EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSPLAG00000002058 (Gene tree)
Gene ID: 106942097
Gene Symbol: srrm1 (1 of many)
Alias: -
Full Name: serine/arginine repetitive matrix protein 1-like
Gene Type: protein_coding
Species: Poecilia_latipinna
Status: putative
Strand: Plus strand
Length: 11508 bases
Position: chrKQ549228.1:5596-17103
Accession: 106942097
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPLAP00000019705	PWI	PF01480.17	1.3e-30	1	1
ENSPLAP00000001067	PWI	PF01480.17	2.8e-14	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPLAT00000015369	-	306	-	ENSPLAP00000001067	101 (aa)	-	-
ENSPLAT00000015363	-	2415	XM_015025276	ENSPLAP00000019705	804 (aa)	XP_014880762	-

Gene Model

Click here to download ENSPLAG00000002058's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPLAG00000002058's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSPLAG00000002058	srrm1	100	100.000	ENSPLAG00000006807	srrm1	100	100.000

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPLAG00000002058	srrm1	77	100.000	ENSAPOG00000001170	srrm1	99	100.000	Acanthochromis_polyacanthus
ENSPLAG00000002058	srrm1	77	96.154	ENSDARG00000001244	srrm1	99	96.154	Danio_rerio
ENSPLAG00000002058	srrm1	77	97.436	ENSELUG00000003385	srrm1	99	97.436	Esox_lucius
ENSPLAG00000002058	srrm1	77	100.000	ENSGACG00000007266	srrm1	95	86.979	Gasterosteus_aculeatus
ENSPLAG00000002058	srrm1	77	96.154	ENSHCOG00000012829	srrm1	68	76.923	Hippocampus_comes
ENSPLAG00000002058	srrm1	77	100.000	ENSLBEG00000013936	srrm1	68	80.224	Labrus_bergylta
ENSPLAG00000002058	srrm1	81	96.341	ENSOMEG00000014110	srrm1	78	96.341	Oryzias_melastigma
ENSPLAG00000002058	srrm1	77	98.718	ENSPKIG00000008252	srrm1	60	77.068	Paramormyrops_kingsleyae
ENSPLAG00000002058	srrm1	100	91.176	ENSPREG00000002652	srrm1	57	94.888	Poecilia_reticulata
ENSPLAG00000002058	srrm1	77	96.154	ENSTRUG00000002519	srrm1	65	78.358	Takifugu_rubripes
ENSPLAG00000002058	srrm1	100	97.030	ENSXCOG00000011828	srrm1	98	99.153	Xiphophorus_couchianus
ENSPLAG00000002058	srrm1	77	100.000	ENSXMAG00000018863	srrm1	58	91.935	Xiphophorus_maculatus