EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSPLAG00000002887 (Gene tree)
Gene ID: -
Gene Symbol: chd3
Alias: -
Full Name: chromodomain-helicase-DNA-binding protein 3-like
Gene Type: protein_coding
Species: Poecilia_latipinna
Status: putative
Strand: Minus strand
Length: 29269 bases
Position: chrKQ545979.1:94009-123277
Accession: 106954568
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPLAP00000020088	ResIII	PF04851.15	2e-06	1	1
ENSPLAP00000020096	ResIII	PF04851.15	3.6e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPLAT00000014431	-	3378	-	ENSPLAP00000020088	1125 (aa)	-	-
ENSPLAT00000014399	-	5403	XM_015044173	ENSPLAP00000020096	1800 (aa)	XP_014899659	-

Gene Model

Click here to download ENSPLAG00000002887's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPLAG00000002887's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSPLAG00000002887	chd3	83	80.556	ENSPLAG00000005343	chd5	80	78.279
ENSPLAG00000002887	chd3	93	65.488	ENSPLAG00000012712	chd4a	94	65.006
ENSPLAG00000002887	chd3	90	76.856	ENSPLAG00000004006	-	85	75.862

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPLAG00000002887	chd3	96	83.133	ENSG00000170004	CHD3	86	83.133	Homo_sapiens
ENSPLAG00000002887	chd3	84	92.575	ENSAPOG00000005614	chd3	99	84.656	Acanthochromis_polyacanthus
ENSPLAG00000002887	chd3	64	82.030	ENSAMEG00000003025	-	85	81.270	Ailuropoda_melanoleuca
ENSPLAG00000002887	chd3	88	84.869	ENSACIG00000019671	chd3	99	85.662	Amphilophus_citrinellus
ENSPLAG00000002887	chd3	97	93.976	ENSAOCG00000023784	chd3	99	86.062	Amphiprion_ocellaris
ENSPLAG00000002887	chd3	97	94.378	ENSAPEG00000006341	chd3	86	94.422	Amphiprion_percula
ENSPLAG00000002887	chd3	94	94.239	ENSATEG00000000848	chd3	99	81.160	Anabas_testudineus
ENSPLAG00000002887	chd3	94	86.000	ENSACAG00000004276	CHD3	84	86.000	Anolis_carolinensis
ENSPLAG00000002887	chd3	96	83.534	ENSANAG00000034323	CHD3	89	83.534	Aotus_nancymaae
ENSPLAG00000002887	chd3	92	90.458	ENSACLG00000009222	chd3	90	91.031	Astatotilapia_calliptera
ENSPLAG00000002887	chd3	96	83.871	ENSBTAG00000014377	CHD3	87	83.871	Bos_taurus
ENSPLAG00000002887	chd3	96	83.534	ENSCJAG00000014766	CHD3	86	83.534	Callithrix_jacchus
ENSPLAG00000002887	chd3	98	71.205	ENSCAFG00000016859	CHD3	86	83.401	Canis_familiaris
ENSPLAG00000002887	chd3	94	74.060	ENSCAFG00020007422	CHD3	89	83.401	Canis_lupus_dingo
ENSPLAG00000002887	chd3	96	83.806	ENSCHIG00000016737	CHD3	87	83.806	Capra_hircus
ENSPLAG00000002887	chd3	98	72.343	ENSTSYG00000035658	CHD3	85	87.826	Carlito_syrichta
ENSPLAG00000002887	chd3	98	68.260	ENSCAPG00000014864	CHD3	86	83.333	Cavia_aperea
ENSPLAG00000002887	chd3	96	83.333	ENSCPOG00000022653	CHD3	86	83.333	Cavia_porcellus
ENSPLAG00000002887	chd3	96	83.534	ENSCCAG00000034792	CHD3	86	83.534	Cebus_capucinus
ENSPLAG00000002887	chd3	96	83.534	ENSCATG00000041717	CHD3	86	83.534	Cercocebus_atys
ENSPLAG00000002887	chd3	96	82.996	ENSCLAG00000010523	CHD3	87	82.996	Chinchilla_lanigera
