EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSPLAG00000001401 (Gene tree)
Gene ID: 106961335
Gene Symbol: sf3b4
Alias: -
Full Name: splicing factor 3b subunit 4
Gene Type: protein_coding
Species: Poecilia_latipinna
Status: putative
Strand: Minus strand
Length: 2483 bases
Position: chrKQ546604.1:65972-68454
Accession: 106961335
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPLAP00000000565	RRM_1	PF00076.22	1.9e-39	1	2
ENSPLAP00000000565	RRM_1	PF00076.22	1.9e-39	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPLAT00000016227	-	1177	XM_015054993	ENSPLAP00000000565	362 (aa)	XP_014910479	-

Gene Model

Click here to download ENSPLAG00000001401's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPLAG00000001401's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSPLAG00000001401	sf3b4	50	32.911	ENSPLAG00000001547	elavl3	94	31.492
ENSPLAG00000001401	sf3b4	50	38.798	ENSPLAG00000004114	pabpc1a	57	38.798
ENSPLAG00000001401	sf3b4	51	31.677	ENSPLAG00000008127	elavl1a	90	30.460
ENSPLAG00000001401	sf3b4	50	38.251	ENSPLAG00000001388	pabpc1b	57	38.251
ENSPLAG00000001401	sf3b4	50	36.842	ENSPLAG00000005203	ELAVL2	69	36.667
ENSPLAG00000001401	sf3b4	51	34.884	ENSPLAG00000008085	elavl4	90	31.285
ENSPLAG00000001401	sf3b4	51	32.941	ENSPLAG00000020810	ELAVL1	100	30.939
ENSPLAG00000001401	sf3b4	73	39.506	ENSPLAG00000017490	-	65	36.957
ENSPLAG00000001401	sf3b4	50	40.437	ENSPLAG00000010112	pabpc4	58	40.437
ENSPLAG00000001401	sf3b4	58	35.714	ENSPLAG00000009390	tia1l	88	36.994

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPLAG00000001401	sf3b4	63	97.368	ENSG00000143368	SF3B4	100	95.263	Homo_sapiens
ENSPLAG00000001401	sf3b4	80	95.848	ENSAPOG00000017647	sf3b4	70	95.730	Acanthochromis_polyacanthus
ENSPLAG00000001401	sf3b4	63	97.368	ENSAMEG00000010073	SF3B4	64	90.476	Ailuropoda_melanoleuca
ENSPLAG00000001401	sf3b4	64	97.835	ENSACIG00000018455	sf3b4	83	86.525	Amphilophus_citrinellus
ENSPLAG00000001401	sf3b4	80	95.502	ENSAOCG00000019801	sf3b4	70	95.374	Amphiprion_ocellaris
ENSPLAG00000001401	sf3b4	80	95.502	ENSAPEG00000010365	sf3b4	70	95.374	Amphiprion_percula
ENSPLAG00000001401	sf3b4	67	99.177	ENSATEG00000012844	sf3b4	66	97.753	Anabas_testudineus
ENSPLAG00000001401	sf3b4	59	100.000	ENSACAG00000010019	SF3B4	65	91.481	Anolis_carolinensis
ENSPLAG00000001401	sf3b4	63	97.368	ENSANAG00000031025	SF3B4	56	95.359	Aotus_nancymaae
ENSPLAG00000001401	sf3b4	78	93.238	ENSACLG00000014260	sf3b4	70	93.238	Astatotilapia_calliptera
