EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSPLAG00000004074 (Gene tree)
Gene ID: 106955144
Gene Symbol: -
Alias: -
Full Name: poly(rC) binding protein 3
Gene Type: protein_coding
Species: Poecilia_latipinna
Status: putative
Strand: Minus strand
Length: 21734 bases
Position: chrKQ546024.1:294320-316053
Accession: 106955144
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPLAP00000020819	KH_1	PF00013.29	1.4e-50	1	3
ENSPLAP00000020819	KH_1	PF00013.29	1.4e-50	2	3
ENSPLAP00000020819	KH_1	PF00013.29	1.4e-50	3	3
ENSPLAP00000020819	KH_2	PF07650.17	6.5e-12	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPLAT00000012558	-	1047	XM_015045144	ENSPLAP00000020819	348 (aa)	XP_014900630	-

Gene Model

Click here to download ENSPLAG00000004074's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPLAG00000004074's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSPLAG00000004074	-	85	40.845	ENSPLAG00000015391	nova1	53	40.845
ENSPLAG00000004074	-	64	38.095	ENSPLAG00000010763	khsrp	58	38.095
ENSPLAG00000004074	-	85	39.437	ENSPLAG00000003504	-	51	39.437
ENSPLAG00000004074	-	91	75.309	ENSPLAG00000017518	PCBP2	98	75.309
ENSPLAG00000004074	-	80	43.519	ENSPLAG00000011438	-	88	43.519
ENSPLAG00000004074	-	79	52.857	ENSPLAG00000023099	hnrnpk	61	52.857
ENSPLAG00000004074	-	74	76.119	ENSPLAG00000017488	zgc:110045	92	76.119
ENSPLAG00000004074	-	92	82.906	ENSPLAG00000011449	pcbp3	90	82.906
ENSPLAG00000004074	-	79	52.857	ENSPLAG00000004540	hnrpkl	60	52.857
ENSPLAG00000004074	-	67	39.062	ENSPLAG00000016612	fubp3	64	39.062
ENSPLAG00000004074	-	94	33.858	ENSPLAG00000007777	igf2bp3	60	33.858
ENSPLAG00000004074	-	62	35.065	ENSPLAG00000021170	fubp1	54	35.065
ENSPLAG00000004074	-	58	41.270	ENSPLAG00000008443	-	53	41.270
ENSPLAG00000004074	-	91	74.074	ENSPLAG00000003153	pcbp2	98	74.074
ENSPLAG00000004074	-	70	54.511	ENSPLAG00000023316	pcbp4	62	52.857
ENSPLAG00000004074	-	87	35.000	ENSPLAG00000005993	igf2bp2b	59	35.000

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPLAG00000004074	-	91	91.536	ENSAPOG00000020003	pcbp3	87	91.536	Acanthochromis_polyacanthus
ENSPLAG00000004074	-	92	91.892	ENSAPOG00000016582	-	99	91.892	Acanthochromis_polyacanthus
ENSPLAG00000004074	-	91	91.291	ENSAMEG00000001697	-	91	91.291	Ailuropoda_melanoleuca
ENSPLAG00000004074	-	89	85.757	ENSACIG00000010933	pcbp3	98	82.748	Amphilophus_citrinellus
ENSPLAG00000004074	-	92	91.317	ENSACIG00000002739	-	99	91.317	Amphilophus_citrinellus
ENSPLAG00000004074	-	84	96.928	ENSAOCG00000007806	-	100	96.928	Amphiprion_ocellaris
ENSPLAG00000004074	-	89	90.909	ENSAOCG00000008592	-	97	90.909	Amphiprion_ocellaris