ENSPLAG00000002887	chd3	96	83.534	ENSCSAG00000011122	CHD3	87	83.534	Chlorocebus_sabaeus
ENSPLAG00000002887	chd3	88	93.151	ENSCPBG00000011966	CHD3	93	93.197	Chrysemys_picta_bellii
ENSPLAG00000002887	chd3	96	83.534	ENSCANG00000037641	CHD3	89	83.534	Colobus_angolensis_palliatus
ENSPLAG00000002887	chd3	98	72.057	ENSCGRG00001011306	Chd3	87	83.401	Cricetulus_griseus_chok1gshd
ENSPLAG00000002887	chd3	94	71.024	ENSCGRG00000007878	Chd3	87	69.726	Cricetulus_griseus_crigri
ENSPLAG00000002887	chd3	94	90.952	ENSCSEG00000004489	chd3	98	87.402	Cynoglossus_semilaevis
ENSPLAG00000002887	chd3	97	88.055	ENSCVAG00000007293	chd3	99	87.917	Cyprinodon_variegatus
ENSPLAG00000002887	chd3	96	79.486	ENSDARG00000021405	chd3	95	80.100	Danio_rerio
ENSPLAG00000002887	chd3	88	84.229	ENSDNOG00000047846	CHD3	78	83.612	Dasypus_novemcinctus
ENSPLAG00000002887	chd3	96	83.133	ENSDORG00000010713	Chd3	88	83.133	Dipodomys_ordii
ENSPLAG00000002887	chd3	95	81.124	ENSETEG00000017733	CHD3	87	81.526	Echinops_telfairi
ENSPLAG00000002887	chd3	70	86.730	ENSEBUG00000008310	chd3	86	78.226	Eptatretus_burgeri
ENSPLAG00000002887	chd3	92	72.788	ENSEASG00005019360	CHD3	89	83.806	Equus_asinus_asinus
ENSPLAG00000002887	chd3	92	72.788	ENSECAG00000010051	CHD3	89	83.806	Equus_caballus
ENSPLAG00000002887	chd3	87	89.796	ENSEEUG00000015205	CHD3	78	89.796	Erinaceus_europaeus
ENSPLAG00000002887	chd3	82	97.279	ENSELUG00000019499	chd3	99	97.279	Esox_lucius
ENSPLAG00000002887	chd3	96	82.591	ENSFCAG00000009629	CHD3	84	82.591	Felis_catus
ENSPLAG00000002887	chd3	91	83.401	ENSFDAG00000008220	CHD3	84	83.401	Fukomys_damarensis
ENSPLAG00000002887	chd3	93	92.609	ENSGMOG00000013599	chd3	86	92.609	Gadus_morhua
ENSPLAG00000002887	chd3	74	94.887	ENSGAFG00000004055	chd3	99	92.383	Gambusia_affinis
ENSPLAG00000002887	chd3	93	93.061	ENSGACG00000019275	chd3	88	93.145	Gasterosteus_aculeatus
ENSPLAG00000002887	chd3	80	78.223	ENSGAGG00000013164	CHD3	99	72.876	Gopherus_agassizii
ENSPLAG00000002887	chd3	96	83.534	ENSGGOG00000013496	CHD3	89	83.534	Gorilla_gorilla
ENSPLAG00000002887	chd3	96	83.401	ENSHGLG00000012017	CHD3	87	83.401	Heterocephalus_glaber_female
ENSPLAG00000002887	chd3	84	78.102	ENSHGLG00100013902	CHD3	86	76.190	Heterocephalus_glaber_male
ENSPLAG00000002887	chd3	97	91.235	ENSHCOG00000010170	chd3	89	91.235	Hippocampus_comes
ENSPLAG00000002887	chd3	89	79.794	ENSIPUG00000003271	chd3	93	79.892	Ictalurus_punctatus
ENSPLAG00000002887	chd3	98	72.328	ENSSTOG00000025907	CHD3	87	83.065	Ictidomys_tridecemlineatus
ENSPLAG00000002887	chd3	96	83.401	ENSJJAG00000017633	Chd3	87	83.401	Jaculus_jaculus
ENSPLAG00000002887	chd3	99	86.175	ENSKMAG00000019292	chd3	99	86.175	Kryptolebias_marmoratus
ENSPLAG00000002887	chd3	92	92.056	ENSLBEG00000028485	chd3	92	84.590	Labrus_bergylta
ENSPLAG00000002887	chd3	94	82.353	ENSLACG00000008031	CHD3	94	69.263	Latimeria_chalumnae
