EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSPLAG00000004371 (Gene tree)
Gene ID: 106937925
Gene Symbol: urb1
Alias: -
Full Name: URB1 ribosome biogenesis homolog
Gene Type: protein_coding
Species: Poecilia_latipinna
Status: putative
Strand: Minus strand
Length: 17532 bases
Position: chrKQ547769.1:61465-78996
Accession: 106937925
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPLAP00000020976	Npa1	PF11707.8	5.1e-78	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPLAT00000012151	-	7436	XM_015019678	ENSPLAP00000020976	2173 (aa)	XP_014875164	-

Gene Model

Click here to download ENSPLAG00000004371's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPLAG00000004371's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPLAG00000004371	urb1	99	42.811	ENSG00000142207	URB1	96	42.811	Homo_sapiens
ENSPLAG00000004371	urb1	100	69.143	ENSAPOG00000020308	urb1	97	69.098	Acanthochromis_polyacanthus
ENSPLAG00000004371	urb1	99	43.504	ENSAMEG00000011998	URB1	96	43.600	Ailuropoda_melanoleuca
ENSPLAG00000004371	urb1	97	65.926	ENSACIG00000003248	urb1	95	65.832	Amphilophus_citrinellus
ENSPLAG00000004371	urb1	100	66.034	ENSAOCG00000010364	urb1	97	64.289	Amphiprion_ocellaris
ENSPLAG00000004371	urb1	97	74.194	ENSAPEG00000010758	urb1	96	74.078	Amphiprion_percula
ENSPLAG00000004371	urb1	100	70.698	ENSATEG00000011790	urb1	95	70.698	Anabas_testudineus
ENSPLAG00000004371	urb1	99	44.945	ENSAPLG00000012791	URB1	98	45.036	Anas_platyrhynchos
ENSPLAG00000004371	urb1	99	44.119	ENSACAG00000002817	URB1	96	44.119	Anolis_carolinensis
ENSPLAG00000004371	urb1	99	43.321	ENSANAG00000024617	URB1	96	43.321	Aotus_nancymaae
ENSPLAG00000004371	urb1	100	69.941	ENSACLG00000024865	urb1	97	69.941	Astatotilapia_calliptera
ENSPLAG00000004371	urb1	99	48.822	ENSAMXG00000012306	urb1	96	48.713	Astyanax_mexicanus
ENSPLAG00000004371	urb1	99	42.625	ENSBTAG00000012412	URB1	96	42.760	Bos_taurus
ENSPLAG00000004371	urb1	99	42.450	ENSCJAG00000009118	URB1	96	42.450	Callithrix_jacchus
ENSPLAG00000004371	urb1	99	42.857	ENSCAFG00000008892	URB1	96	42.857	Canis_familiaris
ENSPLAG00000004371	urb1	99	42.579	ENSCAFG00020025987	-	96	42.579	Canis_lupus_dingo
ENSPLAG00000004371	urb1	99	42.172	ENSCAFG00020025994	-	96	42.172	Canis_lupus_dingo
ENSPLAG00000004371	urb1	99	43.115	ENSCHIG00000015645	URB1	96	43.115	Capra_hircus
ENSPLAG00000004371	urb1	99	42.618	ENSTSYG00000013286	URB1	96	42.663	Carlito_syrichta
ENSPLAG00000004371	urb1	100	41.655	ENSCAPG00000015589	URB1	98	41.610	Cavia_aperea
ENSPLAG00000004371	urb1	100	42.650	ENSCPOG00000006748	URB1	97	42.650	Cavia_porcellus
ENSPLAG00000004371	urb1	99	43.361	ENSCCAG00000021299	URB1	95	43.361	Cebus_capucinus
ENSPLAG00000004371	urb1	99	43.131	ENSCATG00000042630	URB1	96	43.236	Cercocebus_atys
ENSPLAG00000004371	urb1	99	43.793	ENSCLAG00000005262	URB1	96	43.793	Chinchilla_lanigera
ENSPLAG00000004371	urb1	99	42.610	ENSCSAG00000009584	URB1	96	42.714	Chlorocebus_sabaeus