ENSPLAG00000001401	sf3b4	67	97.531	ENSAMXG00000008282	sf3b4	66	96.198	Astyanax_mexicanus
ENSPLAG00000001401	sf3b4	63	97.368	ENSBTAG00000012495	SF3B4	64	90.476	Bos_taurus
ENSPLAG00000001401	sf3b4	56	95.545	ENSBTAG00000012793	-	60	89.024	Bos_taurus
ENSPLAG00000001401	sf3b4	73	71.321	WBGene00004723	sap-49	55	81.690	Caenorhabditis_elegans
ENSPLAG00000001401	sf3b4	63	97.368	ENSCAFG00000011617	SF3B4	64	90.476	Canis_familiaris
ENSPLAG00000001401	sf3b4	63	97.368	ENSCAFG00020019775	SF3B4	64	90.476	Canis_lupus_dingo
ENSPLAG00000001401	sf3b4	63	97.368	ENSCHIG00000025663	-	64	90.476	Capra_hircus
ENSPLAG00000001401	sf3b4	80	61.462	ENSCHIG00000006654	-	50	74.627	Capra_hircus
ENSPLAG00000001401	sf3b4	63	97.368	ENSTSYG00000009295	SF3B4	56	95.359	Carlito_syrichta
ENSPLAG00000001401	sf3b4	65	93.548	ENSCAPG00000006451	SF3B4	51	94.475	Cavia_aperea
ENSPLAG00000001401	sf3b4	63	97.368	ENSCPOG00000008267	SF3B4	64	90.476	Cavia_porcellus
ENSPLAG00000001401	sf3b4	82	70.064	ENSCCAG00000019823	-	59	80.000	Cebus_capucinus
ENSPLAG00000001401	sf3b4	63	96.491	ENSCCAG00000021751	-	53	94.515	Cebus_capucinus
ENSPLAG00000001401	sf3b4	63	97.368	ENSCATG00000033114	SF3B4	56	95.359	Cercocebus_atys
ENSPLAG00000001401	sf3b4	63	97.368	ENSCLAG00000015851	SF3B4	64	90.476	Chinchilla_lanigera
ENSPLAG00000001401	sf3b4	63	97.368	ENSCSAG00000018129	SF3B4	56	95.359	Chlorocebus_sabaeus
ENSPLAG00000001401	sf3b4	59	100.000	ENSCPBG00000008041	SF3B4	65	89.706	Chrysemys_picta_bellii
ENSPLAG00000001401	sf3b4	62	88.393	ENSCING00000002337	-	73	78.467	Ciona_intestinalis
ENSPLAG00000001401	sf3b4	57	91.429	ENSCSAVG00000007809	-	89	89.820	Ciona_savignyi
ENSPLAG00000001401	sf3b4	63	97.368	ENSCANG00000035579	SF3B4	56	95.359	Colobus_angolensis_palliatus
ENSPLAG00000001401	sf3b4	63	97.368	ENSCGRG00001003590	Sf3b4	64	90.476	Cricetulus_griseus_chok1gshd
ENSPLAG00000001401	sf3b4	63	97.368	ENSCGRG00000016914	Sf3b4	64	90.476	Cricetulus_griseus_crigri
ENSPLAG00000001401	sf3b4	82	90.365	ENSCSEG00000015258	sf3b4	57	95.203	Cynoglossus_semilaevis
ENSPLAG00000001401	sf3b4	95	95.389	ENSCVAG00000005536	sf3b4	89	95.389	Cyprinodon_variegatus
ENSPLAG00000001401	sf3b4	67	97.531	ENSDARG00000018574	sf3b4	67	95.880	Danio_rerio
ENSPLAG00000001401	sf3b4	81	72.483	ENSDNOG00000037231	-	63	77.043	Dasypus_novemcinctus
ENSPLAG00000001401	sf3b4	61	91.818	ENSDNOG00000048908	-	62	87.259	Dasypus_novemcinctus
ENSPLAG00000001401	sf3b4	63	97.368	ENSDORG00000016366	Sf3b4	64	90.476	Dipodomys_ordii
