882cpsf39984.604ENSNLEG00000013359CPSF39196.146Nomascus_leucogenys
ENSPLAG00000000882cpsf39954.692ENSMEUG00000013117-9954.692Notamacropus_eugenii
ENSPLAG00000000882cpsf39976.358ENSOPRG00000008902CPSF39976.358Ochotona_princeps
ENSPLAG00000000882cpsf39984.604ENSODEG00000003129CPSF39984.604Octodon_degus
ENSPLAG00000000882cpsf310092.857ENSONIG00000018812cpsf310092.857Oreochromis_niloticus
ENSPLAG00000000882cpsf38181.883ENSOANG00000008577CPSF39981.883Ornithorhynchus_anatinus
ENSPLAG00000000882cpsf39984.897ENSOCUG00000003728CPSF39984.897Oryctolagus_cuniculus
ENSPLAG00000000882cpsf310092.711ENSORLG00000018854cpsf310092.711Oryzias_latipes
ENSPLAG00000000882cpsf310092.566ENSORLG00020013331cpsf310092.566Oryzias_latipes_hni
ENSPLAG00000000882cpsf310092.711ENSORLG00015011017cpsf310092.711Oryzias_latipes_hsok
ENSPLAG00000000882cpsf310092.420ENSOMEG00000010647cpsf39692.420Oryzias_melastigma
ENSPLAG00000000882cpsf39974.780ENSOGAG00000001680CPSF39974.780Otolemur_garnettii
ENSPLAG00000000882cpsf39984.897ENSOARG00000015073CPSF39984.897Ovis_aries
ENSPLAG00000000882cpsf39984.751ENSPPAG00000042457CPSF39196.146Pan_paniscus
ENSPLAG00000000882cpsf39984.751ENSPPRG00000016790CPSF39984.897Panthera_pardus
ENSPLAG00000000882cpsf39885.125ENSPTIG00000003920CPSF39985.272Panthera_tigris_altaica
ENSPLAG00000000882cpsf39984.751ENSPTRG00000011638CPSF39196.146Pan_troglodytes
ENSPLAG00000000882cpsf39984.751ENSPANG00000016798CPSF39593.154Papio_anubis
ENSPLAG00000000882cpsf310087.101ENSPKIG00000023646cpsf310087.101Paramormyrops_kingsleyae
ENSPLAG00000000882cpsf39983.871ENSPSIG00000016144CPSF39983.871Pelodiscus_sinensis
ENSPLAG00000000882cpsf35878.465ENSPMGG00000015311CPSF310078.465Periophthalmus_magnuspinnatus
ENSPLAG00000000882cpsf38290.106ENSPMGG00000006141-9485.691Periophthalmus_magnuspinnatus
ENSPLAG00000000882cpsf39984.457ENSPEMG00000017668Cpsf39984.604Peromyscus_maniculatus_bairdii
ENSPLAG00000000882cpsf37988.950ENSPMAG00000004841cpsf39988.950Petromyzon_marinus
ENSPLAG00000000882cpsf39684.384ENSPCIG00000009823CPSF39884.663Phascolarctos_cinereus
ENSPLAG00000000882cpsf310086.957ENSPFOG00000010418-10086.957Poecilia_formosa
ENSPLAG00000000882cpsf3100100.000ENSPFOG00000015922cpsf3100100.000Poecilia_formosa
ENSPLAG00000000882cpsf310099.854ENSPMEG00000018309cpsf310099.854Poecilia_mexicana
ENSPLAG00000000882cpsf39797.276ENSPREG00000014875cpsf310090.657Poecilia_reticulata
ENSPLAG00000000882cpsf310081.713ENSPREG00000004482CPSF310081.713Poecilia_reticulata
ENSPLAG00000000882cpsf39980.499ENSPPYG00000012666CPSF39980.499Pongo_abelii
ENSPLAG00000000882cpsf38564.286ENSPCAG00000015042CPSF38964.286Procavia_capensis
ENSPLAG00000000882cpsf38788.256ENSPCOG00000023016CPSF39788.256Propithecus_coquereli
ENSPLAG00000000882cpsf39985.022ENSPVAG00000005324CPSF39985.022Pteropus_vampyrus
