EuRBPDB

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  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • PPI
  • Paralogs
  • Orthologs
Description
Ensembl ID
ENSPLAG00000001388 (Gene tree)
Gene ID
106961328
Gene Symbol
pabpc1b
Alias
-
Full Name
polyadenylate-binding protein 1
Gene Type
protein_coding
Species
Poecilia_latipinna
Status
putative
Strand
Minus strand
Length
8339 bases
Position
chrKQ546604.1:86717-95055
Accession
106961328
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSPLAP00000000554PABPPF00658.184.9e-3211
ENSPLAP00000000554RRM_5PF13893.69.2e-0912
ENSPLAP00000000554RRM_5PF13893.69.2e-0922
ENSPLAP00000000554RRM_1PF00076.221.5e-8914
ENSPLAP00000000554RRM_1PF00076.221.5e-8924
ENSPLAP00000000554RRM_1PF00076.221.5e-8934
ENSPLAP00000000554RRM_1PF00076.221.5e-8944
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSPLAT00000016244-2943XM_015054981ENSPLAP00000000554634 (aa)XP_014910467UPI0004A30D0E
Gene Model
Click here to download ENSPLAG00000001388's gene model file
Protein-Protein Interaction (PPI)

Clik here to download ENSPLAG00000001388's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSPLAG00000001388pabpc1b5738.251ENSPLAG00000001401sf3b45038.251
ENSPLAG00000001388pabpc1b5936.145ENSPLAG00000008085elavl48736.145
ENSPLAG00000001388pabpc1b5930.035ENSPLAG00000007718tial18530.159
ENSPLAG00000001388pabpc1b6188.462ENSPLAG00000023686-9288.462
ENSPLAG00000001388pabpc1b5336.047ENSPLAG00000021601-5836.047
ENSPLAG00000001388pabpc1b9870.295ENSPLAG00000017490-9970.266
ENSPLAG00000001388pabpc1b5937.349ENSPLAG00000005203ELAVL29236.145
ENSPLAG00000001388pabpc1b5038.158ENSPLAG00000000481rbfox3b5238.158
ENSPLAG00000001388pabpc1b9976.471ENSPLAG00000010112pabpc49876.153
ENSPLAG00000001388pabpc1b5637.333ENSPLAG00000000059rbm195937.333
ENSPLAG00000001388pabpc1b5638.889ENSPLAG00000013925-7638.889
ENSPLAG00000001388pabpc1b5930.208ENSPLAG00000013231-7930.208
ENSPLAG00000001388pabpc1b10090.282ENSPLAG00000004114pabpc1a10089.185
ENSPLAG00000001388pabpc1b5930.065ENSPLAG00000001547elavl39030.065
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSPLAG00000001388pabpc1b5879.592ENSG00000184388PABPC1L2B9879.592Homo_sapiens
ENSPLAG00000001388pabpc1b5879.592ENSG00000186288PABPC1L2A9879.592Homo_sapiens
ENSPLAG00000001388pabpc1b10090.439ENSAPOG00000015105pabpc1a10090.125Acanthochromis_polyacanthus
ENSPLAG00000001388pabpc1b10095.741ENSAPOG00000017776pabpc1b10095.741Acanthochromis_polyacanthus
ENSPLAG00000001388pabpc1b5879.592ENSAMEG00000019441-9879.592Ailuropoda_melanoleuca
ENSPLAG00000001388pabpc1b10090.125ENSACIG00000004685pabpc1a10089.969Amphilophus_citrinellus
ENSPLAG00000001388pabpc1b10089.905ENSACIG00000018366pabpc1b10087.346Amphilophus_citrinellus
