EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSPLAG00000003327 (Gene tree)
Gene ID: 106955180
Gene Symbol: zgc:171482
Alias: -
Full Name: zinc finger matrin-type protein 4-like
Gene Type: protein_coding
Species: Poecilia_latipinna
Status: putative
Strand: Plus strand
Length: 26165 bases
Position: chrKQ546028.1:12725-38889
Accession: 106955180
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPLAP00000020438	zf-met	PF12874.7	1.8e-27	1	4
ENSPLAP00000020438	zf-met	PF12874.7	1.8e-27	2	4
ENSPLAP00000020438	zf-met	PF12874.7	1.8e-27	3	4
ENSPLAP00000020438	zf-met	PF12874.7	1.8e-27	4	4
ENSPLAP00000020438	zf-C2H2_jaz	PF12171.8	8.2e-21	1	2
ENSPLAP00000020438	zf-C2H2_jaz	PF12171.8	8.2e-21	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPLAT00000013579	-	654	XM_015045195	ENSPLAP00000020438	217 (aa)	XP_014900681	-

Gene Model

Click here to download ENSPLAG00000003327's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPLAG00000003327's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSPLAG00000003327	zgc:171482	100	63.556	ENSPLAG00000019268	zmat4a	98	55.066
ENSPLAG00000003327	zgc:171482	96	46.083	ENSPLAG00000022457	znf346	65	46.083

