EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSPLAG00000002293 (Gene tree)
Gene ID: 106950566
Gene Symbol: sf3b1
Alias: -
Full Name: splicing factor 3b subunit 1
Gene Type: protein_coding
Species: Poecilia_latipinna
Status: putative
Strand: Minus strand
Length: 18949 bases
Position: chrKQ545723.1:65705-84653
Accession: 106950566
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPLAP00000001146	SF3b1	PF08920.10	7.4e-48	1	1
ENSPLAP00000001159	SF3b1	PF08920.10	7.4e-48	1	1
ENSPLAP00000001175	SF3b1	PF08920.10	7.4e-48	1	1
ENSPLAP00000001182	SF3b1	PF08920.10	7.4e-48	1	1
ENSPLAP00000001197	SF3b1	PF08920.10	7.4e-48	1	1
ENSPLAP00000001210	SF3b1	PF08920.10	7.4e-48	1	1
ENSPLAP00000001221	SF3b1	PF08920.10	7.4e-48	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPLAT00000015179	-	4471	-	ENSPLAP00000001182	1315 (aa)	-	UPI00072E5CF9
ENSPLAT00000015137	-	4471	-	ENSPLAP00000001210	1315 (aa)	-	UPI00072E5CF9
ENSPLAT00000015112	-	4471	-	ENSPLAP00000001221	1315 (aa)	-	UPI00072E5CF9
ENSPLAT00000015152	-	4471	-	ENSPLAP00000001197	1315 (aa)	-	UPI00072E5CF9
ENSPLAT00000015223	-	4471	-	ENSPLAP00000001159	1315 (aa)	-	UPI00072E5CF9
ENSPLAT00000015207	-	4471	-	ENSPLAP00000001175	1315 (aa)	-	UPI00072E5CF9
ENSPLAT00000015248	-	4471	XM_015037505	ENSPLAP00000001146	1315 (aa)	XP_014892991	UPI00072E5CF9

Gene Model

Click here to download ENSPLAG00000002293's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPLAG00000002293's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPLAG00000002293	sf3b1	100	93.394	ENSG00000115524	SF3B1	100	93.394	Homo_sapiens
ENSPLAG00000002293	sf3b1	100	98.556	ENSAPOG00000011894	sf3b1	100	98.556	Acanthochromis_polyacanthus
ENSPLAG00000002293	sf3b1	99	93.277	ENSAMEG00000013809	SF3B1	99	93.277	Ailuropoda_melanoleuca
ENSPLAG00000002293	sf3b1	100	97.567	ENSACIG00000020910	sf3b1	97	97.567	Amphilophus_citrinellus
ENSPLAG00000002293	sf3b1	100	98.556	ENSAOCG00000004478	sf3b1	100	98.556	Amphiprion_ocellaris
ENSPLAG00000002293	sf3b1	100	98.556	ENSAPEG00000012937	sf3b1	100	98.556	Amphiprion_percula
ENSPLAG00000002293	sf3b1	100	98.783	ENSATEG00000020435	sf3b1	100	98.783	Anabas_testudineus
ENSPLAG00000002293	sf3b1	99	93.721	ENSAPLG00000003993	SF3B1	99	93.721	Anas_platyrhynchos
ENSPLAG00000002293	sf3b1	100	93.541	ENSACAG00000009612	SF3B1	100	93.541	Anolis_carolinensis
ENSPLAG00000002293	sf3b1	100	93.394	ENSANAG00000021577	SF3B1	100	94.692	Aotus_nancymaae
ENSPLAG00000002293	sf3b1	100	97.414	ENSACLG00000023470	sf3b1	100	97.414	Astatotilapia_calliptera
ENSPLAG00000002293	sf3b1	100	96.887	ENSAMXG00000002219	sf3b1	100	96.887	Astyanax_mexicanus
ENSPLAG00000002293	sf3b1	100	93.394	ENSBTAG00000008915	SF3B1	100	93.394	Bos_taurus
ENSPLAG00000002293	sf3b1	99	64.428	WBGene00011605	sftb-1	99	64.576	Caenorhabditis_elegans
ENSPLAG00000002293	sf3b1	100	93.394	ENSCJAG00000003902	SF3B1	100	93.394	Callithrix_jacchus