ENSPLAG00000000882cpsf310093.440ENSPNYG00000004405cpsf310093.440Pundamilia_nyererei
ENSPLAG00000000882cpsf37990.406ENSPNYG00000021047CPSF39685.615Pundamilia_nyererei
ENSPLAG00000000882cpsf310086.812ENSPNAG00000023060cpsf310086.812Pygocentrus_nattereri
ENSPLAG00000000882cpsf39985.022ENSRNOG00000052418Cpsf39985.022Rattus_norvegicus
ENSPLAG00000000882cpsf39979.619ENSRBIG00000041615CPSF39980.650Rhinopithecus_bieti
ENSPLAG00000000882cpsf39984.751ENSRROG00000033792CPSF39984.751Rhinopithecus_roxellana
ENSPLAG00000000882cpsf39738.961YLR277CYSH19838.961Saccharomyces_cerevisiae
ENSPLAG00000000882cpsf39681.231ENSSBOG00000027263CPSF39781.231Saimiri_boliviensis_boliviensis
ENSPLAG00000000882cpsf39984.604ENSSHAG00000007024CPSF39984.604Sarcophilus_harrisii
ENSPLAG00000000882cpsf310086.957ENSSFOG00015002108cpsf310086.957Scleropages_formosus
ENSPLAG00000000882cpsf39687.500ENSSMAG00000020534CPSF39787.500Scophthalmus_maximus
ENSPLAG00000000882cpsf310092.274ENSSDUG00000002828cpsf39792.274Seriola_dumerili
ENSPLAG00000000882cpsf310086.377ENSSDUG00000018498CPSF310086.377Seriola_dumerili
ENSPLAG00000000882cpsf310086.377ENSSLDG00000005234CPSF310086.377Seriola_lalandi_dorsalis
ENSPLAG00000000882cpsf310091.983ENSSLDG00000008469cpsf39791.983Seriola_lalandi_dorsalis
ENSPLAG00000000882cpsf38982.331ENSSARG00000005186CPSF39082.331Sorex_araneus
ENSPLAG00000000882cpsf39683.284ENSSPUG00000015525CPSF39783.284Sphenodon_punctatus
ENSPLAG00000000882cpsf310093.003ENSSPAG00000018579cpsf310093.003Stegastes_partitus
ENSPLAG00000000882cpsf310086.377ENSSPAG00000002906CPSF310086.377Stegastes_partitus
ENSPLAG00000000882cpsf39984.897ENSSSCG00000020799CPSF39984.897Sus_scrofa
ENSPLAG00000000882cpsf39984.357ENSTGUG00000013016CPSF310084.357Taeniopygia_guttata
ENSPLAG00000000882cpsf35871.712ENSTRUG00000013905CPSF39971.712Takifugu_rubripes
ENSPLAG00000000882cpsf39989.912ENSTRUG00000007030cpsf39889.912Takifugu_rubripes
ENSPLAG00000000882cpsf38489.835ENSTBEG00000002707CPSF38489.835Tupaia_belangeri
ENSPLAG00000000882cpsf38773.123ENSTTRG00000000861CPSF38773.123Tursiops_truncatus
ENSPLAG00000000882cpsf39585.933ENSUAMG00000007535CPSF39485.933Ursus_americanus
ENSPLAG00000000882cpsf39384.520ENSUMAG00000003676CPSF39489.606Ursus_maritimus
ENSPLAG00000000882cpsf39285.174ENSVPAG00000008041CPSF310085.174Vicugna_pacos
ENSPLAG00000000882cpsf39984.897ENSVVUG00000002194CPSF39984.897Vulpes_vulpes
ENSPLAG00000000882cpsf39982.874ENSXETG00000008263cpsf39982.874Xenopus_tropicalis
ENSPLAG00000000882cpsf310098.102ENSXCOG00000019695cpsf310098.102Xiphophorus_couchianus
ENSPLAG00000000882cpsf35478.226ENSXCOG00000000957-8778.226Xiphophorus_couchianus
ENSPLAG00000000882cpsf310087.391ENSXMAG00000027291CPSF310087.391Xiphophorus_maculatus
ENSPLAG00000000882cpsf310098.688ENSXMAG00000009784cpsf310098.688Xiphophorus_maculatus

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