ENSPLAG00000002887	chd3	94	89.919	ENSLOCG00000013965	chd3	84	89.919	Lepisosteus_oculatus
ENSPLAG00000002887	chd3	96	83.673	ENSLAFG00000000572	CHD3	91	83.673	Loxodonta_africana
ENSPLAG00000002887	chd3	96	83.534	ENSMFAG00000020113	CHD3	89	83.534	Macaca_fascicularis
ENSPLAG00000002887	chd3	96	83.600	ENSMMUG00000022221	CHD3	87	83.600	Macaca_mulatta
ENSPLAG00000002887	chd3	96	83.133	ENSMNEG00000001728	CHD3	89	83.133	Macaca_nemestrina
ENSPLAG00000002887	chd3	96	83.534	ENSMLEG00000032249	CHD3	86	83.534	Mandrillus_leucophaeus
ENSPLAG00000002887	chd3	84	88.611	ENSMAMG00000000564	chd3	99	84.689	Mastacembelus_armatus
ENSPLAG00000002887	chd3	98	72.004	ENSMAUG00000013873	Chd3	87	83.401	Mesocricetus_auratus
ENSPLAG00000002887	chd3	96	83.065	ENSMICG00000008741	CHD3	86	83.065	Microcebus_murinus
ENSPLAG00000002887	chd3	98	71.844	ENSMOCG00000004848	Chd3	88	83.401	Microtus_ochrogaster
ENSPLAG00000002887	chd3	93	96.537	ENSMMOG00000012699	chd3	93	95.122	Mola_mola
ENSPLAG00000002887	chd3	92	74.074	ENSMODG00000007509	CHD3	96	73.687	Monodelphis_domestica
ENSPLAG00000002887	chd3	94	79.909	MGP_CAROLIEiJ_G0016564	Chd3	96	71.829	Mus_caroli
ENSPLAG00000002887	chd3	94	79.796	ENSMUSG00000018474	Chd3	83	87.391	Mus_musculus
ENSPLAG00000002887	chd3	98	72.169	MGP_PahariEiJ_G0017695	Chd3	83	87.391	Mus_pahari
ENSPLAG00000002887	chd3	94	79.909	MGP_SPRETEiJ_G0017400	Chd3	83	87.391	Mus_spretus
ENSPLAG00000002887	chd3	86	72.619	ENSMPUG00000008861	CHD3	84	83.065	Mustela_putorius_furo
ENSPLAG00000002887	chd3	98	70.640	ENSMLUG00000014643	-	86	82.400	Myotis_lucifugus
ENSPLAG00000002887	chd3	96	83.401	ENSNGAG00000000773	Chd3	86	83.401	Nannospalax_galili
ENSPLAG00000002887	chd3	90	82.857	ENSNBRG00000000636	chd3	98	82.910	Neolamprologus_brichardi
ENSPLAG00000002887	chd3	93	89.756	ENSNLEG00000009770	CHD3	88	89.756	Nomascus_leucogenys
ENSPLAG00000002887	chd3	84	86.957	ENSMEUG00000005852	CHD3	80	86.957	Notamacropus_eugenii
ENSPLAG00000002887	chd3	92	80.460	ENSOPRG00000011069	CHD3	90	83.534	Ochotona_princeps
ENSPLAG00000002887	chd3	96	82.996	ENSODEG00000017785	CHD3	87	82.996	Octodon_degus
ENSPLAG00000002887	chd3	94	97.131	ENSONIG00000009292	chd3	90	97.154	Oreochromis_niloticus
ENSPLAG00000002887	chd3	96	72.727	ENSOCUG00000029299	CHD3	88	72.018	Oryctolagus_cuniculus
ENSPLAG00000002887	chd3	91	84.422	ENSORLG00000007107	chd3	93	86.869	Oryzias_latipes
ENSPLAG00000002887	chd3	95	87.934	ENSORLG00020008387	chd3	95	90.823	Oryzias_latipes_hni
ENSPLAG00000002887	chd3	81	96.203	ENSOMEG00000013691	chd3	99	83.244	Oryzias_melastigma
ENSPLAG00000002887	chd3	96	83.806	ENSOGAG00000003216	CHD3	87	83.806	Otolemur_garnettii
ENSPLAG00000002887	chd3	96	79.600	ENSOARG00000017855	CHD3	86	79.600	Ovis_aries
ENSPLAG00000002887	chd3	96	82.869	ENSPPAG00000032886	CHD3	89	82.869	Pan_paniscus
ENSPLAG00000002887	chd3	96	82.996	ENSPPRG00000000626	CHD3	86	82.996	Panthera_pardus
ENSPLAG00000002887	chd3	96	83.534	ENSPTRG00000008714	CHD3	89	83.534	Pan_troglodytes