ENSPLAG00000002293	sf3b1	100	93.394	ENSCAFG00000010826	SF3B1	100	93.394	Canis_familiaris
ENSPLAG00000002293	sf3b1	100	93.394	ENSCAFG00020004750	SF3B1	100	93.394	Canis_lupus_dingo
ENSPLAG00000002293	sf3b1	100	93.394	ENSCHIG00000015226	SF3B1	100	93.394	Capra_hircus
ENSPLAG00000002293	sf3b1	100	93.318	ENSTSYG00000009214	SF3B1	100	93.318	Carlito_syrichta
ENSPLAG00000002293	sf3b1	99	93.222	ENSCAPG00000006547	SF3B1	99	93.222	Cavia_aperea
ENSPLAG00000002293	sf3b1	99	93.344	ENSCPOG00000009353	SF3B1	100	93.344	Cavia_porcellus
ENSPLAG00000002293	sf3b1	100	93.394	ENSCCAG00000020506	SF3B1	100	93.394	Cebus_capucinus
ENSPLAG00000002293	sf3b1	100	93.394	ENSCATG00000035735	SF3B1	100	93.394	Cercocebus_atys
ENSPLAG00000002293	sf3b1	99	93.349	ENSCLAG00000014767	SF3B1	99	93.349	Chinchilla_lanigera
ENSPLAG00000002293	sf3b1	100	93.394	ENSCSAG00000011505	SF3B1	100	93.394	Chlorocebus_sabaeus
ENSPLAG00000002293	sf3b1	76	92.474	ENSCHOG00000009860	SF3B1	76	92.474	Choloepus_hoffmanni
ENSPLAG00000002293	sf3b1	100	93.688	ENSCPBG00000021902	SF3B1	99	94.781	Chrysemys_picta_bellii
ENSPLAG00000002293	sf3b1	68	78.299	ENSCING00000002558	-	99	78.738	Ciona_intestinalis
ENSPLAG00000002293	sf3b1	99	80.135	ENSCSAVG00000002559	-	99	80.135	Ciona_savignyi
ENSPLAG00000002293	sf3b1	100	93.394	ENSCANG00000029415	SF3B1	100	93.394	Colobus_angolensis_palliatus
ENSPLAG00000002293	sf3b1	100	93.394	ENSCGRG00001016990	Sf3b1	100	93.394	Cricetulus_griseus_chok1gshd
ENSPLAG00000002293	sf3b1	100	93.394	ENSCGRG00000005301	Sf3b1	100	93.394	Cricetulus_griseus_crigri
ENSPLAG00000002293	sf3b1	100	93.992	ENSCSEG00000003860	sf3b1	100	93.992	Cynoglossus_semilaevis
ENSPLAG00000002293	sf3b1	96	99.604	ENSCVAG00000003680	sf3b1	99	99.604	Cyprinodon_variegatus
ENSPLAG00000002293	sf3b1	100	96.122	ENSDARG00000056138	sf3b1	100	96.122	Danio_rerio
ENSPLAG00000002293	sf3b1	100	93.323	ENSDNOG00000011754	SF3B1	100	93.323	Dasypus_novemcinctus
ENSPLAG00000002293	sf3b1	99	91.431	ENSDORG00000002399	Sf3b1	100	91.354	Dipodomys_ordii
ENSPLAG00000002293	sf3b1	100	75.733	FBgn0031266	Sf3b1	100	75.733	Drosophila_melanogaster
ENSPLAG00000002293	sf3b1	83	92.301	ENSETEG00000009188	SF3B1	100	92.301	Echinops_telfairi
ENSPLAG00000002293	sf3b1	99	85.965	ENSEBUG00000004325	sf3b1	100	88.630	Eptatretus_burgeri
ENSPLAG00000002293	sf3b1	100	93.394	ENSEASG00005020159	SF3B1	98	93.394	Equus_asinus_asinus
ENSPLAG00000002293	sf3b1	100	93.394	ENSECAG00000021657	SF3B1	98	93.394	Equus_caballus
ENSPLAG00000002293	sf3b1	87	100.000	ENSEEUG00000000836	SF3B1	81	100.000	Erinaceus_europaeus
ENSPLAG00000002293	sf3b1	100	96.073	ENSELUG00000005977	sf3b1	98	96.073	Esox_lucius
ENSPLAG00000002293	sf3b1	100	93.394	ENSFCAG00000005038	SF3B1	100	93.394	Felis_catus
ENSPLAG00000002293	sf3b1	99	93.645	ENSFALG00000004281	SF3B1	99	93.645	Ficedula_albicollis