ENSPLAG00000004074	-	89	84.548	ENSAPEG00000008011	pcbp3	94	84.548	Amphiprion_percula
ENSPLAG00000004074	-	92	93.293	ENSAPEG00000005209	-	99	93.293	Amphiprion_percula
ENSPLAG00000004074	-	89	86.826	ENSATEG00000015787	-	99	86.826	Anabas_testudineus
ENSPLAG00000004074	-	92	94.154	ENSATEG00000009833	-	99	94.154	Anabas_testudineus
ENSPLAG00000004074	-	89	72.877	ENSAPLG00000008951	-	79	72.877	Anas_platyrhynchos
ENSPLAG00000004074	-	91	91.159	ENSAPLG00000002975	-	98	91.159	Anas_platyrhynchos
ENSPLAG00000004074	-	91	78.797	ENSACAG00000009819	-	98	78.797	Anolis_carolinensis
ENSPLAG00000004074	-	91	84.314	ENSACAG00000004607	-	99	84.314	Anolis_carolinensis
ENSPLAG00000004074	-	87	81.323	ENSANAG00000030702	-	100	91.633	Aotus_nancymaae
ENSPLAG00000004074	-	92	94.410	ENSACLG00000003801	-	99	94.410	Astatotilapia_calliptera
ENSPLAG00000004074	-	89	84.257	ENSACLG00000011835	pcbp3	94	84.257	Astatotilapia_calliptera
ENSPLAG00000004074	-	89	67.164	ENSAMXG00000001760	zgc:110045	72	67.164	Astyanax_mexicanus
ENSPLAG00000004074	-	89	85.714	ENSAMXG00000003440	pcbp3	94	85.714	Astyanax_mexicanus
ENSPLAG00000004074	-	89	91.290	ENSAMXG00000013588	-	99	91.290	Astyanax_mexicanus
ENSPLAG00000004074	-	82	93.534	ENSCAFG00020019472	-	83	93.534	Canis_lupus_dingo
ENSPLAG00000004074	-	96	86.895	ENSCSAG00000007440	-	91	89.521	Chlorocebus_sabaeus
ENSPLAG00000004074	-	91	90.120	ENSCPBG00000012151	-	99	90.120	Chrysemys_picta_bellii
ENSPLAG00000004074	-	89	78.466	ENSCPBG00000000733	-	72	78.466	Chrysemys_picta_bellii
ENSPLAG00000004074	-	89	91.961	ENSCSEG00000000822	pcbp3	98	91.961	Cynoglossus_semilaevis
ENSPLAG00000004074	-	92	81.121	ENSCSEG00000016984	-	99	81.121	Cynoglossus_semilaevis
ENSPLAG00000004074	-	92	92.988	ENSCVAG00000005262	-	99	92.988	Cyprinodon_variegatus
ENSPLAG00000004074	-	89	84.795	ENSCVAG00000014482	pcbp3	94	84.795	Cyprinodon_variegatus
ENSPLAG00000004074	-	92	86.402	ENSDARG00000054378	pcbp3	99	86.402	Danio_rerio
ENSPLAG00000004074	-	91	79.817	ENSETEG00000015988	-	98	79.817	Echinops_telfairi
ENSPLAG00000004074	-	91	75.988	ENSEBUG00000007485	-	92	78.539	Eptatretus_burgeri
ENSPLAG00000004074	-	83	71.134	ENSEBUG00000016192	pcbp3	99	71.134	Eptatretus_burgeri
ENSPLAG00000004074	-	81	72.000	ENSEBUG00000005495	pcbp3	68	72.000	Eptatretus_burgeri
ENSPLAG00000004074	-	89	88.424	ENSELUG00000003521	pcbp3	94	88.424	Esox_lucius
ENSPLAG00000004074	-	89	91.562	ENSELUG00000001560	-	98	87.464	Esox_lucius
ENSPLAG00000004074	-	89	73.151	ENSFALG00000004411	-	74	73.151	Ficedula_albicollis
ENSPLAG00000004074	-	91	90.798	ENSFALG00000003949	-	98	90.798	Ficedula_albicollis
