EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSPLAG00000004111 (Gene tree)
Gene ID: 106943890
Gene Symbol: polr1c (1 of many)
Alias: -
Full Name: RNA polymerase I and III subunit C
Gene Type: protein_coding
Species: Poecilia_latipinna
Status: putative
Strand: Plus strand
Length: 3149 bases
Position: chrLMXD01042845.1:334-3482
Accession: 106943890
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPLAP00000020809	RNA_pol_A_bac	PF01000.26	4.1e-20	1	1
ENSPLAP00000020797	RNA_pol_A_bac	PF01000.26	2.2e-17	1	1
ENSPLAP00000020797	RNA_pol_L	PF01193.24	5.9e-10	1	1
ENSPLAP00000020809	RNA_pol_L	PF01193.24	6.5e-10	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPLAT00000012598	-	723	XM_015027183	ENSPLAP00000020809	240 (aa)	XP_014882669	-
ENSPLAT00000012620	-	570	-	ENSPLAP00000020797	189 (aa)	-	-

Gene Model

Click here to download ENSPLAG00000004111's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPLAG00000004111's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPLAG00000004111	polr1c	99	65.272	ENSG00000171453	POLR1C	82	65.272	Homo_sapiens
ENSPLAG00000004111	polr1c	88	87.264	ENSAPOG00000024356	polr1c	60	87.264	Acanthochromis_polyacanthus
ENSPLAG00000004111	polr1c	99	66.109	ENSAMEG00000012205	POLR1C	69	66.109	Ailuropoda_melanoleuca
ENSPLAG00000004111	polr1c	88	90.566	ENSACIG00000016268	polr1c	65	90.566	Amphilophus_citrinellus
ENSPLAG00000004111	polr1c	88	87.264	ENSAOCG00000011687	polr1c	59	87.264	Amphiprion_ocellaris
ENSPLAG00000004111	polr1c	88	88.208	ENSAPEG00000002433	polr1c	60	88.208	Amphiprion_percula
ENSPLAG00000004111	polr1c	88	91.429	ENSATEG00000005985	polr1c	60	91.429	Anabas_testudineus
ENSPLAG00000004111	polr1c	99	66.946	ENSAPLG00000002908	POLR1C	80	66.946	Anas_platyrhynchos
ENSPLAG00000004111	polr1c	99	65.690	ENSANAG00000025805	POLR1C	68	65.690	Aotus_nancymaae
ENSPLAG00000004111	polr1c	88	90.566	ENSACLG00000006573	polr1c	60	90.566	Astatotilapia_calliptera
ENSPLAG00000004111	polr1c	99	76.151	ENSAMXG00000012062	polr1c	61	82.547	Astyanax_mexicanus
ENSPLAG00000004111	polr1c	99	66.109	ENSBTAG00000018969	POLR1C	69	66.109	Bos_taurus
ENSPLAG00000004111	polr1c	92	47.964	WBGene00019275	rpac-40	56	49.756	Caenorhabditis_elegans
ENSPLAG00000004111	polr1c	99	64.854	ENSCJAG00000005594	POLR1C	69	64.854	Callithrix_jacchus
ENSPLAG00000004111	polr1c	99	65.690	ENSCAFG00000001872	POLR1C	69	65.690	Canis_familiaris
ENSPLAG00000004111	polr1c	99	65.690	ENSCAFG00020012018	POLR1C	69	65.690	Canis_lupus_dingo
ENSPLAG00000004111	polr1c	99	65.833	ENSCHIG00000004352	POLR1C	61	70.755	Capra_hircus
ENSPLAG00000004111	polr1c	99	65.690	ENSTSYG00000011921	POLR1C	69	65.690	Carlito_syrichta
ENSPLAG00000004111	polr1c	99	66.946	ENSCAPG00000015364	POLR1C	70	66.946	Cavia_aperea
ENSPLAG00000004111	polr1c	99	66.946	ENSCPOG00000038098	POLR1C	69	66.946	Cavia_porcellus
ENSPLAG00000004111	polr1c	99	65.272	ENSCCAG00000020169	POLR1C	69	65.272	Cebus_capucinus