ENSPLAG00000002293	sf3b1	100	93.394	ENSFDAG00000017510	SF3B1	100	93.394	Fukomys_damarensis
ENSPLAG00000002293	sf3b1	100	98.327	ENSFHEG00000014333	sf3b1	100	98.327	Fundulus_heteroclitus
ENSPLAG00000002293	sf3b1	100	95.524	ENSGMOG00000006773	sf3b1	100	95.903	Gadus_morhua
ENSPLAG00000002293	sf3b1	100	93.764	ENSGALG00000008038	SF3B1	100	93.764	Gallus_gallus
ENSPLAG00000002293	sf3b1	98	99.614	ENSGAFG00000000704	sf3b1	100	99.614	Gambusia_affinis
ENSPLAG00000002293	sf3b1	100	96.887	ENSGACG00000008839	sf3b1	100	96.887	Gasterosteus_aculeatus
ENSPLAG00000002293	sf3b1	100	93.051	ENSGAGG00000017478	SF3B1	100	93.051	Gopherus_agassizii
ENSPLAG00000002293	sf3b1	99	88.064	ENSGGOG00000009264	SF3B1	99	88.141	Gorilla_gorilla
ENSPLAG00000002293	sf3b1	99	97.487	ENSHBUG00000007705	sf3b1	99	97.487	Haplochromis_burtoni
ENSPLAG00000002293	sf3b1	99	93.349	ENSHGLG00000008285	-	99	93.349	Heterocephalus_glaber_female
ENSPLAG00000002293	sf3b1	99	91.361	ENSHGLG00100005535	-	99	91.361	Heterocephalus_glaber_male
ENSPLAG00000002293	sf3b1	100	97.201	ENSHCOG00000016775	sf3b1	100	97.201	Hippocampus_comes
ENSPLAG00000002293	sf3b1	100	96.657	ENSIPUG00000013171	sf3b1	100	96.657	Ictalurus_punctatus
ENSPLAG00000002293	sf3b1	100	93.394	ENSSTOG00000011034	SF3B1	100	93.394	Ictidomys_tridecemlineatus
ENSPLAG00000002293	sf3b1	99	93.323	ENSJJAG00000010903	Sf3b1	99	93.323	Jaculus_jaculus
ENSPLAG00000002293	sf3b1	100	97.877	ENSKMAG00000004009	sf3b1	100	97.877	Kryptolebias_marmoratus
ENSPLAG00000002293	sf3b1	100	97.034	ENSLBEG00000022208	sf3b1	100	97.034	Labrus_bergylta
ENSPLAG00000002293	sf3b1	99	90.274	ENSLACG00000014832	SF3B1	99	90.350	Latimeria_chalumnae
ENSPLAG00000002293	sf3b1	100	95.386	ENSLOCG00000003899	sf3b1	100	95.386	Lepisosteus_oculatus
ENSPLAG00000002293	sf3b1	100	93.394	ENSLAFG00000001956	SF3B1	100	93.394	Loxodonta_africana
ENSPLAG00000002293	sf3b1	99	93.349	ENSMMUG00000022430	SF3B1	99	93.349	Macaca_mulatta
ENSPLAG00000002293	sf3b1	100	93.394	ENSMNEG00000042333	SF3B1	100	94.692	Macaca_nemestrina
ENSPLAG00000002293	sf3b1	94	88.638	ENSMLEG00000026141	SF3B1	98	88.585	Mandrillus_leucophaeus
ENSPLAG00000002293	sf3b1	100	98.479	ENSMAMG00000010241	sf3b1	100	98.479	Mastacembelus_armatus
ENSPLAG00000002293	sf3b1	100	97.414	ENSMZEG00005021254	sf3b1	100	97.414	Maylandia_zebra
ENSPLAG00000002293	sf3b1	99	93.109	ENSMGAG00000007017	SF3B1	99	93.109	Meleagris_gallopavo
ENSPLAG00000002293	sf3b1	99	89.144	ENSMAUG00000009071	Sf3b1	99	89.144	Mesocricetus_auratus
ENSPLAG00000002293	sf3b1	100	93.394	ENSMICG00000013879	SF3B1	100	93.394	Microcebus_murinus
ENSPLAG00000002293	sf3b1	99	89.076	ENSMOCG00000000455	Sf3b1	99	89.076	Microtus_ochrogaster
ENSPLAG00000002293	sf3b1	84	97.818	ENSMMOG00000000475	sf3b1	100	97.818	Mola_mola
ENSPLAG00000002293	sf3b1	100	92.938	ENSMODG00000012275	SF3B1	100	92.938	Monodelphis_domestica
