EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSPLAG00000001972 (Gene tree)
Gene ID: -
Gene Symbol: scaf4a
Alias: -
Full Name: splicing factor%2C arginine/serine-rich 15-like
Gene Type: protein_coding
Species: Poecilia_latipinna
Status: putative
Strand: Plus strand
Length: 10650 bases
Position: chrKQ545724.1:3069-13718
Accession: 106950580
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPLAP00000001013	RRM_1	PF00076.22	6.7e-08	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPLAT00000015466	-	2617	XM_015037525	ENSPLAP00000001013	815 (aa)	XP_014893011	-

Gene Model

Click here to download ENSPLAG00000001972's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPLAG00000001972's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSPLAG00000001972	scaf4a	100	100.000	ENSPLAG00000017417	-	67	100.000

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPLAG00000001972	scaf4a	91	82.838	ENSAPOG00000002946	scaf4a	67	80.574	Acanthochromis_polyacanthus
ENSPLAG00000001972	scaf4a	91	82.950	ENSAOCG00000000615	scaf4a	67	81.070	Amphiprion_ocellaris
ENSPLAG00000001972	scaf4a	91	82.815	ENSAPEG00000021229	scaf4a	67	80.940	Amphiprion_percula
ENSPLAG00000001972	scaf4a	81	56.901	ENSAPLG00000002509	SCAF4	68	57.923	Anas_platyrhynchos
ENSPLAG00000001972	scaf4a	67	61.135	ENSACAG00000002569	SCAF4	55	58.148	Anolis_carolinensis
ENSPLAG00000001972	scaf4a	74	53.333	ENSCAFG00020026019	SCAF4	66	62.718	Canis_lupus_dingo
ENSPLAG00000001972	scaf4a	82	45.809	ENSCSEG00000012808	-	78	49.847	Cynoglossus_semilaevis
ENSPLAG00000001972	scaf4a	96	69.086	ENSCSEG00000019549	scaf4a	68	69.504	Cynoglossus_semilaevis
ENSPLAG00000001972	scaf4a	69	55.510	ENSCVAG00000009142	scaf4b	58	75.540	Cyprinodon_variegatus
ENSPLAG00000001972	scaf4a	96	56.501	ENSDARG00000077093	scaf4a	67	57.592	Danio_rerio
ENSPLAG00000001972	scaf4a	63	83.854	ENSELUG00000009909	scaf4a	61	75.984	Esox_lucius
ENSPLAG00000001972	scaf4a	97	79.623	ENSFHEG00000017866	scaf4a	63	86.065	Fundulus_heteroclitus
ENSPLAG00000001972	scaf4a	81	57.223	ENSGALG00000033965	SCAF4	64	59.452	Gallus_gallus
ENSPLAG00000001972	scaf4a	99	96.107	ENSGAFG00000019460	scaf4a	92	96.107	Gambusia_affinis
ENSPLAG00000001972	scaf4a	86	72.424	ENSGACG00000020580	scaf4a	71	73.186	Gasterosteus_aculeatus
ENSPLAG00000001972	scaf4a	91	82.027	ENSHBUG00000007920	scaf4a	66	79.974	Haplochromis_burtoni
ENSPLAG00000001972	scaf4a	53	79.861	ENSHGLG00000010582	SCAF4	67	56.472	Heterocephalus_glaber_female
ENSPLAG00000001972	scaf4a	51	79.861	ENSHGLG00100009441	SCAF4	66	55.814	Heterocephalus_glaber_male
ENSPLAG00000001972	scaf4a	53	68.212	ENSIPUG00000019311	-	57	68.794	Ictalurus_punctatus