ENSPLAG00000004074	-	92	93.293	ENSFHEG00000006539	-	99	93.293	Fundulus_heteroclitus
ENSPLAG00000004074	-	90	93.291	ENSFHEG00000016615	pcbp3	95	93.291	Fundulus_heteroclitus
ENSPLAG00000004074	-	89	80.000	ENSGMOG00000011992	pcbp3	96	80.000	Gadus_morhua
ENSPLAG00000004074	-	89	72.121	ENSGMOG00000008611	-	99	72.121	Gadus_morhua
ENSPLAG00000004074	-	91	79.586	ENSGALG00000013155	-	99	79.586	Gallus_gallus
ENSPLAG00000004074	-	91	84.746	ENSGALG00000004394	-	91	95.882	Gallus_gallus
ENSPLAG00000004074	-	91	83.430	ENSGAFG00000011430	pcbp3	96	83.430	Gambusia_affinis
ENSPLAG00000004074	-	89	92.188	ENSGAFG00000010274	-	94	92.188	Gambusia_affinis
ENSPLAG00000004074	-	92	91.420	ENSGACG00000002266	-	99	91.420	Gasterosteus_aculeatus
ENSPLAG00000004074	-	92	78.830	ENSGACG00000014955	-	99	78.830	Gasterosteus_aculeatus
ENSPLAG00000004074	-	80	85.663	ENSGAGG00000000271	-	100	85.663	Gopherus_agassizii
ENSPLAG00000004074	-	69	90.217	ENSGAGG00000006956	-	76	90.217	Gopherus_agassizii
ENSPLAG00000004074	-	92	94.410	ENSHBUG00000021782	-	99	94.410	Haplochromis_burtoni
ENSPLAG00000004074	-	89	90.881	ENSHBUG00000010697	pcbp3	97	90.881	Haplochromis_burtoni
ENSPLAG00000004074	-	89	84.795	ENSHCOG00000017868	pcbp3	94	84.795	Hippocampus_comes
ENSPLAG00000004074	-	92	88.146	ENSHCOG00000006067	-	99	88.146	Hippocampus_comes
ENSPLAG00000004074	-	92	94.099	ENSIPUG00000006238	pcbp3	99	94.099	Ictalurus_punctatus
ENSPLAG00000004074	-	89	84.548	ENSKMAG00000003046	pcbp3	94	84.548	Kryptolebias_marmoratus
ENSPLAG00000004074	-	89	91.250	ENSKMAG00000018530	-	99	86.269	Kryptolebias_marmoratus
ENSPLAG00000004074	-	91	90.683	ENSLBEG00000006201	pcbp3	97	90.683	Labrus_bergylta
ENSPLAG00000004074	-	92	79.518	ENSLBEG00000006542	-	99	79.518	Labrus_bergylta
ENSPLAG00000004074	-	89	72.928	ENSLACG00000010804	zgc:110045	74	72.928	Latimeria_chalumnae
ENSPLAG00000004074	-	89	78.512	ENSLACG00000010386	pcbp3	74	78.512	Latimeria_chalumnae
ENSPLAG00000004074	-	91	89.521	ENSLOCG00000009369	pcbp3	99	89.521	Lepisosteus_oculatus
ENSPLAG00000004074	-	89	77.876	ENSLOCG00000005058	zgc:110045	80	77.876	Lepisosteus_oculatus
ENSPLAG00000004074	-	89	93.548	ENSMAMG00000022336	pcbp3	92	93.548	Mastacembelus_armatus
ENSPLAG00000004074	-	92	92.923	ENSMAMG00000011620	-	99	92.923	Mastacembelus_armatus
ENSPLAG00000004074	-	92	87.870	ENSMZEG00005014882	-	99	87.870	Maylandia_zebra
ENSPLAG00000004074	-	89	84.706	ENSMZEG00005008993	pcbp3	97	84.706	Maylandia_zebra
ENSPLAG00000004074	-	88	78.841	ENSMGAG00000001883	-	95	79.130	Meleagris_gallopavo
ENSPLAG00000004074	-	89	73.151	ENSMGAG00000006794	-	74	73.151	Meleagris_gallopavo