ENSPLAG00000004111	polr1c	99	65.272	ENSCATG00000044045	POLR1C	69	65.272	Cercocebus_atys
ENSPLAG00000004111	polr1c	99	67.364	ENSCLAG00000009266	POLR1C	69	67.364	Chinchilla_lanigera
ENSPLAG00000004111	polr1c	99	64.017	ENSCSAG00000011913	POLR1C	69	64.017	Chlorocebus_sabaeus
ENSPLAG00000004111	polr1c	88	68.868	ENSCHOG00000006601	POLR1C	100	68.868	Choloepus_hoffmanni
ENSPLAG00000004111	polr1c	99	68.619	ENSCPBG00000025203	POLR1C	69	68.619	Chrysemys_picta_bellii
ENSPLAG00000004111	polr1c	97	49.145	ENSCING00000003563	-	59	53.398	Ciona_intestinalis
ENSPLAG00000004111	polr1c	99	65.272	ENSCANG00000043167	POLR1C	69	65.272	Colobus_angolensis_palliatus
ENSPLAG00000004111	polr1c	99	65.272	ENSCGRG00001017533	Polr1c	69	65.272	Cricetulus_griseus_chok1gshd
ENSPLAG00000004111	polr1c	99	65.272	ENSCGRG00000013225	Polr1c	80	65.272	Cricetulus_griseus_crigri
ENSPLAG00000004111	polr1c	92	84.545	ENSCSEG00000018097	polr1c	61	85.849	Cynoglossus_semilaevis
ENSPLAG00000004111	polr1c	88	94.340	ENSCVAG00000005684	polr1c	85	94.340	Cyprinodon_variegatus
ENSPLAG00000004111	polr1c	99	75.314	ENSDARG00000039400	polr1c	66	75.314	Danio_rerio
ENSPLAG00000004111	polr1c	99	66.109	ENSDNOG00000042693	POLR1C	69	66.109	Dasypus_novemcinctus
ENSPLAG00000004111	polr1c	99	66.109	ENSDORG00000000429	Polr1c	69	66.109	Dipodomys_ordii
ENSPLAG00000004111	polr1c	90	50.230	FBgn0031657	CG3756	61	51.208	Drosophila_melanogaster
ENSPLAG00000004111	polr1c	99	61.506	ENSETEG00000010807	POLR1C	69	61.506	Echinops_telfairi
ENSPLAG00000004111	polr1c	98	61.277	ENSEBUG00000013725	polr1c	64	65.865	Eptatretus_burgeri
ENSPLAG00000004111	polr1c	99	66.109	ENSEASG00005003338	POLR1C	69	66.109	Equus_asinus_asinus
ENSPLAG00000004111	polr1c	99	66.109	ENSECAG00000023516	POLR1C	68	66.109	Equus_caballus
ENSPLAG00000004111	polr1c	99	66.946	ENSEEUG00000005471	POLR1C	69	66.946	Erinaceus_europaeus
ENSPLAG00000004111	polr1c	99	74.059	ENSELUG00000013027	polr1c	61	80.189	Esox_lucius
ENSPLAG00000004111	polr1c	99	65.690	ENSFCAG00000009735	POLR1C	69	65.690	Felis_catus
ENSPLAG00000004111	polr1c	99	66.946	ENSFALG00000012111	POLR1C	74	66.946	Ficedula_albicollis
ENSPLAG00000004111	polr1c	99	66.527	ENSFDAG00000008428	POLR1C	69	66.527	Fukomys_damarensis
ENSPLAG00000004111	polr1c	99	86.170	ENSFHEG00000000262	polr1c	64	86.170	Fundulus_heteroclitus
ENSPLAG00000004111	polr1c	91	82.727	ENSGMOG00000013878	polr1c	66	83.099	Gadus_morhua
ENSPLAG00000004111	polr1c	99	68.619	ENSGALG00000010349	POLR1C	69	68.619	Gallus_gallus
ENSPLAG00000004111	polr1c	93	97.748	ENSGAFG00000010153	polr1c	63	97.748	Gambusia_affinis
ENSPLAG00000004111	polr1c	88	85.849	ENSGACG00000002453	polr1c	60	85.849	Gasterosteus_aculeatus
ENSPLAG00000004111	polr1c	99	67.364	ENSGAGG00000010640	POLR1C	74	67.364	Gopherus_agassizii
ENSPLAG00000004111	polr1c	99	65.272	ENSGGOG00000010903	POLR1C	69	65.272	Gorilla_gorilla