ENSPLAG00000004371	urb1	99	45.381	ENSCPBG00000006454	URB1	97	45.516	Chrysemys_picta_bellii
ENSPLAG00000004371	urb1	99	43.443	ENSCANG00000031088	URB1	96	43.496	Colobus_angolensis_palliatus
ENSPLAG00000004371	urb1	99	42.948	ENSCGRG00001010616	Urb1	97	42.948	Cricetulus_griseus_chok1gshd
ENSPLAG00000004371	urb1	99	42.870	ENSCGRG00000015840	Urb1	99	42.870	Cricetulus_griseus_crigri
ENSPLAG00000004371	urb1	100	61.978	ENSCSEG00000012616	urb1	97	61.950	Cynoglossus_semilaevis
ENSPLAG00000004371	urb1	93	82.733	ENSCVAG00000009076	urb1	96	82.733	Cyprinodon_variegatus
ENSPLAG00000004371	urb1	99	51.642	ENSDARG00000060308	urb1	97	51.283	Danio_rerio
ENSPLAG00000004371	urb1	85	46.150	ENSDNOG00000015586	URB1	96	46.203	Dasypus_novemcinctus
ENSPLAG00000004371	urb1	99	43.553	ENSDORG00000006735	Urb1	96	43.590	Dipodomys_ordii
ENSPLAG00000004371	urb1	91	54.664	ENSETEG00000009080	URB1	88	54.664	Echinops_telfairi
ENSPLAG00000004371	urb1	99	42.431	ENSEASG00005007711	URB1	95	44.026	Equus_asinus_asinus
ENSPLAG00000004371	urb1	92	55.181	ENSECAG00000013206	URB1	96	46.359	Equus_caballus
ENSPLAG00000004371	urb1	53	56.904	ENSEEUG00000003626	-	50	56.904	Erinaceus_europaeus
ENSPLAG00000004371	urb1	99	54.975	ENSELUG00000020516	urb1	99	54.122	Esox_lucius
ENSPLAG00000004371	urb1	99	42.430	ENSFCAG00000002177	URB1	96	42.475	Felis_catus
ENSPLAG00000004371	urb1	99	41.046	ENSFALG00000004636	URB1	98	41.174	Ficedula_albicollis
ENSPLAG00000004371	urb1	100	42.973	ENSFDAG00000007288	URB1	92	42.973	Fukomys_damarensis
ENSPLAG00000004371	urb1	99	75.530	ENSFHEG00000000202	urb1	99	79.442	Fundulus_heteroclitus
ENSPLAG00000004371	urb1	94	56.227	ENSGMOG00000001838	urb1	92	56.227	Gadus_morhua
ENSPLAG00000004371	urb1	99	45.160	ENSGALG00000015887	URB1	95	45.160	Gallus_gallus
ENSPLAG00000004371	urb1	99	86.541	ENSGAFG00000020694	urb1	96	87.833	Gambusia_affinis
ENSPLAG00000004371	urb1	99	67.062	ENSGACG00000011703	urb1	98	67.198	Gasterosteus_aculeatus
ENSPLAG00000004371	urb1	99	45.406	ENSGAGG00000022544	URB1	97	45.406	Gopherus_agassizii
ENSPLAG00000004371	urb1	99	43.001	ENSGGOG00000000285	URB1	96	43.001	Gorilla_gorilla
ENSPLAG00000004371	urb1	100	70.032	ENSHBUG00000001904	urb1	97	70.032	Haplochromis_burtoni
ENSPLAG00000004371	urb1	99	42.493	ENSHGLG00000004907	URB1	96	42.493	Heterocephalus_glaber_female
ENSPLAG00000004371	urb1	99	42.870	ENSHGLG00100010749	URB1	96	42.870	Heterocephalus_glaber_male
ENSPLAG00000004371	urb1	74	62.214	ENSHCOG00000018683	urb1	95	59.745	Hippocampus_comes
ENSPLAG00000004371	urb1	99	47.667	ENSIPUG00000014721	urb1	97	47.667	Ictalurus_punctatus
ENSPLAG00000004371	urb1	99	43.401	ENSSTOG00000004539	URB1	96	43.401	Ictidomys_tridecemlineatus
ENSPLAG00000004371	urb1	93	73.841	ENSKMAG00000006001	urb1	96	73.675	Kryptolebias_marmoratus
ENSPLAG00000004371	urb1	97	62.482	ENSLBEG00000027208	urb1	96	62.482	Labrus_bergylta
ENSPLAG00000004371	urb1	99	43.206	ENSLACG00000017059	URB1	97	43.403	Latimeria_chalumnae