ENSPLAG00000001401	sf3b4	63	87.281	ENSETEG00000008963	SF3B4	64	82.051	Echinops_telfairi
ENSPLAG00000001401	sf3b4	63	97.368	ENSEASG00005001477	SF3B4	64	90.476	Equus_asinus_asinus
ENSPLAG00000001401	sf3b4	63	97.368	ENSECAG00000024737	SF3B4	64	90.476	Equus_caballus
ENSPLAG00000001401	sf3b4	95	84.770	ENSELUG00000012876	sf3b4	66	95.506	Esox_lucius
ENSPLAG00000001401	sf3b4	63	97.368	ENSFCAG00000010106	SF3B4	64	90.476	Felis_catus
ENSPLAG00000001401	sf3b4	63	97.368	ENSFDAG00000009286	SF3B4	64	90.476	Fukomys_damarensis
ENSPLAG00000001401	sf3b4	95	95.977	ENSFHEG00000008211	sf3b4	51	95.977	Fundulus_heteroclitus
ENSPLAG00000001401	sf3b4	63	98.253	ENSGMOG00000002519	sf3b4	70	95.781	Gadus_morhua
ENSPLAG00000001401	sf3b4	59	100.000	ENSGALG00000013352	SF3B4	65	92.222	Gallus_gallus
ENSPLAG00000001401	sf3b4	94	98.240	ENSGAFG00000010181	sf3b4	87	98.240	Gambusia_affinis
ENSPLAG00000001401	sf3b4	63	99.559	ENSGACG00000003819	sf3b4	66	95.038	Gasterosteus_aculeatus
ENSPLAG00000001401	sf3b4	59	100.000	ENSGAGG00000025055	SF3B4	57	89.706	Gopherus_agassizii
ENSPLAG00000001401	sf3b4	63	97.368	ENSGGOG00000004761	SF3B4	56	95.359	Gorilla_gorilla
ENSPLAG00000001401	sf3b4	85	69.497	ENSGGOG00000038845	-	54	89.151	Gorilla_gorilla
ENSPLAG00000001401	sf3b4	78	93.238	ENSHBUG00000002028	sf3b4	70	93.238	Haplochromis_burtoni
ENSPLAG00000001401	sf3b4	63	97.368	ENSHGLG00000012360	SF3B4	64	90.476	Heterocephalus_glaber_female
ENSPLAG00000001401	sf3b4	63	97.368	ENSHGLG00100008533	SF3B4	64	91.418	Heterocephalus_glaber_male
ENSPLAG00000001401	sf3b4	63	97.357	ENSHCOG00000003014	sf3b4	66	90.494	Hippocampus_comes
ENSPLAG00000001401	sf3b4	67	97.942	ENSIPUG00000012242	Sf3b4	67	95.506	Ictalurus_punctatus
ENSPLAG00000001401	sf3b4	63	97.368	ENSSTOG00000000684	-	64	90.476	Ictidomys_tridecemlineatus
ENSPLAG00000001401	sf3b4	93	60.405	ENSSTOG00000029627	-	60	70.342	Ictidomys_tridecemlineatus
ENSPLAG00000001401	sf3b4	62	70.370	ENSJJAG00000022500	Sf3b4	73	66.667	Jaculus_jaculus
ENSPLAG00000001401	sf3b4	74	97.026	ENSKMAG00000008154	sf3b4	68	97.026	Kryptolebias_marmoratus
ENSPLAG00000001401	sf3b4	64	98.276	ENSLBEG00000026818	sf3b4	67	94.382	Labrus_bergylta
ENSPLAG00000001401	sf3b4	66	94.167	ENSLACG00000004436	SF3B4	73	91.321	Latimeria_chalumnae
ENSPLAG00000001401	sf3b4	66	96.667	ENSLOCG00000009048	sf3b4	57	96.667	Lepisosteus_oculatus
ENSPLAG00000001401	sf3b4	63	97.368	ENSLAFG00000008531	SF3B4	64	90.476	Loxodonta_africana
ENSPLAG00000001401	sf3b4	63	97.368	ENSMFAG00000042395	SF3B4	56	95.359	Macaca_fascicularis