ENSPLAG00000004074	-	92	94.099	ENSMMOG00000005216	-	99	94.099	Mola_mola
ENSPLAG00000004074	-	89	89.062	ENSMMOG00000000730	pcbp3	86	89.062	Mola_mola
ENSPLAG00000004074	-	69	78.505	ENSMODG00000027884	-	93	78.505	Monodelphis_domestica
ENSPLAG00000004074	-	89	86.787	ENSMALG00000000691	pcbp3	94	86.787	Monopterus_albus
ENSPLAG00000004074	-	93	85.546	ENSMPUG00000001779	-	92	85.546	Mustela_putorius_furo
ENSPLAG00000004074	-	92	88.822	ENSNBRG00000016714	-	99	88.822	Neolamprologus_brichardi
ENSPLAG00000004074	-	89	86.527	ENSNBRG00000016409	-	94	86.527	Neolamprologus_brichardi
ENSPLAG00000004074	-	88	84.071	ENSOPRG00000003431	-	99	84.071	Ochotona_princeps
ENSPLAG00000004074	-	92	92.121	ENSONIG00000004611	-	99	92.121	Oreochromis_niloticus
ENSPLAG00000004074	-	89	83.429	ENSONIG00000012122	-	96	83.429	Oreochromis_niloticus
ENSPLAG00000004074	-	91	90.798	ENSOCUG00000002696	-	89	90.798	Oryctolagus_cuniculus
ENSPLAG00000004074	-	92	92.424	ENSORLG00000022739	-	99	92.424	Oryzias_latipes
ENSPLAG00000004074	-	89	90.909	ENSORLG00000000059	pcbp3	99	90.909	Oryzias_latipes
ENSPLAG00000004074	-	92	94.410	ENSORLG00020006124	-	99	94.410	Oryzias_latipes_hni
ENSPLAG00000004074	-	89	90.909	ENSORLG00020012671	pcbp3	96	90.909	Oryzias_latipes_hni
ENSPLAG00000004074	-	91	91.131	ENSORLG00015008051	-	96	91.131	Oryzias_latipes_hsok
ENSPLAG00000004074	-	89	90.909	ENSORLG00015000429	pcbp3	96	90.909	Oryzias_latipes_hsok
ENSPLAG00000004074	-	86	91.333	ENSOMEG00000020811	pcbp3	98	91.333	Oryzias_melastigma
ENSPLAG00000004074	-	92	94.720	ENSOMEG00000020162	-	99	94.720	Oryzias_melastigma
ENSPLAG00000004074	-	91	83.287	ENSOGAG00000008044	-	99	83.287	Otolemur_garnettii
ENSPLAG00000004074	-	92	92.901	ENSPKIG00000019329	pcbp3	99	92.901	Paramormyrops_kingsleyae
ENSPLAG00000004074	-	70	87.912	ENSPKIG00000020913	-	82	87.912	Paramormyrops_kingsleyae
ENSPLAG00000004074	-	91	81.381	ENSPSIG00000014970	-	98	81.982	Pelodiscus_sinensis
ENSPLAG00000004074	-	68	77.519	ENSPSIG00000008350	-	68	77.519	Pelodiscus_sinensis
ENSPLAG00000004074	-	89	84.457	ENSPMGG00000022383	pcbp3	94	84.457	Periophthalmus_magnuspinnatus
ENSPLAG00000004074	-	71	84.574	ENSPMAG00000004637	-	97	84.574	Petromyzon_marinus
ENSPLAG00000004074	-	91	69.725	ENSPMAG00000004551	pcbp3	91	69.725	Petromyzon_marinus
ENSPLAG00000004074	-	91	84.857	ENSPCIG00000028092	-	99	84.857	Phascolarctos_cinereus
ENSPLAG00000004074	-	92	96.096	ENSPMEG00000006653	-	99	96.096	Poecilia_mexicana
ENSPLAG00000004074	-	91	84.412	ENSPMEG00000021239	pcbp3	94	84.012	Poecilia_mexicana