ENSPLAG00000001388pabpc1b10090.125ENSAOCG00000011656pabpc1a10089.028Amphiprion_ocellaris
ENSPLAG00000001388pabpc1b10095.584ENSAOCG00000019839pabpc1b10095.584Amphiprion_ocellaris
ENSPLAG00000001388pabpc1b10095.584ENSAPEG00000010435pabpc1b10095.584Amphiprion_percula
ENSPLAG00000001388pabpc1b10090.125ENSAPEG00000006963pabpc1a10089.028Amphiprion_percula
ENSPLAG00000001388pabpc1b10090.125ENSATEG00000024852pabpc1a10089.969Anabas_testudineus
ENSPLAG00000001388pabpc1b10094.654ENSATEG00000012917pabpc1b10094.654Anabas_testudineus
ENSPLAG00000001388pabpc1b5879.592ENSANAG00000019431-9879.592Aotus_nancymaae
ENSPLAG00000001388pabpc1b5879.592ENSANAG00000019429-9879.592Aotus_nancymaae
ENSPLAG00000001388pabpc1b9991.533ENSACLG00000009399pabpc1a10091.364Astatotilapia_calliptera
ENSPLAG00000001388pabpc1b10094.006ENSACLG00000014335pabpc1b10094.006Astatotilapia_calliptera
ENSPLAG00000001388pabpc1b10093.543ENSAMXG00000008599pabpc1b10093.071Astyanax_mexicanus
ENSPLAG00000001388pabpc1b5976.555ENSBTAG00000052491-9876.555Bos_taurus
ENSPLAG00000001388pabpc1b5978.537ENSBTAG00000050902-9878.537Bos_taurus
ENSPLAG00000001388pabpc1b5879.592ENSCJAG00000041326-9879.592Callithrix_jacchus
ENSPLAG00000001388pabpc1b5978.537ENSCAFG00020002052-9878.537Canis_lupus_dingo
ENSPLAG00000001388pabpc1b5879.592ENSCHIG00000006283-9879.592Capra_hircus
ENSPLAG00000001388pabpc1b5879.592ENSCHIG00000011138-9879.592Capra_hircus
ENSPLAG00000001388pabpc1b5879.592ENSTSYG00000001775-9879.592Carlito_syrichta
ENSPLAG00000001388pabpc1b5879.592ENSCPOG00000009525-9879.592Cavia_porcellus
ENSPLAG00000001388pabpc1b5879.592ENSCCAG00000031524-9879.592Cebus_capucinus
ENSPLAG00000001388pabpc1b5879.592ENSCATG00000042826-9879.592Cercocebus_atys
ENSPLAG00000001388pabpc1b5879.592ENSCATG00000043125-9879.592Cercocebus_atys
ENSPLAG00000001388pabpc1b5878.571ENSCLAG00000017409-9878.571Chinchilla_lanigera
ENSPLAG00000001388pabpc1b5878.571ENSCLAG00000017412-9878.571Chinchilla_lanigera
ENSPLAG00000001388pabpc1b5879.592ENSCSAG00000000102-9879.592Chlorocebus_sabaeus
ENSPLAG00000001388pabpc1b5880.110ENSCGRG00001023387-9677.949Cricetulus_griseus_chok1gshd
ENSPLAG00000001388pabpc1b9989.905ENSCSEG00000013324pabpc1a10089.748Cynoglossus_semilaevis
ENSPLAG00000001388pabpc1b10091.009ENSCSEG00000015241-10091.009Cynoglossus_semilaevis
ENSPLAG00000001388pabpc1b10096.220ENSCVAG00000005489pabpc1b10096.220Cyprinodon_variegatus
ENSPLAG00000001388pabpc1b10090.125ENSCVAG00000021872pabpc1a10089.028Cyprinodon_variegatus
ENSPLAG00000001388pabpc1b10092.913ENSDARG00000021140pabpc1b10092.913Danio_rerio
ENSPLAG00000001388pabpc1b10090.409ENSDARG00000017219pabpc1a10089.780Danio_rerio