ENSPLAG00000002293	sf3b1	100	98.175	ENSMALG00000017211	sf3b1	100	98.175	Monopterus_albus
ENSPLAG00000002293	sf3b1	100	93.394	MGP_CAROLIEiJ_G0014141	Sf3b1	100	93.394	Mus_caroli
ENSPLAG00000002293	sf3b1	100	93.394	ENSMUSG00000025982	Sf3b1	100	93.394	Mus_musculus
ENSPLAG00000002293	sf3b1	100	93.394	MGP_SPRETEiJ_G0014947	Sf3b1	100	93.394	Mus_spretus
ENSPLAG00000002293	sf3b1	100	93.394	ENSMPUG00000007799	SF3B1	100	93.394	Mustela_putorius_furo
ENSPLAG00000002293	sf3b1	100	92.255	ENSMLUG00000000840	SF3B1	100	92.255	Myotis_lucifugus
ENSPLAG00000002293	sf3b1	99	93.069	ENSNGAG00000021884	-	100	93.069	Nannospalax_galili
ENSPLAG00000002293	sf3b1	100	92.489	ENSNBRG00000015816	sf3b1	100	92.553	Neolamprologus_brichardi
ENSPLAG00000002293	sf3b1	100	93.394	ENSNLEG00000006861	SF3B1	100	93.394	Nomascus_leucogenys
ENSPLAG00000002293	sf3b1	69	99.717	ENSMEUG00000015848	-	66	99.717	Notamacropus_eugenii
ENSPLAG00000002293	sf3b1	100	80.906	ENSOPRG00000008596	SF3B1	100	81.055	Ochotona_princeps
ENSPLAG00000002293	sf3b1	100	93.394	ENSODEG00000011153	-	100	93.394	Octodon_degus
ENSPLAG00000002293	sf3b1	100	97.414	ENSONIG00000013758	sf3b1	100	97.414	Oreochromis_niloticus
ENSPLAG00000002293	sf3b1	82	95.756	ENSOCUG00000012722	-	96	95.756	Oryctolagus_cuniculus
ENSPLAG00000002293	sf3b1	100	98.099	ENSORLG00000020219	sf3b1	100	98.099	Oryzias_latipes
ENSPLAG00000002293	sf3b1	100	98.099	ENSORLG00020001746	sf3b1	100	98.099	Oryzias_latipes_hni
ENSPLAG00000002293	sf3b1	64	96.682	ENSORLG00015001759	sf3b1	98	96.682	Oryzias_latipes_hsok
ENSPLAG00000002293	sf3b1	100	98.327	ENSOMEG00000019231	sf3b1	100	98.327	Oryzias_melastigma
ENSPLAG00000002293	sf3b1	100	93.394	ENSOARG00000015374	SF3B1	100	93.394	Ovis_aries
ENSPLAG00000002293	sf3b1	100	93.394	ENSPPAG00000035007	SF3B1	100	93.394	Pan_paniscus
ENSPLAG00000002293	sf3b1	100	93.394	ENSPPRG00000009090	SF3B1	100	93.394	Panthera_pardus
ENSPLAG00000002293	sf3b1	100	93.394	ENSPTIG00000021557	SF3B1	100	93.394	Panthera_tigris_altaica
ENSPLAG00000002293	sf3b1	99	86.117	ENSPTRG00000012771	SF3B1	99	86.117	Pan_troglodytes
ENSPLAG00000002293	sf3b1	100	93.394	ENSPANG00000013417	SF3B1	100	93.394	Papio_anubis
ENSPLAG00000002293	sf3b1	100	95.827	ENSPKIG00000000784	sf3b1	100	95.827	Paramormyrops_kingsleyae
ENSPLAG00000002293	sf3b1	99	92.490	ENSPSIG00000017222	SF3B1	98	92.490	Pelodiscus_sinensis
ENSPLAG00000002293	sf3b1	91	97.565	ENSPMGG00000004330	sf3b1	99	97.565	Periophthalmus_magnuspinnatus
ENSPLAG00000002293	sf3b1	99	93.349	ENSPEMG00000010699	Sf3b1	100	93.349	Peromyscus_maniculatus_bairdii
ENSPLAG00000002293	sf3b1	100	88.813	ENSPMAG00000001311	sf3b1	100	89.116	Petromyzon_marinus
ENSPLAG00000002293	sf3b1	100	92.938	ENSPCIG00000010642	SF3B1	100	92.938	Phascolarctos_cinereus
ENSPLAG00000002293	sf3b1	100	99.848	ENSPFOG00000000073	sf3b1	100	99.848	Poecilia_formosa
ENSPLAG00000002293	sf3b1	100	99.924	ENSPMEG00000000446	sf3b1	98	99.924	Poecilia_mexicana
