EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSPLAG00000003128 (Gene tree)
Gene ID: 106948533
Gene Symbol: chd6
Alias: -
Full Name: chromodomain-helicase-DNA-binding protein 6-like
Gene Type: protein_coding
Species: Poecilia_latipinna
Status: putative
Strand: Minus strand
Length: 54269 bases
Position: chrKQ545608.1:223134-277402
Accession: 106948533
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPLAP00000001963	ResIII	PF04851.15	2.4e-07	1	1
ENSPLAP00000001963	BRK	PF07533.16	1.7e-17	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPLAT00000013866	-	10163	XM_015034266	ENSPLAP00000001963	3380 (aa)	XP_014889752	UPI00072DA62A

Gene Model

Click here to download ENSPLAG00000003128's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPLAG00000003128's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSPLAG00000003128	chd6	53	63.733	ENSPLAG00000023322	chd7	58	59.511
ENSPLAG00000003128	chd6	57	63.910	ENSPLAG00000011118	chd9	69	66.557

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPLAG00000003128	chd6	68	72.826	ENSG00000124177	CHD6	99	80.309	Homo_sapiens
ENSPLAG00000003128	chd6	99	78.443	ENSAPOG00000013736	chd6	99	78.067	Acanthochromis_polyacanthus
ENSPLAG00000003128	chd6	65	71.212	ENSAMEG00000009496	CHD6	78	71.713	Ailuropoda_melanoleuca
ENSPLAG00000003128	chd6	99	75.791	ENSATEG00000005608	chd6	97	76.804	Anabas_testudineus
ENSPLAG00000003128	chd6	69	74.410	ENSAPLG00000015592	CHD6	72	82.860	Anas_platyrhynchos
ENSPLAG00000003128	chd6	63	70.802	ENSACAG00000006842	CHD6	72	69.291	Anolis_carolinensis
ENSPLAG00000003128	chd6	68	72.524	ENSANAG00000037548	CHD6	99	81.319	Aotus_nancymaae
ENSPLAG00000003128	chd6	81	70.302	ENSAMXG00000009576	chd6	89	66.503	Astyanax_mexicanus
ENSPLAG00000003128	chd6	79	63.929	ENSBTAG00000005733	CHD6	74	71.766	Bos_taurus
ENSPLAG00000003128	chd6	68	72.524	ENSCJAG00000017920	CHD6	99	81.319	Callithrix_jacchus
ENSPLAG00000003128	chd6	65	71.875	ENSCAFG00000009236	CHD6	74	70.663	Canis_familiaris
ENSPLAG00000003128	chd6	65	71.875	ENSCAFG00020012906	CHD6	95	83.815	Canis_lupus_dingo
ENSPLAG00000003128	chd6	62	74.467	ENSCHIG00000017606	CHD6	74	71.704	Capra_hircus
ENSPLAG00000003128	chd6	60	74.415	ENSTSYG00000014635	CHD6	74	75.801	Carlito_syrichta
ENSPLAG00000003128	chd6	68	72.791	ENSCPOG00000015641	CHD6	77	71.206	Cavia_porcellus
ENSPLAG00000003128	chd6	70	73.114	ENSCCAG00000036828	CHD6	99	81.319	Cebus_capucinus
ENSPLAG00000003128	chd6	71	72.914	ENSCATG00000039248	CHD6	99	81.319	Cercocebus_atys
ENSPLAG00000003128	chd6	70	70.838	ENSCLAG00000013743	CHD6	77	71.322	Chinchilla_lanigera
ENSPLAG00000003128	chd6	68	72.919	ENSCSAG00000013997	CHD6	79	70.366	Chlorocebus_sabaeus
ENSPLAG00000003128	chd6	51	73.109	ENSCHOG00000012647	CHD6	68	72.131	Choloepus_hoffmanni
ENSPLAG00000003128	chd6	68	75.672	ENSCPBG00000019382	CHD6	76	73.858	Chrysemys_picta_bellii
ENSPLAG00000003128	chd6	71	73.025	ENSCANG00000043435	CHD6	99	81.319	Colobus_angolensis_palliatus