ENSPLAG00000001388pabpc1b5880.423ENSDNOG00000030926-9878.061Dasypus_novemcinctus
ENSPLAG00000001388pabpc1b5878.061ENSDORG00000011362-9878.061Dipodomys_ordii
ENSPLAG00000001388pabpc1b5978.155ENSEASG00005010399-9878.155Equus_asinus_asinus
ENSPLAG00000001388pabpc1b5978.155ENSECAG00000002620-9878.155Equus_caballus
ENSPLAG00000001388pabpc1b5975.000ENSEEUG00000008203-9875.000Erinaceus_europaeus
ENSPLAG00000001388pabpc1b5959.052ENSELUG00000005389-9759.052Esox_lucius
ENSPLAG00000001388pabpc1b10091.680ENSELUG00000015062-10091.680Esox_lucius
ENSPLAG00000001388pabpc1b9990.881ENSELUG00000003614pabpc1a10090.094Esox_lucius
ENSPLAG00000001388pabpc1b5879.592ENSFCAG00000039701-9879.592Felis_catus
ENSPLAG00000001388pabpc1b5879.592ENSFDAG00000005484-9879.592Fukomys_damarensis
ENSPLAG00000001388pabpc1b10089.969ENSFHEG00000018979pabpc1a10089.812Fundulus_heteroclitus
ENSPLAG00000001388pabpc1b10097.319ENSFHEG00000008186pabpc1b10097.319Fundulus_heteroclitus
ENSPLAG00000001388pabpc1b10083.333ENSGMOG00000002448-10082.710Gadus_morhua
ENSPLAG00000001388pabpc1b9988.180ENSGMOG00000013448pabpc1a9988.180Gadus_morhua
ENSPLAG00000001388pabpc1b10099.369ENSGAFG00000010193pabpc1b10099.369Gambusia_affinis
ENSPLAG00000001388pabpc1b10089.655ENSGAFG00000019750pabpc1a10088.715Gambusia_affinis
ENSPLAG00000001388pabpc1b10092.031ENSGACG00000003771pabpc1b10092.031Gasterosteus_aculeatus
ENSPLAG00000001388pabpc1b10090.282ENSGACG00000003572pabpc1a10090.125Gasterosteus_aculeatus
ENSPLAG00000001388pabpc1b5879.592ENSGGOG00000038606-9879.592Gorilla_gorilla
ENSPLAG00000001388pabpc1b5879.592ENSGGOG00000043933-9879.592Gorilla_gorilla
ENSPLAG00000001388pabpc1b9991.533ENSHBUG00000020487pabpc1a10091.364Haplochromis_burtoni
ENSPLAG00000001388pabpc1b10094.006ENSHBUG00000002075pabpc1b10094.006Haplochromis_burtoni
ENSPLAG00000001388pabpc1b5879.592ENSHGLG00000019668-9879.592Heterocephalus_glaber_female
ENSPLAG00000001388pabpc1b5879.592ENSHGLG00000019762-9879.592Heterocephalus_glaber_female
ENSPLAG00000001388pabpc1b5879.592ENSHGLG00100020854-9879.592Heterocephalus_glaber_male
ENSPLAG00000001388pabpc1b10089.969ENSHCOG00000013502pabpc1a10089.812Hippocampus_comes
ENSPLAG00000001388pabpc1b9876.586ENSHCOG00000003175pabpc1b9981.915Hippocampus_comes
ENSPLAG00000001388pabpc1b7455.532ENSIPUG00000021244-6555.532Ictalurus_punctatus
ENSPLAG00000001388pabpc1b10088.661ENSIPUG00000008848pabpc1a10088.504Ictalurus_punctatus
ENSPLAG00000001388pabpc1b7455.224ENSIPUG00000018724-7655.224Ictalurus_punctatus
ENSPLAG00000001388pabpc1b10086.772ENSIPUG00000010791-10086.614Ictalurus_punctatus
ENSPLAG00000001388pabpc1b5880.102ENSSTOG00000026028-9880.102Ictidomys_tridecemlineatus
ENSPLAG00000001388pabpc1b5880.102ENSSTOG00000022096-9880.102Ictidomys_tridecemlineatus