ENSPLAG00000002293	sf3b1	100	99.772	ENSPREG00000019652	sf3b1	100	99.772	Poecilia_reticulata
ENSPLAG00000002293	sf3b1	82	96.676	ENSPPYG00000013044	SF3B1	95	96.676	Pongo_abelii
ENSPLAG00000002293	sf3b1	100	93.242	ENSPCAG00000009292	SF3B1	100	93.242	Procavia_capensis
ENSPLAG00000002293	sf3b1	100	93.394	ENSPCOG00000024074	SF3B1	100	93.394	Propithecus_coquereli
ENSPLAG00000002293	sf3b1	100	93.394	ENSPVAG00000008302	SF3B1	100	93.394	Pteropus_vampyrus
ENSPLAG00000002293	sf3b1	100	97.338	ENSPNYG00000014939	sf3b1	100	97.338	Pundamilia_nyererei
ENSPLAG00000002293	sf3b1	100	96.887	ENSPNAG00000008288	sf3b1	100	96.887	Pygocentrus_nattereri
ENSPLAG00000002293	sf3b1	100	93.394	ENSRNOG00000013516	Sf3b1	100	93.394	Rattus_norvegicus
ENSPLAG00000002293	sf3b1	99	89.658	ENSRBIG00000026096	SF3B1	100	89.658	Rhinopithecus_bieti
ENSPLAG00000002293	sf3b1	100	93.394	ENSRROG00000031308	SF3B1	100	93.394	Rhinopithecus_roxellana
ENSPLAG00000002293	sf3b1	100	93.394	ENSSBOG00000020080	SF3B1	100	93.394	Saimiri_boliviensis_boliviensis
ENSPLAG00000002293	sf3b1	100	92.938	ENSSHAG00000017564	SF3B1	100	92.938	Sarcophilus_harrisii
ENSPLAG00000002293	sf3b1	100	96.353	ENSSFOG00015021535	sf3b1	100	96.353	Scleropages_formosus
ENSPLAG00000002293	sf3b1	99	97.572	ENSSMAG00000013977	sf3b1	99	97.572	Scophthalmus_maximus
ENSPLAG00000002293	sf3b1	100	98.707	ENSSDUG00000017422	sf3b1	100	98.707	Seriola_dumerili
ENSPLAG00000002293	sf3b1	100	98.783	ENSSLDG00000019495	sf3b1	100	98.783	Seriola_lalandi_dorsalis
ENSPLAG00000002293	sf3b1	75	98.415	ENSSARG00000007016	SF3B1	75	98.415	Sorex_araneus
ENSPLAG00000002293	sf3b1	100	93.384	ENSSPUG00000000410	SF3B1	100	93.384	Sphenodon_punctatus
ENSPLAG00000002293	sf3b1	100	98.403	ENSSPAG00000010451	sf3b1	99	98.403	Stegastes_partitus
ENSPLAG00000002293	sf3b1	91	93.095	ENSSSCG00000016075	SF3B1	100	94.692	Sus_scrofa
ENSPLAG00000002293	sf3b1	100	93.764	ENSTGUG00000010553	SF3B1	100	93.764	Taeniopygia_guttata
ENSPLAG00000002293	sf3b1	100	97.795	ENSTRUG00000015534	sf3b1	100	97.795	Takifugu_rubripes
ENSPLAG00000002293	sf3b1	84	97.004	ENSTBEG00000008714	SF3B1	93	97.004	Tupaia_belangeri
ENSPLAG00000002293	sf3b1	92	93.047	ENSTTRG00000003414	SF3B1	92	93.047	Tursiops_truncatus
ENSPLAG00000002293	sf3b1	94	83.604	ENSUAMG00000018506	SF3B1	99	97.368	Ursus_americanus
ENSPLAG00000002293	sf3b1	100	93.394	ENSUMAG00000020945	SF3B1	100	93.394	Ursus_maritimus
ENSPLAG00000002293	sf3b1	95	93.171	ENSVPAG00000005798	SF3B1	96	93.171	Vicugna_pacos
ENSPLAG00000002293	sf3b1	100	93.394	ENSVVUG00000025948	SF3B1	95	93.394	Vulpes_vulpes
ENSPLAG00000002293	sf3b1	100	91.951	ENSXETG00000013339	sf3b1	100	91.951	Xenopus_tropicalis
ENSPLAG00000002293	sf3b1	100	95.057	ENSXCOG00000018086	sf3b1	100	95.361	Xiphophorus_couchianus
ENSPLAG00000002293	sf3b1	100	99.620	ENSXMAG00000007369	sf3b1	100	99.620	Xiphophorus_maculatus