ENSPLAG00000004074	-	89	91.054	ENSPREG00000015736	pcbp3	98	91.054	Poecilia_reticulata
ENSPLAG00000004074	-	92	95.342	ENSPREG00000020585	-	99	95.342	Poecilia_reticulata
ENSPLAG00000004074	-	89	90.596	ENSPNYG00000012326	pcbp3	94	90.596	Pundamilia_nyererei
ENSPLAG00000004074	-	92	94.410	ENSPNYG00000013205	-	99	94.410	Pundamilia_nyererei
ENSPLAG00000004074	-	92	92.121	ENSPNAG00000015104	pcbp3	99	92.121	Pygocentrus_nattereri
ENSPLAG00000004074	-	89	91.262	ENSPNAG00000008541	-	97	91.262	Pygocentrus_nattereri
ENSPLAG00000004074	-	91	90.826	ENSRNOG00000001245	Pcbp3	98	90.826	Rattus_norvegicus
ENSPLAG00000004074	-	96	78.512	ENSRBIG00000028177	-	99	76.087	Rhinopithecus_bieti
ENSPLAG00000004074	-	91	89.790	ENSSHAG00000007890	-	99	89.790	Sarcophilus_harrisii
ENSPLAG00000004074	-	89	84.503	ENSSFOG00015014706	pcbp3	94	84.503	Scleropages_formosus
ENSPLAG00000004074	-	91	80.556	ENSSFOG00015007118	-	95	80.556	Scleropages_formosus
ENSPLAG00000004074	-	89	92.163	ENSSFOG00015010205	pcbp3	94	92.163	Scleropages_formosus
ENSPLAG00000004074	-	92	92.661	ENSSMAG00000003135	-	99	92.661	Scophthalmus_maximus
ENSPLAG00000004074	-	89	93.248	ENSSMAG00000011929	pcbp3	96	93.248	Scophthalmus_maximus
ENSPLAG00000004074	-	89	87.087	ENSSDUG00000011608	pcbp3	98	87.087	Seriola_dumerili
ENSPLAG00000004074	-	89	89.062	ENSSDUG00000008502	-	98	85.623	Seriola_dumerili
ENSPLAG00000004074	-	89	87.087	ENSSLDG00000008518	pcbp3	98	87.087	Seriola_lalandi_dorsalis
ENSPLAG00000004074	-	89	92.500	ENSSLDG00000020161	-	94	92.500	Seriola_lalandi_dorsalis
ENSPLAG00000004074	-	89	74.230	ENSSPUG00000013214	-	88	86.387	Sphenodon_punctatus
ENSPLAG00000004074	-	84	97.270	ENSSPAG00000004190	-	100	97.270	Stegastes_partitus
ENSPLAG00000004074	-	89	74.118	ENSSPAG00000023341	-	94	74.118	Stegastes_partitus
ENSPLAG00000004074	-	91	87.425	ENSTGUG00000003316	-	99	87.425	Taeniopygia_guttata
ENSPLAG00000004074	-	91	84.098	ENSTGUG00000008158	-	99	84.098	Taeniopygia_guttata
ENSPLAG00000004074	-	89	87.651	ENSTRUG00000013604	pcbp3	94	87.651	Takifugu_rubripes
ENSPLAG00000004074	-	92	89.506	ENSTRUG00000006280	-	99	89.506	Takifugu_rubripes
ENSPLAG00000004074	-	91	83.427	ENSTTRG00000015075	-	99	83.427	Tursiops_truncatus
ENSPLAG00000004074	-	84	74.041	ENSXETG00000010491	pcbp2	72	74.041	Xenopus_tropicalis
ENSPLAG00000004074	-	91	87.537	ENSXETG00000011483	pcbp1	99	87.537	Xenopus_tropicalis
ENSPLAG00000004074	-	89	84.012	ENSXCOG00000020481	pcbp3	94	84.012	Xiphophorus_couchianus
ENSPLAG00000004074	-	89	84.548	ENSXMAG00000008175	pcbp3	94	84.548	Xiphophorus_maculatus
ENSPLAG00000004074	-	92	92.308	ENSXMAG00000028711	-	99	92.308	Xiphophorus_maculatus