ENSPLAG00000001388pabpc1b5879.082ENSJJAG00000007037-9879.082Jaculus_jaculus
ENSPLAG00000001388pabpc1b10094.322ENSKMAG00000008049pabpc1b10093.849Kryptolebias_marmoratus
ENSPLAG00000001388pabpc1b10090.125ENSKMAG00000000605pabpc1a10089.969Kryptolebias_marmoratus
ENSPLAG00000001388pabpc1b10089.812ENSLBEG00000024002-10089.655Labrus_bergylta
ENSPLAG00000001388pabpc1b10094.164ENSLBEG00000026845pabpc1b10094.164Labrus_bergylta
ENSPLAG00000001388pabpc1b5878.974ENSLAFG00000023096-9878.974Loxodonta_africana
ENSPLAG00000001388pabpc1b5879.188ENSMFAG00000028878-9879.188Macaca_fascicularis
ENSPLAG00000001388pabpc1b5879.592ENSMMUG00000009740-9879.592Macaca_mulatta
ENSPLAG00000001388pabpc1b5879.592ENSMMUG00000037681-9879.592Macaca_mulatta
ENSPLAG00000001388pabpc1b5879.592ENSMMUG00000039929-9879.592Macaca_mulatta
ENSPLAG00000001388pabpc1b5879.592ENSMNEG00000037732-9879.592Macaca_nemestrina
ENSPLAG00000001388pabpc1b5879.592ENSMLEG00000027495-9879.592Mandrillus_leucophaeus
ENSPLAG00000001388pabpc1b10089.812ENSMAMG00000004502-10089.655Mastacembelus_armatus
ENSPLAG00000001388pabpc1b10095.584ENSMAMG00000014610pabpc1b10095.584Mastacembelus_armatus
ENSPLAG00000001388pabpc1b10094.006ENSMZEG00005026745pabpc1b10094.006Maylandia_zebra
ENSPLAG00000001388pabpc1b9991.533ENSMZEG00005025416pabpc1a10091.364Maylandia_zebra
ENSPLAG00000001388pabpc1b5879.592ENSMICG00000047642-9879.592Microcebus_murinus
ENSPLAG00000001388pabpc1b9990.160ENSMMOG00000018044pabpc1a10090.000Mola_mola
ENSPLAG00000001388pabpc1b10088.170ENSMMOG00000018009pabpc1b10088.013Mola_mola
ENSPLAG00000001388pabpc1b9873.248ENSMODG00000013156-9873.440Monodelphis_domestica
ENSPLAG00000001388pabpc1b9867.305ENSMODG00000015024-9966.455Monodelphis_domestica
ENSPLAG00000001388pabpc1b10089.274ENSMALG00000006066pabpc1b10089.432Monopterus_albus
ENSPLAG00000001388pabpc1b10089.185ENSMALG00000013020-10089.185Monopterus_albus
ENSPLAG00000001388pabpc1b5881.967ENSNGAG00000012688-9879.082Nannospalax_galili
ENSPLAG00000001388pabpc1b9991.533ENSNBRG00000003068-10091.364Neolamprologus_brichardi
ENSPLAG00000001388pabpc1b10094.006ENSNBRG00000013737pabpc1b10094.006Neolamprologus_brichardi
ENSPLAG00000001388pabpc1b5879.592ENSNLEG00000018128-9879.592Nomascus_leucogenys
ENSPLAG00000001388pabpc1b5879.082ENSODEG00000018540-9879.082Octodon_degus
ENSPLAG00000001388pabpc1b10093.691ENSONIG00000002717pabpc1b10093.691Oreochromis_niloticus
ENSPLAG00000001388pabpc1b10089.969ENSONIG00000006871-10089.655Oreochromis_niloticus
ENSPLAG00000001388pabpc1b5879.592ENSOCUG00000002565-9879.592Oryctolagus_cuniculus
ENSPLAG00000001388pabpc1b10086.751ENSORLG00000003008-10085.962Oryzias_latipes