ENSPLAG00000004111	polr1c	99	84.100	ENSHBUG00000017816	polr1c	73	84.100	Haplochromis_burtoni
ENSPLAG00000004111	polr1c	99	66.109	ENSHGLG00000019441	POLR1C	92	66.109	Heterocephalus_glaber_female
ENSPLAG00000004111	polr1c	99	66.109	ENSHGLG00100005970	POLR1C	92	66.109	Heterocephalus_glaber_male
ENSPLAG00000004111	polr1c	93	82.432	ENSHCOG00000002179	polr1c	61	83.019	Hippocampus_comes
ENSPLAG00000004111	polr1c	99	75.105	ENSIPUG00000024464	polr1c	60	81.429	Ictalurus_punctatus
ENSPLAG00000004111	polr1c	99	65.690	ENSSTOG00000010631	POLR1C	69	65.690	Ictidomys_tridecemlineatus
ENSPLAG00000004111	polr1c	99	66.109	ENSJJAG00000023110	Polr1c	69	66.109	Jaculus_jaculus
ENSPLAG00000004111	polr1c	99	81.383	ENSKMAG00000014305	polr1c	59	90.094	Kryptolebias_marmoratus
ENSPLAG00000004111	polr1c	88	89.151	ENSLBEG00000014925	polr1c	60	89.151	Labrus_bergylta
ENSPLAG00000004111	polr1c	99	57.500	ENSLACG00000012567	POLR1C	70	57.500	Latimeria_chalumnae
ENSPLAG00000004111	polr1c	99	71.130	ENSLOCG00000016710	polr1c	66	71.130	Lepisosteus_oculatus
ENSPLAG00000004111	polr1c	99	66.527	ENSLAFG00000026248	POLR1C	79	66.527	Loxodonta_africana
ENSPLAG00000004111	polr1c	99	64.854	ENSMFAG00000046295	POLR1C	69	64.854	Macaca_fascicularis
ENSPLAG00000004111	polr1c	99	64.854	ENSMMUG00000015192	POLR1C	69	64.854	Macaca_mulatta
ENSPLAG00000004111	polr1c	99	64.854	ENSMNEG00000028073	POLR1C	69	64.854	Macaca_nemestrina
ENSPLAG00000004111	polr1c	99	65.272	ENSMLEG00000034818	POLR1C	69	65.272	Mandrillus_leucophaeus
ENSPLAG00000004111	polr1c	93	89.189	ENSMAMG00000008700	polr1c	60	90.094	Mastacembelus_armatus
ENSPLAG00000004111	polr1c	99	82.011	ENSMZEG00005018545	polr1c	60	90.566	Maylandia_zebra
ENSPLAG00000004111	polr1c	99	67.782	ENSMGAG00000011020	POLR1C	84	67.782	Meleagris_gallopavo
ENSPLAG00000004111	polr1c	99	65.690	ENSMAUG00000014329	Polr1c	69	65.690	Mesocricetus_auratus
ENSPLAG00000004111	polr1c	99	63.598	ENSMICG00000005027	POLR1C	69	63.598	Microcebus_murinus
ENSPLAG00000004111	polr1c	99	66.109	ENSMOCG00000017549	Polr1c	69	66.109	Microtus_ochrogaster
ENSPLAG00000004111	polr1c	99	75.532	ENSMMOG00000005380	polr1c	64	75.532	Mola_mola
ENSPLAG00000004111	polr1c	99	66.946	ENSMODG00000018964	POLR1C	82	66.946	Monodelphis_domestica
ENSPLAG00000004111	polr1c	99	79.365	ENSMALG00000011711	polr1c	55	87.037	Monopterus_albus
ENSPLAG00000004111	polr1c	99	66.109	MGP_CAROLIEiJ_G0021662	Polr1c	92	66.109	Mus_caroli
ENSPLAG00000004111	polr1c	99	66.527	ENSMUSG00000067148	Polr1c	92	66.527	Mus_musculus
ENSPLAG00000004111	polr1c	99	66.527	MGP_PahariEiJ_G0020654	Polr1c	92	66.527	Mus_pahari
ENSPLAG00000004111	polr1c	99	66.527	MGP_SPRETEiJ_G0022574	Polr1c	92	66.527	Mus_spretus
ENSPLAG00000004111	polr1c	99	65.690	ENSMPUG00000012916	POLR1C	63	65.690	Mustela_putorius_furo
ENSPLAG00000004111	polr1c	99	66.109	ENSMLUG00000017751	POLR1C	69	66.109	Myotis_lucifugus