ENSPLAG00000004371	urb1	99	51.489	ENSLOCG00000009190	urb1	97	51.489	Lepisosteus_oculatus
ENSPLAG00000004371	urb1	99	43.082	ENSLAFG00000010407	URB1	96	43.082	Loxodonta_africana
ENSPLAG00000004371	urb1	99	43.105	ENSMFAG00000034391	URB1	92	43.144	Macaca_fascicularis
ENSPLAG00000004371	urb1	99	43.235	ENSMMUG00000010295	URB1	96	43.288	Macaca_mulatta
ENSPLAG00000004371	urb1	99	42.550	ENSMNEG00000032981	URB1	96	42.499	Macaca_nemestrina
ENSPLAG00000004371	urb1	99	43.353	ENSMLEG00000041435	URB1	96	43.393	Mandrillus_leucophaeus
ENSPLAG00000004371	urb1	99	66.241	ENSMAMG00000011238	urb1	96	66.241	Mastacembelus_armatus
ENSPLAG00000004371	urb1	100	65.682	ENSMZEG00005011862	urb1	97	65.682	Maylandia_zebra
ENSPLAG00000004371	urb1	99	44.977	ENSMGAG00000014512	URB1	97	44.977	Meleagris_gallopavo
ENSPLAG00000004371	urb1	92	52.932	ENSMAUG00000010516	Urb1	96	52.932	Mesocricetus_auratus
ENSPLAG00000004371	urb1	99	43.108	ENSMICG00000016424	URB1	97	43.198	Microcebus_murinus
ENSPLAG00000004371	urb1	99	42.941	ENSMOCG00000012613	Urb1	96	42.986	Microtus_ochrogaster
ENSPLAG00000004371	urb1	99	42.986	ENSMODG00000021076	URB1	97	42.986	Monodelphis_domestica
ENSPLAG00000004371	urb1	100	64.247	ENSMALG00000017411	urb1	97	64.201	Monopterus_albus
ENSPLAG00000004371	urb1	99	42.792	MGP_CAROLIEiJ_G0020948	Urb1	95	42.883	Mus_caroli
ENSPLAG00000004371	urb1	99	42.864	ENSMUSG00000039929	Urb1	95	42.864	Mus_musculus
ENSPLAG00000004371	urb1	99	42.297	MGP_PahariEiJ_G0016653	Urb1	95	42.297	Mus_pahari
ENSPLAG00000004371	urb1	99	42.974	MGP_SPRETEiJ_G0021854	Urb1	95	43.066	Mus_spretus
ENSPLAG00000004371	urb1	99	43.116	ENSMPUG00000001123	URB1	96	43.116	Mustela_putorius_furo
ENSPLAG00000004371	urb1	99	42.767	ENSNGAG00000001905	Urb1	96	42.767	Nannospalax_galili
ENSPLAG00000004371	urb1	83	68.278	ENSNBRG00000001049	urb1	96	68.278	Neolamprologus_brichardi
ENSPLAG00000004371	urb1	99	41.903	ENSNLEG00000026872	URB1	96	41.949	Nomascus_leucogenys
ENSPLAG00000004371	urb1	90	56.075	ENSMEUG00000010828	URB1	92	40.363	Notamacropus_eugenii
ENSPLAG00000004371	urb1	98	42.389	ENSOPRG00000013482	URB1	96	42.389	Ochotona_princeps
ENSPLAG00000004371	urb1	99	42.974	ENSODEG00000002587	URB1	96	42.883	Octodon_degus
ENSPLAG00000004371	urb1	100	70.502	ENSONIG00000005599	urb1	97	70.502	Oreochromis_niloticus
ENSPLAG00000004371	urb1	99	43.583	ENSOCUG00000009381	URB1	96	43.543	Oryctolagus_cuniculus
ENSPLAG00000004371	urb1	99	67.704	ENSORLG00000003429	urb1	97	67.841	Oryzias_latipes
ENSPLAG00000004371	urb1	99	67.306	ENSORLG00020013785	urb1	99	67.419	Oryzias_latipes_hni
ENSPLAG00000004371	urb1	93	70.752	ENSORLG00015019421	urb1	96	70.752	Oryzias_latipes_hsok
ENSPLAG00000004371	urb1	79	70.403	ENSOMEG00000002094	urb1	95	70.529	Oryzias_melastigma
ENSPLAG00000004371	urb1	99	43.379	ENSOGAG00000017140	URB1	96	43.516	Otolemur_garnettii
ENSPLAG00000004371	urb1	99	40.611	ENSOARG00000013679	URB1	95	47.878	Ovis_aries