ENSPLAG00000001388pabpc1b9993.587ENSORLG00000002691pabpc1a9693.587Oryzias_latipes
ENSPLAG00000001388pabpc1b10089.812ENSORLG00020022398pabpc1a10089.655Oryzias_latipes_hni
ENSPLAG00000001388pabpc1b10086.751ENSORLG00020022259-10085.962Oryzias_latipes_hni
ENSPLAG00000001388pabpc1b10087.066ENSORLG00015010932-10086.278Oryzias_latipes_hsok
ENSPLAG00000001388pabpc1b10089.655ENSORLG00015013633pabpc110089.498Oryzias_latipes_hsok
ENSPLAG00000001388pabpc1b9985.126ENSOMEG00000013627pabpc1b10085.126Oryzias_melastigma
ENSPLAG00000001388pabpc1b10090.125ENSOMEG00000020219pabpc1a10089.969Oryzias_melastigma
ENSPLAG00000001388pabpc1b5879.592ENSOGAG00000029513-9879.592Otolemur_garnettii
ENSPLAG00000001388pabpc1b5879.592ENSOGAG00000026047-9879.592Otolemur_garnettii
ENSPLAG00000001388pabpc1b5879.592ENSOARG00000005943-9879.592Ovis_aries
ENSPLAG00000001388pabpc1b5879.592ENSPPAG00000012920-9879.592Pan_paniscus
ENSPLAG00000001388pabpc1b5879.592ENSPPRG00000011804-9879.592Panthera_pardus
ENSPLAG00000001388pabpc1b5879.592ENSPPRG00000011809-9879.592Panthera_pardus
ENSPLAG00000001388pabpc1b5879.592ENSPTRG00000028252-9879.592Pan_troglodytes
ENSPLAG00000001388pabpc1b5879.592ENSPANG00000011549-9879.592Papio_anubis
ENSPLAG00000001388pabpc1b10093.858ENSPKIG00000005676pabpc1b10093.543Paramormyrops_kingsleyae
ENSPLAG00000001388pabpc1b7094.619ENSPMGG00000023134-9794.619Periophthalmus_magnuspinnatus
ENSPLAG00000001388pabpc1b7092.825ENSPMGG00000022487pabpc1a9292.825Periophthalmus_magnuspinnatus
ENSPLAG00000001388pabpc1b9971.542ENSPCIG00000016995-5471.040Phascolarctos_cinereus
ENSPLAG00000001388pabpc1b10088.769ENSPFOG00000010815pabpc1a10088.598Poecilia_formosa
ENSPLAG00000001388pabpc1b10099.685ENSPFOG00000005917pabpc1b10099.685Poecilia_formosa
ENSPLAG00000001388pabpc1b10099.685ENSPMEG00000014399pabpc1b10099.685Poecilia_mexicana
ENSPLAG00000001388pabpc1b10090.282ENSPMEG00000001334pabpc1a10089.185Poecilia_mexicana
ENSPLAG00000001388pabpc1b100100.000ENSPREG00000010911pabpc1b100100.000Poecilia_reticulata
ENSPLAG00000001388pabpc1b9991.076ENSPREG00000019595pabpc1a10090.909Poecilia_reticulata
ENSPLAG00000001388pabpc1b5879.592ENSPPYG00000020468-9879.592Pongo_abelii
ENSPLAG00000001388pabpc1b5979.592ENSPCAG00000005308-9879.592Procavia_capensis
ENSPLAG00000001388pabpc1b5880.102ENSPCOG00000026349-9880.102Propithecus_coquereli
ENSPLAG00000001388pabpc1b5980.000ENSPVAG00000016117-9880.000Pteropus_vampyrus
ENSPLAG00000001388pabpc1b10089.969ENSPNYG00000005192pabpc1a10089.812Pundamilia_nyererei
ENSPLAG00000001388pabpc1b10094.006ENSPNYG00000012578pabpc1b10094.006Pundamilia_nyererei
ENSPLAG00000001388pabpc1b10093.543ENSPNAG00000024626pabpc1b10093.071Pygocentrus_nattereri
ENSPLAG00000001388pabpc1b10089.937ENSPNAG00000028408pabpc1a10089.308Pygocentrus_nattereri