ENSPLAG00000001972	scaf4a	85	69.811	ENSIPUG00000011285	scaf4	73	71.154	Ictalurus_punctatus
ENSPLAG00000001972	scaf4a	92	76.738	ENSLBEG00000014675	scaf4a	65	79.887	Labrus_bergylta
ENSPLAG00000001972	scaf4a	78	51.323	ENSLACG00000013913	SCAF4	61	56.592	Latimeria_chalumnae
ENSPLAG00000001972	scaf4a	62	70.520	ENSLAFG00000010710	SCAF4	53	60.370	Loxodonta_africana
ENSPLAG00000001972	scaf4a	62	70.962	ENSMAMG00000013223	scaf4a	54	74.633	Mastacembelus_armatus
ENSPLAG00000001972	scaf4a	95	79.464	ENSMZEG00005024349	scaf4a	71	77.875	Maylandia_zebra
ENSPLAG00000001972	scaf4a	80	56.534	ENSMGAG00000014515	SCAF4	67	57.540	Meleagris_gallopavo
ENSPLAG00000001972	scaf4a	64	81.100	ENSMALG00000013825	scaf4a	54	81.100	Monopterus_albus
ENSPLAG00000001972	scaf4a	61	73.780	MGP_CAROLIEiJ_G0020944	Scaf4	55	61.111	Mus_caroli
ENSPLAG00000001972	scaf4a	61	74.390	ENSMUSG00000022983	Scaf4	57	61.481	Mus_musculus
ENSPLAG00000001972	scaf4a	61	73.780	MGP_PahariEiJ_G0016649	Scaf4	56	61.481	Mus_pahari
ENSPLAG00000001972	scaf4a	64	74.390	MGP_SPRETEiJ_G0021850	Scaf4	57	61.481	Mus_spretus
ENSPLAG00000001972	scaf4a	91	81.757	ENSONIG00000004687	scaf4a	72	77.053	Oreochromis_niloticus
ENSPLAG00000001972	scaf4a	94	78.646	ENSORLG00000004384	scaf4a	67	78.278	Oryzias_latipes
ENSPLAG00000001972	scaf4a	96	75.383	ENSORLG00020011857	scaf4a	66	76.394	Oryzias_latipes_hni
ENSPLAG00000001972	scaf4a	94	78.906	ENSORLG00015017880	scaf4a	67	78.406	Oryzias_latipes_hsok
ENSPLAG00000001972	scaf4a	94	77.995	ENSOMEG00000014482	scaf4a	66	77.378	Oryzias_melastigma
ENSPLAG00000001972	scaf4a	84	63.908	ENSPKIG00000022408	scaf4a	99	65.129	Paramormyrops_kingsleyae
ENSPLAG00000001972	scaf4a	64	70.850	ENSPMGG00000016741	scaf4a	50	68.182	Periophthalmus_magnuspinnatus
ENSPLAG00000001972	scaf4a	88	96.823	ENSPFOG00000017156	scaf4a	78	91.656	Poecilia_formosa
ENSPLAG00000001972	scaf4a	68	56.584	ENSPREG00000013510	scaf4b	55	60.541	Poecilia_reticulata
ENSPLAG00000001972	scaf4a	96	57.488	ENSPNAG00000016892	scaf4a	71	62.484	Pygocentrus_nattereri
ENSPLAG00000001972	scaf4a	61	74.390	ENSRNOG00000002104	Scaf4	54	64.844	Rattus_norvegicus
ENSPLAG00000001972	scaf4a	96	73.082	ENSSMAG00000017901	scaf4a	65	75.777	Scophthalmus_maximus
ENSPLAG00000001972	scaf4a	84	48.847	ENSSMAG00000003738	scaf4b	81	47.639	Scophthalmus_maximus
ENSPLAG00000001972	scaf4a	92	81.374	ENSSDUG00000012918	scaf4a	67	80.362	Seriola_dumerili
ENSPLAG00000001972	scaf4a	92	81.589	ENSSLDG00000021671	scaf4a	67	80.570	Seriola_lalandi_dorsalis
ENSPLAG00000001972	scaf4a	62	73.780	ENSSSCG00000021023	SCAF4	57	60.741	Sus_scrofa
ENSPLAG00000001972	scaf4a	84	47.093	ENSTRUG00000009536	-	54	75.540	Takifugu_rubripes