ENSPLAG00000001401	sf3b4	84	65.472	ENSMFAG00000039067	-	60	77.232	Macaca_fascicularis
ENSPLAG00000001401	sf3b4	63	97.368	ENSMMUG00000007256	SF3B4	56	95.359	Macaca_mulatta
ENSPLAG00000001401	sf3b4	63	97.368	ENSMNEG00000031839	SF3B4	56	95.359	Macaca_nemestrina
ENSPLAG00000001401	sf3b4	84	65.147	ENSMNEG00000031526	-	60	76.786	Macaca_nemestrina
ENSPLAG00000001401	sf3b4	63	97.368	ENSMLEG00000038667	SF3B4	56	95.359	Mandrillus_leucophaeus
ENSPLAG00000001401	sf3b4	67	97.942	ENSMAMG00000014692	sf3b4	67	95.880	Mastacembelus_armatus
ENSPLAG00000001401	sf3b4	78	93.238	ENSMZEG00005026741	sf3b4	70	93.238	Maylandia_zebra
ENSPLAG00000001401	sf3b4	59	100.000	ENSMGAG00000000653	SF3B4	65	92.222	Meleagris_gallopavo
ENSPLAG00000001401	sf3b4	63	97.368	ENSMAUG00000015266	Sf3b4	64	90.476	Mesocricetus_auratus
ENSPLAG00000001401	sf3b4	63	97.368	ENSMICG00000044961	SF3B4	64	90.476	Microcebus_murinus
ENSPLAG00000001401	sf3b4	63	97.368	ENSMOCG00000013658	-	64	90.476	Microtus_ochrogaster
ENSPLAG00000001401	sf3b4	57	98.049	ENSMOCG00000014155	-	65	88.258	Microtus_ochrogaster
ENSPLAG00000001401	sf3b4	83	88.963	ENSMMOG00000018032	sf3b4	68	95.131	Mola_mola
ENSPLAG00000001401	sf3b4	63	97.368	ENSMODG00000018767	SF3B4	56	95.359	Monodelphis_domestica
ENSPLAG00000001401	sf3b4	74	95.896	ENSMALG00000006174	sf3b4	66	96.255	Monopterus_albus
ENSPLAG00000001401	sf3b4	63	97.368	MGP_CAROLIEiJ_G0025365	Sf3b4	64	90.110	Mus_caroli
ENSPLAG00000001401	sf3b4	63	97.368	ENSMUSG00000068856	Sf3b4	64	90.476	Mus_musculus
ENSPLAG00000001401	sf3b4	63	97.368	MGP_PahariEiJ_G0026809	Sf3b4	64	90.476	Mus_pahari
ENSPLAG00000001401	sf3b4	63	97.368	MGP_SPRETEiJ_G0026309	Sf3b4	64	90.476	Mus_spretus
ENSPLAG00000001401	sf3b4	63	97.368	ENSMPUG00000005563	SF3B4	64	90.476	Mustela_putorius_furo
ENSPLAG00000001401	sf3b4	63	97.368	ENSMLUG00000010789	SF3B4	64	90.842	Myotis_lucifugus
ENSPLAG00000001401	sf3b4	63	97.368	ENSNGAG00000016337	Sf3b4	64	90.476	Nannospalax_galili
ENSPLAG00000001401	sf3b4	78	93.238	ENSNBRG00000013865	sf3b4	70	93.238	Neolamprologus_brichardi
ENSPLAG00000001401	sf3b4	93	69.075	ENSNLEG00000000537	-	60	86.498	Nomascus_leucogenys
ENSPLAG00000001401	sf3b4	93	47.778	ENSNLEG00000009693	-	80	47.778	Nomascus_leucogenys
ENSPLAG00000001401	sf3b4	63	92.982	ENSOPRG00000010808	SF3B4	64	86.813	Ochotona_princeps
ENSPLAG00000001401	sf3b4	95	57.500	ENSODEG00000008916	-	55	76.415	Octodon_degus
ENSPLAG00000001401	sf3b4	84	69.401	ENSODEG00000003597	-	68	76.923	Octodon_degus