ENSPLAG00000001388pabpc1b9991.017ENSRBIG00000028738-9591.017Rhinopithecus_bieti
ENSPLAG00000001388pabpc1b5879.592ENSRBIG00000027173-9879.592Rhinopithecus_bieti
ENSPLAG00000001388pabpc1b5879.592ENSRROG00000017404-9879.592Rhinopithecus_roxellana
ENSPLAG00000001388pabpc1b9863.987ENSSHAG00000000511-10063.666Sarcophilus_harrisii
ENSPLAG00000001388pabpc1b10093.218ENSSFOG00015002752-10093.218Scleropages_formosus
ENSPLAG00000001388pabpc1b10091.024ENSSFOG00015006662pabpc1a10091.024Scleropages_formosus
ENSPLAG00000001388pabpc1b7079.769ENSSFOG00015019668-9179.769Scleropages_formosus
ENSPLAG00000001388pabpc1b10089.969ENSSMAG00000010803pabpc1a10089.812Scophthalmus_maximus
ENSPLAG00000001388pabpc1b10094.479ENSSMAG00000006869pabpc1b10094.479Scophthalmus_maximus
ENSPLAG00000001388pabpc1b10093.533ENSSDUG00000011965pabpc1b10093.533Seriola_dumerili
ENSPLAG00000001388pabpc1b10089.969ENSSDUG00000006675pabpc1a10089.812Seriola_dumerili
ENSPLAG00000001388pabpc1b10095.149ENSSLDG00000014156pabpc1b10095.149Seriola_lalandi_dorsalis
ENSPLAG00000001388pabpc1b10089.969ENSSLDG00000011661pabpc1a10089.812Seriola_lalandi_dorsalis
ENSPLAG00000001388pabpc1b10090.282ENSSPAG00000014453-10090.125Stegastes_partitus
ENSPLAG00000001388pabpc1b10096.057ENSSPAG00000019265pabpc1b10096.057Stegastes_partitus
ENSPLAG00000001388pabpc1b5879.592ENSSSCG00000032167-9879.592Sus_scrofa
ENSPLAG00000001388pabpc1b5879.592ENSSSCG00000036336-9879.592Sus_scrofa
ENSPLAG00000001388pabpc1b10091.181ENSTRUG00000003767-10090.551Takifugu_rubripes
ENSPLAG00000001388pabpc1b10089.342ENSTRUG00000011577-10089.342Takifugu_rubripes
ENSPLAG00000001388pabpc1b10091.223ENSTNIG00000009153pabpc1b10090.752Tetraodon_nigroviridis
ENSPLAG00000001388pabpc1b10086.399ENSTNIG00000013307pabpc1a10086.399Tetraodon_nigroviridis
ENSPLAG00000001388pabpc1b5879.592ENSTTRG00000013181-9879.592Tursiops_truncatus
ENSPLAG00000001388pabpc1b5879.592ENSUAMG00000008089-9879.592Ursus_americanus
ENSPLAG00000001388pabpc1b5879.592ENSUMAG00000003364-9879.592Ursus_maritimus
ENSPLAG00000001388pabpc1b9754.207ENSUMAG00000023926-8968.508Ursus_maritimus
ENSPLAG00000001388pabpc1b5978.500ENSVVUG00000015892-9778.500Vulpes_vulpes
ENSPLAG00000001388pabpc1b9945.946ENSXETG00000015439-10045.618Xenopus_tropicalis
ENSPLAG00000001388pabpc1b10092.429ENSXCOG00000019901pabpc1b10092.114Xiphophorus_couchianus
ENSPLAG00000001388pabpc1b10086.593ENSXCOG00000017066pabpc1a10086.751Xiphophorus_couchianus
ENSPLAG00000001388pabpc1b10099.527ENSXMAG00000003753pabpc1b10099.527Xiphophorus_maculatus
ENSPLAG00000001388pabpc1b10090.125ENSXMAG00000002555pabpc1a10089.969Xiphophorus_maculatus

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