ENSPLAG00000004111	polr1c	99	66.109	ENSNGAG00000023487	Polr1c	82	66.109	Nannospalax_galili
ENSPLAG00000004111	polr1c	99	83.511	ENSNBRG00000018742	polr1c	60	91.038	Neolamprologus_brichardi
ENSPLAG00000004111	polr1c	99	65.272	ENSNLEG00000004035	POLR1C	69	65.272	Nomascus_leucogenys
ENSPLAG00000004111	polr1c	99	50.628	ENSMEUG00000006778	POLR1C	69	50.628	Notamacropus_eugenii
ENSPLAG00000004111	polr1c	67	62.733	ENSOPRG00000000145	POLR1C	60	62.733	Ochotona_princeps
ENSPLAG00000004111	polr1c	91	70.320	ENSODEG00000017109	-	97	71.226	Octodon_degus
ENSPLAG00000004111	polr1c	99	67.364	ENSODEG00000015831	-	69	67.364	Octodon_degus
ENSPLAG00000004111	polr1c	88	91.038	ENSONIG00000013133	polr1c	59	91.038	Oreochromis_niloticus
ENSPLAG00000004111	polr1c	99	64.017	ENSOANG00000003043	POLR1C	69	64.017	Ornithorhynchus_anatinus
ENSPLAG00000004111	polr1c	99	64.017	ENSOCUG00000005504	POLR1C	69	64.017	Oryctolagus_cuniculus
ENSPLAG00000004111	polr1c	91	85.388	ENSORLG00000019743	polr1c	62	84.906	Oryzias_latipes
ENSPLAG00000004111	polr1c	85	76.585	ENSORLG00020005555	polr1c	57	77.436	Oryzias_latipes_hni
ENSPLAG00000004111	polr1c	91	85.845	ENSORLG00020006489	POLR1C	62	87.019	Oryzias_latipes_hni
ENSPLAG00000004111	polr1c	91	84.475	ENSORLG00015013322	polr1c	59	85.577	Oryzias_latipes_hsok
ENSPLAG00000004111	polr1c	91	85.780	ENSOMEG00000016527	polr1c	59	86.957	Oryzias_melastigma
ENSPLAG00000004111	polr1c	99	65.145	ENSOGAG00000016318	POLR1C	61	69.811	Otolemur_garnettii
ENSPLAG00000004111	polr1c	99	65.690	ENSOARG00000007503	POLR1C	69	65.690	Ovis_aries
ENSPLAG00000004111	polr1c	99	65.272	ENSPPAG00000043678	POLR1C	69	65.272	Pan_paniscus
ENSPLAG00000004111	polr1c	99	65.690	ENSPPRG00000009760	POLR1C	69	65.690	Panthera_pardus
ENSPLAG00000004111	polr1c	99	65.690	ENSPTIG00000014813	POLR1C	69	65.690	Panthera_tigris_altaica
ENSPLAG00000004111	polr1c	99	65.272	ENSPTRG00000018202	POLR1C	69	65.272	Pan_troglodytes
ENSPLAG00000004111	polr1c	99	65.272	ENSPANG00000009025	POLR1C	68	65.272	Papio_anubis
ENSPLAG00000004111	polr1c	99	74.477	ENSPKIG00000009858	polr1c	61	80.660	Paramormyrops_kingsleyae
ENSPLAG00000004111	polr1c	99	68.619	ENSPSIG00000012580	POLR1C	65	68.619	Pelodiscus_sinensis
ENSPLAG00000004111	polr1c	99	78.307	ENSPMGG00000012121	polr1c	55	84.568	Periophthalmus_magnuspinnatus
ENSPLAG00000004111	polr1c	99	65.690	ENSPEMG00000006970	Polr1c	69	65.690	Peromyscus_maniculatus_bairdii
ENSPLAG00000004111	polr1c	98	65.546	ENSPMAG00000005560	polr1c	68	65.546	Petromyzon_marinus
ENSPLAG00000004111	polr1c	99	67.782	ENSPCIG00000028137	POLR1C	68	67.782	Phascolarctos_cinereus
ENSPLAG00000004111	polr1c	93	100.000	ENSPFOG00000014357	polr1c	62	100.000	Poecilia_formosa
ENSPLAG00000004111	polr1c	93	100.000	ENSPFOG00000014342	POLR1C	63	100.000	Poecilia_formosa
ENSPLAG00000004111	polr1c	93	100.000	ENSPMEG00000011877	-	63	100.000	Poecilia_mexicana