ENSPLAG00000001401	sf3b4	73	95.865	ENSONIG00000002730	sf3b4	66	95.865	Oreochromis_niloticus
ENSPLAG00000001401	sf3b4	72	71.269	ENSOANG00000004768	-	50	81.944	Ornithorhynchus_anatinus
ENSPLAG00000001401	sf3b4	63	97.368	ENSOCUG00000004614	SF3B4	64	90.476	Oryctolagus_cuniculus
ENSPLAG00000001401	sf3b4	82	89.369	ENSORLG00000003062	sf3b4	70	89.706	Oryzias_latipes
ENSPLAG00000001401	sf3b4	82	89.369	ENSORLG00020000687	sf3b4	68	89.706	Oryzias_latipes_hni
ENSPLAG00000001401	sf3b4	82	89.369	ENSORLG00015010989	sf3b4	68	89.706	Oryzias_latipes_hsok
ENSPLAG00000001401	sf3b4	64	96.983	ENSOMEG00000013694	sf3b4	68	94.815	Oryzias_melastigma
ENSPLAG00000001401	sf3b4	63	97.368	ENSOGAG00000006265	SF3B4	64	90.476	Otolemur_garnettii
ENSPLAG00000001401	sf3b4	63	97.368	ENSOARG00000020718	-	64	90.476	Ovis_aries
ENSPLAG00000001401	sf3b4	79	72.391	ENSOARG00000007368	-	57	78.970	Ovis_aries
ENSPLAG00000001401	sf3b4	63	97.368	ENSPPAG00000040904	SF3B4	56	95.359	Pan_paniscus
ENSPLAG00000001401	sf3b4	85	71.517	ENSPPAG00000030024	-	58	85.232	Pan_paniscus
ENSPLAG00000001401	sf3b4	63	97.368	ENSPPRG00000007384	SF3B4	64	90.476	Panthera_pardus
ENSPLAG00000001401	sf3b4	63	97.368	ENSPTIG00000014530	SF3B4	64	90.476	Panthera_tigris_altaica
ENSPLAG00000001401	sf3b4	85	73.955	ENSPTRG00000049727	-	59	85.654	Pan_troglodytes
ENSPLAG00000001401	sf3b4	63	97.368	ENSPTRG00000001243	SF3B4	56	95.359	Pan_troglodytes
ENSPLAG00000001401	sf3b4	63	97.368	ENSPANG00000005126	SF3B4	56	95.359	Papio_anubis
ENSPLAG00000001401	sf3b4	67	97.119	ENSPKIG00000020669	sf3b4	71	95.131	Paramormyrops_kingsleyae
ENSPLAG00000001401	sf3b4	63	97.368	ENSPEMG00000017568	Sf3b4	64	90.476	Peromyscus_maniculatus_bairdii
ENSPLAG00000001401	sf3b4	59	95.305	ENSPMAG00000007842	-	55	90.717	Petromyzon_marinus
ENSPLAG00000001401	sf3b4	63	97.368	ENSPCIG00000008765	SF3B4	56	95.359	Phascolarctos_cinereus
ENSPLAG00000001401	sf3b4	94	100.000	ENSPFOG00000005754	sf3b4	87	100.000	Poecilia_formosa
ENSPLAG00000001401	sf3b4	94	99.413	ENSPMEG00000014452	sf3b4	50	99.413	Poecilia_mexicana
ENSPLAG00000001401	sf3b4	100	93.684	ENSPREG00000011076	sf3b4	94	93.684	Poecilia_reticulata
ENSPLAG00000001401	sf3b4	57	96.635	ENSPCAG00000000392	SF3B4	50	96.635	Procavia_capensis
ENSPLAG00000001401	sf3b4	63	97.368	ENSPCOG00000015399	SF3B4	64	90.476	Propithecus_coquereli
ENSPLAG00000001401	sf3b4	63	97.368	ENSPVAG00000014171	SF3B4	64	90.476	Pteropus_vampyrus
ENSPLAG00000001401	sf3b4	78	93.238	ENSPNYG00000012700	sf3b4	70	93.238	Pundamilia_nyererei