ENSPLAG00000003128	chd6	69	73.524	ENSCGRG00001002694	Chd6	72	74.536	Cricetulus_griseus_chok1gshd
ENSPLAG00000003128	chd6	88	70.258	ENSDARG00000017244	chd6	89	70.000	Danio_rerio
ENSPLAG00000003128	chd6	67	73.899	ENSDNOG00000004176	CHD6	79	70.108	Dasypus_novemcinctus
ENSPLAG00000003128	chd6	64	81.245	ENSEASG00005023433	CHD6	95	85.356	Equus_asinus_asinus
ENSPLAG00000003128	chd6	72	66.295	ENSECAG00000011761	CHD6	76	70.542	Equus_caballus
ENSPLAG00000003128	chd6	64	89.495	ENSELUG00000012309	chd6	93	89.495	Esox_lucius
ENSPLAG00000003128	chd6	66	73.438	ENSFCAG00000003572	CHD6	79	69.808	Felis_catus
ENSPLAG00000003128	chd6	68	74.121	ENSFALG00000012563	CHD6	67	74.603	Ficedula_albicollis
ENSPLAG00000003128	chd6	70	72.803	ENSFDAG00000013791	CHD6	78	70.158	Fukomys_damarensis
ENSPLAG00000003128	chd6	64	82.212	ENSGMOG00000011715	chd6	88	82.126	Gadus_morhua
ENSPLAG00000003128	chd6	78	82.137	ENSGACG00000000037	chd6	98	78.654	Gasterosteus_aculeatus
ENSPLAG00000003128	chd6	68	72.867	ENSGGOG00000013123	CHD6	99	81.319	Gorilla_gorilla
ENSPLAG00000003128	chd6	99	77.634	ENSHBUG00000014701	chd6	97	77.433	Haplochromis_burtoni
ENSPLAG00000003128	chd6	70	70.610	ENSHGLG00000004548	CHD6	78	70.140	Heterocephalus_glaber_female
ENSPLAG00000003128	chd6	70	70.610	ENSHGLG00100006401	CHD6	78	70.140	Heterocephalus_glaber_male
ENSPLAG00000003128	chd6	77	79.093	ENSIPUG00000003692	chd6	83	79.093	Ictalurus_punctatus
ENSPLAG00000003128	chd6	68	73.089	ENSSTOG00000013382	CHD6	72	71.598	Ictidomys_tridecemlineatus
ENSPLAG00000003128	chd6	63	74.950	ENSLACG00000010881	CHD6	73	74.655	Latimeria_chalumnae
ENSPLAG00000003128	chd6	65	77.693	ENSLOCG00000007386	chd6	81	75.150	Lepisosteus_oculatus
ENSPLAG00000003128	chd6	67	73.124	ENSLAFG00000012144	CHD6	79	70.635	Loxodonta_africana
ENSPLAG00000003128	chd6	71	72.919	ENSMFAG00000032830	CHD6	99	81.319	Macaca_fascicularis
ENSPLAG00000003128	chd6	71	72.919	ENSMMUG00000020458	CHD6	99	81.319	Macaca_mulatta
ENSPLAG00000003128	chd6	71	72.919	ENSMNEG00000040847	CHD6	99	81.319	Macaca_nemestrina
ENSPLAG00000003128	chd6	71	72.919	ENSMLEG00000031965	CHD6	99	81.319	Mandrillus_leucophaeus
ENSPLAG00000003128	chd6	99	76.576	ENSMAMG00000013111	chd6	97	77.018	Mastacembelus_armatus
ENSPLAG00000003128	chd6	68	73.111	ENSMGAG00000001121	CHD6	75	72.530	Meleagris_gallopavo
ENSPLAG00000003128	chd6	71	72.983	ENSMICG00000016641	CHD6	99	81.136	Microcebus_murinus
ENSPLAG00000003128	chd6	64	75.444	ENSMODG00000000720	-	75	75.088	Monodelphis_domestica
ENSPLAG00000003128	chd6	63	73.394	MGP_CAROLIEiJ_G0024604	Chd6	92	78.351	Mus_caroli
ENSPLAG00000003128	chd6	67	73.459	ENSMUSG00000057133	Chd6	92	78.442	Mus_musculus
ENSPLAG00000003128	chd6	72	68.816	MGP_PahariEiJ_G0026048	Chd6	92	78.383	Mus_pahari
ENSPLAG00000003128	chd6	63	73.459	MGP_SPRETEiJ_G0025526	Chd6	92	78.442	Mus_spretus
ENSPLAG00000003128	chd6	71	69.547	ENSMPUG00000017695	CHD6	78	70.574	Mustela_putorius_furo
ENSPLAG00000003128	chd6	66	70.538	ENSMLUG00000016247	CHD6	75	71.429	Myotis_lucifugus