ENSPLAG00000004111	polr1c	93	100.000	ENSPMEG00000008420	polr1c	63	100.000	Poecilia_mexicana
ENSPLAG00000004111	polr1c	90	99.078	ENSPREG00000007985	polr1c	63	99.078	Poecilia_reticulata
ENSPLAG00000004111	polr1c	99	64.854	ENSPPYG00000016645	POLR1C	70	64.854	Pongo_abelii
ENSPLAG00000004111	polr1c	99	64.017	ENSPCOG00000024628	POLR1C	69	64.017	Propithecus_coquereli
ENSPLAG00000004111	polr1c	78	72.581	ENSPVAG00000005689	POLR1C	54	72.581	Pteropus_vampyrus
ENSPLAG00000004111	polr1c	99	84.100	ENSPNYG00000003620	polr1c	68	84.100	Pundamilia_nyererei
ENSPLAG00000004111	polr1c	99	77.824	ENSPNAG00000008443	polr1c	74	77.824	Pygocentrus_nattereri
ENSPLAG00000004111	polr1c	99	65.690	ENSRNOG00000019079	Polr1c	92	65.690	Rattus_norvegicus
ENSPLAG00000004111	polr1c	99	65.690	ENSRBIG00000007155	POLR1C	69	65.690	Rhinopithecus_bieti
ENSPLAG00000004111	polr1c	99	65.272	ENSRROG00000000257	POLR1C	69	65.272	Rhinopithecus_roxellana
ENSPLAG00000004111	polr1c	88	49.048	YPR110C	RPC40	60	50.246	Saccharomyces_cerevisiae
ENSPLAG00000004111	polr1c	99	65.272	ENSSBOG00000025735	POLR1C	65	65.000	Saimiri_boliviensis_boliviensis
ENSPLAG00000004111	polr1c	99	67.782	ENSSHAG00000014456	POLR1C	71	67.782	Sarcophilus_harrisii
ENSPLAG00000004111	polr1c	99	75.732	ENSSFOG00015019860	polr1c	69	75.732	Scleropages_formosus
ENSPLAG00000004111	polr1c	92	88.235	ENSSMAG00000018865	polr1c	62	90.094	Scophthalmus_maximus
ENSPLAG00000004111	polr1c	99	81.915	ENSSDUG00000015745	polr1c	55	91.038	Seriola_dumerili
ENSPLAG00000004111	polr1c	99	81.915	ENSSLDG00000018285	polr1c	55	91.038	Seriola_lalandi_dorsalis
ENSPLAG00000004111	polr1c	91	72.936	ENSSPUG00000011822	POLR1C	60	73.684	Sphenodon_punctatus
ENSPLAG00000004111	polr1c	88	88.679	ENSSPAG00000022369	polr1c	60	88.679	Stegastes_partitus
ENSPLAG00000004111	polr1c	99	64.854	ENSSSCG00000028007	POLR1C	77	64.854	Sus_scrofa
ENSPLAG00000004111	polr1c	99	67.364	ENSTGUG00000009159	POLR1C	71	67.364	Taeniopygia_guttata
ENSPLAG00000004111	polr1c	93	85.135	ENSTRUG00000006264	polr1c	60	86.792	Takifugu_rubripes
ENSPLAG00000004111	polr1c	53	82.812	ENSTNIG00000019804	polr1c	100	82.812	Tetraodon_nigroviridis
ENSPLAG00000004111	polr1c	74	71.910	ENSTBEG00000002254	POLR1C	100	71.910	Tupaia_belangeri
ENSPLAG00000004111	polr1c	99	64.435	ENSTTRG00000006344	POLR1C	69	64.435	Tursiops_truncatus
ENSPLAG00000004111	polr1c	99	66.109	ENSUAMG00000025602	POLR1C	69	66.109	Ursus_americanus
ENSPLAG00000004111	polr1c	99	66.109	ENSUMAG00000005938	POLR1C	69	66.109	Ursus_maritimus
ENSPLAG00000004111	polr1c	99	62.434	ENSVVUG00000028922	POLR1C	68	62.343	Vulpes_vulpes
ENSPLAG00000004111	polr1c	99	62.917	ENSXETG00000010882	polr1c	61	67.136	Xenopus_tropicalis
ENSPLAG00000004111	polr1c	99	91.667	ENSXCOG00000014185	polr1c	61	98.585	Xiphophorus_couchianus
ENSPLAG00000004111	polr1c	93	98.198	ENSXMAG00000015076	polr1c	63	98.198	Xiphophorus_maculatus