ENSPLAG00000001401	sf3b4	67	97.531	ENSPNAG00000000686	sf3b4	68	95.506	Pygocentrus_nattereri
ENSPLAG00000001401	sf3b4	63	97.368	ENSRNOG00000021181	Sf3b4	64	90.476	Rattus_norvegicus
ENSPLAG00000001401	sf3b4	85	80.124	ENSRBIG00000043392	SF3B4	56	95.359	Rhinopithecus_bieti
ENSPLAG00000001401	sf3b4	63	97.368	ENSRROG00000029366	SF3B4	56	95.359	Rhinopithecus_roxellana
ENSPLAG00000001401	sf3b4	86	63.777	ENSRROG00000028213	-	58	72.489	Rhinopithecus_roxellana
ENSPLAG00000001401	sf3b4	51	37.374	YOR319W	-	92	37.374	Saccharomyces_cerevisiae
ENSPLAG00000001401	sf3b4	63	96.930	ENSSBOG00000012310	-	56	94.937	Saimiri_boliviensis_boliviensis
ENSPLAG00000001401	sf3b4	85	64.263	ENSSBOG00000025174	-	51	73.840	Saimiri_boliviensis_boliviensis
ENSPLAG00000001401	sf3b4	63	92.544	ENSSHAG00000004043	SF3B4	55	90.717	Sarcophilus_harrisii
ENSPLAG00000001401	sf3b4	67	97.119	ENSSFOG00015008864	sf3b4	66	95.131	Scleropages_formosus
ENSPLAG00000001401	sf3b4	82	93.624	ENSSMAG00000006837	sf3b4	67	96.642	Scophthalmus_maximus
ENSPLAG00000001401	sf3b4	73	96.617	ENSSDUG00000012064	sf3b4	66	96.629	Seriola_dumerili
ENSPLAG00000001401	sf3b4	73	96.617	ENSSLDG00000014226	sf3b4	66	96.629	Seriola_lalandi_dorsalis
ENSPLAG00000001401	sf3b4	67	97.531	ENSSPAG00000019219	sf3b4	66	96.255	Stegastes_partitus
ENSPLAG00000001401	sf3b4	85	79.012	ENSSSCG00000006665	-	64	90.476	Sus_scrofa
ENSPLAG00000001401	sf3b4	88	55.108	ENSSSCG00000039440	-	58	62.025	Sus_scrofa
ENSPLAG00000001401	sf3b4	67	94.215	ENSTGUG00000004470	SF3B4	93	95.763	Taeniopygia_guttata
ENSPLAG00000001401	sf3b4	88	88.679	ENSTRUG00000004516	sf3b4	67	95.131	Takifugu_rubripes
ENSPLAG00000001401	sf3b4	73	92.857	ENSTNIG00000009156	sf3b4	68	90.406	Tetraodon_nigroviridis
ENSPLAG00000001401	sf3b4	63	97.368	ENSTTRG00000005217	SF3B4	64	90.476	Tursiops_truncatus
ENSPLAG00000001401	sf3b4	63	97.368	ENSUAMG00000022468	SF3B4	64	90.476	Ursus_americanus
ENSPLAG00000001401	sf3b4	63	97.368	ENSUMAG00000003802	SF3B4	64	90.476	Ursus_maritimus
ENSPLAG00000001401	sf3b4	60	97.222	ENSVPAG00000008152	SF3B4	63	90.038	Vicugna_pacos
ENSPLAG00000001401	sf3b4	62	94.170	ENSVVUG00000022697	-	56	88.390	Vulpes_vulpes
ENSPLAG00000001401	sf3b4	63	97.368	ENSVVUG00000007732	-	70	91.176	Vulpes_vulpes
ENSPLAG00000001401	sf3b4	84	77.961	ENSXETG00000011038	sf3b4	58	94.118	Xenopus_tropicalis
ENSPLAG00000001401	sf3b4	94	98.534	ENSXCOG00000019895	sf3b4	87	98.534	Xiphophorus_couchianus
ENSPLAG00000001401	sf3b4	94	98.827	ENSXMAG00000003772	sf3b4	87	98.827	Xiphophorus_maculatus