ENSPLAG00000003128	chd6	86	83.713	ENSNBRG00000013839	chd6	97	83.428	Neolamprologus_brichardi
ENSPLAG00000003128	chd6	68	71.676	ENSNLEG00000006496	CHD6	79	72.373	Nomascus_leucogenys
ENSPLAG00000003128	chd6	67	67.585	ENSOPRG00000013376	-	75	69.552	Ochotona_princeps
ENSPLAG00000003128	chd6	81	89.345	ENSONIG00000000393	chd6	96	83.750	Oreochromis_niloticus
ENSPLAG00000003128	chd6	60	72.675	ENSOANG00000014347	CHD6	65	69.745	Ornithorhynchus_anatinus
ENSPLAG00000003128	chd6	67	73.286	ENSOCUG00000012394	CHD6	71	70.183	Oryctolagus_cuniculus
ENSPLAG00000003128	chd6	99	72.334	ENSORLG00020021891	chd6	95	94.600	Oryzias_latipes_hni
ENSPLAG00000003128	chd6	65	73.770	ENSOGAG00000002427	CHD6	76	70.287	Otolemur_garnettii
ENSPLAG00000003128	chd6	68	70.933	ENSOARG00000002597	CHD6	72	76.434	Ovis_aries
ENSPLAG00000003128	chd6	69	70.400	ENSPPRG00000014756	CHD6	76	69.868	Panthera_pardus
ENSPLAG00000003128	chd6	66	73.438	ENSPTIG00000011094	CHD6	76	70.116	Panthera_tigris_altaica
ENSPLAG00000003128	chd6	68	72.826	ENSPTRG00000013504	CHD6	99	81.319	Pan_troglodytes
ENSPLAG00000003128	chd6	70	72.919	ENSPANG00000025554	CHD6	99	81.319	Papio_anubis
ENSPLAG00000003128	chd6	76	73.751	ENSPKIG00000005578	chd6	82	75.543	Paramormyrops_kingsleyae
ENSPLAG00000003128	chd6	79	80.272	ENSPMGG00000014877	chd6	96	89.338	Periophthalmus_magnuspinnatus
ENSPLAG00000003128	chd6	68	73.252	ENSPCIG00000028037	CHD6	78	70.549	Phascolarctos_cinereus
ENSPLAG00000003128	chd6	100	97.585	ENSPREG00000022653	chd6	100	97.585	Poecilia_reticulata
ENSPLAG00000003128	chd6	68	72.983	ENSPPYG00000011016	CHD6	78	70.402	Pongo_abelii
ENSPLAG00000003128	chd6	68	73.089	ENSPCOG00000001089	CHD6	99	81.319	Propithecus_coquereli
ENSPLAG00000003128	chd6	87	80.896	ENSPNYG00000022516	chd6	97	80.515	Pundamilia_nyererei
ENSPLAG00000003128	chd6	80	71.772	ENSPNAG00000012825	chd6	89	68.086	Pygocentrus_nattereri
ENSPLAG00000003128	chd6	68	72.414	ENSRNOG00000016744	Chd6	75	72.414	Rattus_norvegicus
ENSPLAG00000003128	chd6	68	73.025	ENSSBOG00000022089	CHD6	99	81.319	Saimiri_boliviensis_boliviensis
ENSPLAG00000003128	chd6	68	72.873	ENSSHAG00000017072	CHD6	78	69.479	Sarcophilus_harrisii
ENSPLAG00000003128	chd6	78	86.207	ENSSFOG00015012920	chd6	88	86.207	Scleropages_formosus
ENSPLAG00000003128	chd6	64	73.205	ENSSSCG00000007360	CHD6	76	70.237	Sus_scrofa
ENSPLAG00000003128	chd6	68	74.407	ENSTGUG00000003179	CHD6	76	73.755	Taeniopygia_guttata
ENSPLAG00000003128	chd6	77	82.025	ENSTNIG00000017487	chd6	98	82.393	Tetraodon_nigroviridis
ENSPLAG00000003128	chd6	60	79.382	ENSTTRG00000013438	CHD6	68	76.549	Tursiops_truncatus
ENSPLAG00000003128	chd6	62	78.186	ENSUAMG00000024036	CHD6	95	83.815	Ursus_americanus
ENSPLAG00000003128	chd6	65	71.875	ENSUMAG00000002017	CHD6	95	83.815	Ursus_maritimus
ENSPLAG00000003128	chd6	58	68.417	ENSVPAG00000007941	CHD6	69	64.050	Vicugna_pacos
ENSPLAG00000003128	chd6	65	71.875	ENSVVUG00000029164	CHD6	74	70.663	Vulpes_vulpes
ENSPLAG00000003128	chd6	69	66.303	ENSXETG00000021445	chd6	75	64.677	Xenopus_tropicalis