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPLAG00000003327	zgc:171482	100	94.470	ENSAPOG00000019970	zgc:171482	100	94.470	Acanthochromis_polyacanthus
ENSPLAG00000003327	zgc:171482	79	97.500	ENSACIG00000021512	zgc:171482	90	97.500	Amphilophus_citrinellus
ENSPLAG00000003327	zgc:171482	79	97.581	ENSAOCG00000000751	zgc:171482	91	97.581	Amphiprion_ocellaris
ENSPLAG00000003327	zgc:171482	79	95.312	ENSAPEG00000014154	zgc:171482	92	95.312	Amphiprion_percula
ENSPLAG00000003327	zgc:171482	100	88.393	ENSATEG00000001371	zgc:171482	100	88.393	Anabas_testudineus
ENSPLAG00000003327	zgc:171482	79	93.750	ENSACLG00000010511	zgc:171482	89	93.750	Astatotilapia_calliptera
ENSPLAG00000003327	zgc:171482	100	86.425	ENSAMXG00000002299	zgc:171482	100	85.778	Astyanax_mexicanus
ENSPLAG00000003327	zgc:171482	100	74.847	ENSCSEG00000006509	zgc:171482	99	74.847	Cynoglossus_semilaevis
ENSPLAG00000003327	zgc:171482	100	91.630	ENSCVAG00000013606	zgc:171482	100	91.630	Cyprinodon_variegatus
ENSPLAG00000003327	zgc:171482	99	84.211	ENSDARG00000074415	zgc:171482	97	84.211	Danio_rerio
ENSPLAG00000003327	zgc:171482	79	92.623	ENSELUG00000021817	zgc:171482	91	90.551	Esox_lucius
ENSPLAG00000003327	zgc:171482	80	69.143	ENSELUG00000017517	-	60	84.444	Esox_lucius
ENSPLAG00000003327	zgc:171482	100	87.665	ENSFHEG00000002233	zgc:171482	100	87.665	Fundulus_heteroclitus
ENSPLAG00000003327	zgc:171482	100	90.991	ENSGMOG00000010508	zgc:171482	100	90.991	Gadus_morhua
ENSPLAG00000003327	zgc:171482	100	99.167	ENSGAFG00000009398	zgc:171482	99	78.528	Gambusia_affinis
ENSPLAG00000003327	zgc:171482	100	90.086	ENSGACG00000007680	zgc:171482	100	90.086	Gasterosteus_aculeatus
ENSPLAG00000003327	zgc:171482	79	93.750	ENSHBUG00000023289	zgc:171482	96	93.750	Haplochromis_burtoni
ENSPLAG00000003327	zgc:171482	79	89.231	ENSHCOG00000018086	zgc:171482	97	89.231	Hippocampus_comes
ENSPLAG00000003327	zgc:171482	79	94.828	ENSIPUG00000000361	zgc:171482	84	94.828	Ictalurus_punctatus
ENSPLAG00000003327	zgc:171482	100	91.743	ENSKMAG00000005077	zgc:171482	86	91.743	Kryptolebias_marmoratus
ENSPLAG00000003327	zgc:171482	79	96.800	ENSLBEG00000023823	zgc:171482	89	96.800	Labrus_bergylta
ENSPLAG00000003327	zgc:171482	100	82.379	ENSLOCG00000008863	zgc:171482	97	82.533	Lepisosteus_oculatus
ENSPLAG00000003327	zgc:171482	99	96.800	ENSMAMG00000001031	zgc:171482	80	95.276	Mastacembelus_armatus
ENSPLAG00000003327	zgc:171482	100	88.106	ENSMZEG00005027721	zgc:171482	100	88.106	Maylandia_zebra
ENSPLAG00000003327	zgc:171482	86	96.094	ENSMMOG00000010523	zgc:171482	98	96.094	Mola_mola
ENSPLAG00000003327	zgc:171482	100	89.520	ENSMALG00000017883	zgc:171482	100	90.393	Monopterus_albus
ENSPLAG00000003327	zgc:171482	79	95.041	ENSNBRG00000021035	zgc:171482	90	95.041	Neolamprologus_brichardi
ENSPLAG00000003327	zgc:171482	99	92.478	ENSONIG00000018365	zgc:171482	98	92.478	Oreochromis_niloticus
ENSPLAG00000003327	zgc:171482	100	90.749	ENSORLG00000007607	zgc:171482	100	90.749	Oryzias_latipes
ENSPLAG00000003327	zgc:171482	100	87.773	ENSORLG00020003563	zgc:171482	100	87.773	Oryzias_latipes_hni
ENSPLAG00000003327	zgc:171482	100	90.749	ENSORLG00015008552	zgc:171482	100	90.749	Oryzias_latipes_hsok
ENSPLAG00000003327	zgc:171482	79	96.063	ENSOMEG00000003526	zgc:171482	89	96.063	Oryzias_melastigma
ENSPLAG00000003327	zgc:171482	86	95.690	ENSPKIG00000015911	-	81	95.690	Paramormyrops_kingsleyae
ENSPLAG00000003327	zgc:171482	79	90.909	ENSPKIG00000016244	zgc:171482	82	88.696	Paramormyrops_kingsleyae
ENSPLAG00000003327	zgc:171482	99	84.711	ENSPMGG00000020230	zgc:171482	100	84.711	Periophthalmus_magnuspinnatus
ENSPLAG00000003327	zgc:171482	99	90.377	ENSPFOG00000001974	zgc:171482	96	90.377	Poecilia_formosa
ENSPLAG00000003327	zgc:171482	99	99.213	ENSPMEG00000004988	zgc:171482	100	94.495	Poecilia_mexicana
ENSPLAG00000003327	zgc:171482	85	100.000	ENSPREG00000019241	zgc:171482	91	100.000	Poecilia_reticulata
ENSPLAG00000003327	zgc:171482	79	93.750	ENSPNYG00000007773	zgc:171482	89	93.750	Pundamilia_nyererei
ENSPLAG00000003327	zgc:171482	99	83.043	ENSPNAG00000007619	zgc:171482	97	83.117	Pygocentrus_nattereri
ENSPLAG00000003327	zgc:171482	87	90.517	ENSSFOG00015021238	zgc:171482	78	90.517	Scleropages_formosus
ENSPLAG00000003327	zgc:171482	79	88.793	ENSSFOG00015016149	zgc:171482	93	88.793	Scleropages_formosus
ENSPLAG00000003327	zgc:171482	79	95.312	ENSSMAG00000002715	zgc:171482	82	95.312	Scophthalmus_maximus
ENSPLAG00000003327	zgc:171482	79	97.638	ENSSDUG00000008773	zgc:171482	89	97.638	Seriola_dumerili
ENSPLAG00000003327	zgc:171482	79	97.638	ENSSLDG00000019510	zgc:171482	89	97.638	Seriola_lalandi_dorsalis
ENSPLAG00000003327	zgc:171482	79	97.581	ENSSPAG00000013724	zgc:171482	98	97.581	Stegastes_partitus
ENSPLAG00000003327	zgc:171482	84	91.339	ENSTRUG00000005705	zgc:171482	75	91.339	Takifugu_rubripes
ENSPLAG00000003327	zgc:171482	100	79.295	ENSTNIG00000008679	zgc:171482	100	79.295	Tetraodon_nigroviridis
ENSPLAG00000003327	zgc:171482	83	62.590	ENSXETG00000013525	zmat4	83	65.116	Xenopus_tropicalis
ENSPLAG00000003327	zgc:171482	100	88.430	ENSXMAG00000002641	zgc:171482	100	70.732	Xiphophorus_maculatus