ENSPLAG00000002887	chd3	96	83.534	ENSPANG00000023938	CHD3	89	83.534	Papio_anubis
ENSPLAG00000002887	chd3	95	93.827	ENSPKIG00000006305	chd3	90	91.463	Paramormyrops_kingsleyae
ENSPLAG00000002887	chd3	74	79.909	ENSPSIG00000010177	CHD3	97	76.874	Pelodiscus_sinensis
ENSPLAG00000002887	chd3	96	83.401	ENSPEMG00000014262	Chd3	87	83.401	Peromyscus_maniculatus_bairdii
ENSPLAG00000002887	chd3	92	81.541	ENSPCIG00000005442	CHD3	91	81.569	Phascolarctos_cinereus
ENSPLAG00000002887	chd3	96	100.000	ENSPFOG00000012464	chd3	83	100.000	Poecilia_formosa
ENSPLAG00000002887	chd3	99	95.560	ENSPMEG00000016725	chd3	99	95.560	Poecilia_mexicana
ENSPLAG00000002887	chd3	98	88.797	ENSPREG00000011044	chd3	95	88.797	Poecilia_reticulata
ENSPLAG00000002887	chd3	94	83.133	ENSPPYG00000007940	CHD3	87	83.133	Pongo_abelii
ENSPLAG00000002887	chd3	88	84.670	ENSPCAG00000004350	CHD3	84	83.401	Procavia_capensis
ENSPLAG00000002887	chd3	96	83.871	ENSPCOG00000020952	CHD3	86	83.871	Propithecus_coquereli
ENSPLAG00000002887	chd3	78	83.401	ENSPVAG00000016344	CHD3	72	83.401	Pteropus_vampyrus
ENSPLAG00000002887	chd3	95	92.800	ENSPNAG00000020393	chd3	96	82.038	Pygocentrus_nattereri
ENSPLAG00000002887	chd3	92	71.823	ENSRNOG00000009722	Chd3	88	87.391	Rattus_norvegicus
ENSPLAG00000002887	chd3	96	83.534	ENSRBIG00000033562	CHD3	89	83.534	Rhinopithecus_bieti
ENSPLAG00000002887	chd3	96	83.534	ENSRROG00000029554	CHD3	89	83.534	Rhinopithecus_roxellana
ENSPLAG00000002887	chd3	96	83.534	ENSSBOG00000020719	CHD3	89	83.534	Saimiri_boliviensis_boliviensis
ENSPLAG00000002887	chd3	98	72.399	ENSSHAG00000014412	CHD3	94	72.835	Sarcophilus_harrisii
ENSPLAG00000002887	chd3	88	80.015	ENSSFOG00015023123	chd3	88	95.259	Scleropages_formosus
ENSPLAG00000002887	chd3	87	95.968	ENSSMAG00000006451	chd3	89	95.968	Scophthalmus_maximus
ENSPLAG00000002887	chd3	89	91.448	ENSSDUG00000005792	chd3	96	91.448	Seriola_dumerili
ENSPLAG00000002887	chd3	97	94.779	ENSSPAG00000013694	chd3	99	84.550	Stegastes_partitus
ENSPLAG00000002887	chd3	96	83.065	ENSSSCG00000021363	CHD3	92	81.152	Sus_scrofa
ENSPLAG00000002887	chd3	92	86.380	ENSTRUG00000014990	chd3	88	88.459	Takifugu_rubripes
ENSPLAG00000002887	chd3	96	81.808	ENSTNIG00000012998	chd3	93	82.027	Tetraodon_nigroviridis
ENSPLAG00000002887	chd3	63	79.130	ENSTBEG00000011454	-	64	79.130	Tupaia_belangeri
ENSPLAG00000002887	chd3	90	80.691	ENSTTRG00000010295	CHD3	82	82.996	Tursiops_truncatus
ENSPLAG00000002887	chd3	89	83.401	ENSUAMG00000005475	CHD3	89	83.401	Ursus_americanus
ENSPLAG00000002887	chd3	59	87.307	ENSVPAG00000010794	-	56	92.593	Vicugna_pacos
ENSPLAG00000002887	chd3	98	72.559	ENSVVUG00000028011	CHD3	88	83.401	Vulpes_vulpes
ENSPLAG00000002887	chd3	94	84.980	ENSXETG00000012991	chd3	82	84.980	Xenopus_tropicalis
ENSPLAG00000002887	chd3	95	93.785	ENSXCOG00000000809	chd3	95	93.785	Xiphophorus_couchianus
ENSPLAG00000002887	chd3	88	86.980	ENSXMAG00000016035	chd3	99	86.980	Xiphophorus_maculatus