ENSPLAG00000004371	urb1	99	42.838	ENSPPAG00000003423	URB1	96	42.838	Pan_paniscus
ENSPLAG00000004371	urb1	99	42.585	ENSPPRG00000023131	URB1	96	42.585	Panthera_pardus
ENSPLAG00000004371	urb1	89	44.122	ENSPTIG00000016125	URB1	92	44.122	Panthera_tigris_altaica
ENSPLAG00000004371	urb1	99	42.746	ENSPTRG00000013852	URB1	96	42.746	Pan_troglodytes
ENSPLAG00000004371	urb1	99	43.294	ENSPANG00000021964	URB1	96	43.347	Papio_anubis
ENSPLAG00000004371	urb1	99	51.776	ENSPKIG00000003683	urb1	95	51.867	Paramormyrops_kingsleyae
ENSPLAG00000004371	urb1	99	42.580	ENSPEMG00000021205	Urb1	95	42.580	Peromyscus_maniculatus_bairdii
ENSPLAG00000004371	urb1	80	33.021	ENSPMAG00000009733	URB1	99	33.297	Petromyzon_marinus
ENSPLAG00000004371	urb1	99	42.541	ENSPCIG00000016350	URB1	97	42.508	Phascolarctos_cinereus
ENSPLAG00000004371	urb1	100	98.024	ENSPMEG00000006634	urb1	97	98.024	Poecilia_mexicana
ENSPLAG00000004371	urb1	100	95.133	ENSPREG00000013453	urb1	97	95.271	Poecilia_reticulata
ENSPLAG00000004371	urb1	99	42.903	ENSPPYG00000011359	URB1	96	42.903	Pongo_abelii
ENSPLAG00000004371	urb1	99	38.524	ENSPCAG00000007430	URB1	96	38.569	Procavia_capensis
ENSPLAG00000004371	urb1	99	42.419	ENSPCOG00000022695	URB1	97	42.606	Propithecus_coquereli
ENSPLAG00000004371	urb1	99	42.308	ENSPVAG00000000889	URB1	96	42.308	Pteropus_vampyrus
ENSPLAG00000004371	urb1	100	66.682	ENSPNYG00000010589	urb1	97	66.682	Pundamilia_nyererei
ENSPLAG00000004371	urb1	99	48.928	ENSPNAG00000019324	urb1	96	48.937	Pygocentrus_nattereri
ENSPLAG00000004371	urb1	99	42.774	ENSRNOG00000002080	Urb1	96	42.774	Rattus_norvegicus
ENSPLAG00000004371	urb1	99	43.169	ENSRBIG00000033122	URB1	96	43.222	Rhinopithecus_bieti
ENSPLAG00000004371	urb1	99	43.144	ENSRROG00000040237	URB1	96	43.196	Rhinopithecus_roxellana
ENSPLAG00000004371	urb1	99	43.347	ENSSBOG00000027672	URB1	96	43.347	Saimiri_boliviensis_boliviensis
ENSPLAG00000004371	urb1	99	42.986	ENSSHAG00000005140	URB1	97	43.031	Sarcophilus_harrisii
ENSPLAG00000004371	urb1	93	54.425	ENSSFOG00015000339	urb1	96	54.470	Scleropages_formosus
ENSPLAG00000004371	urb1	100	69.427	ENSSMAG00000003782	urb1	97	69.486	Scophthalmus_maximus
ENSPLAG00000004371	urb1	100	72.420	ENSSDUG00000012313	urb1	97	72.420	Seriola_dumerili
ENSPLAG00000004371	urb1	100	72.100	ENSSLDG00000023179	urb1	97	72.100	Seriola_lalandi_dorsalis
ENSPLAG00000004371	urb1	99	43.192	ENSSPUG00000012447	URB1	96	43.308	Sphenodon_punctatus
ENSPLAG00000004371	urb1	99	71.207	ENSSPAG00000006325	urb1	97	71.162	Stegastes_partitus
ENSPLAG00000004371	urb1	99	42.909	ENSSSCG00000032024	URB1	96	42.955	Sus_scrofa
ENSPLAG00000004371	urb1	76	47.272	ENSTGUG00000013442	URB1	100	47.212	Taeniopygia_guttata
ENSPLAG00000004371	urb1	99	64.580	ENSTRUG00000009372	urb1	97	64.580	Takifugu_rubripes
ENSPLAG00000004371	urb1	99	62.335	ENSTNIG00000016277	urb1	97	62.335	Tetraodon_nigroviridis
ENSPLAG00000004371	urb1	77	47.893	ENSTBEG00000010044	URB1	75	47.893	Tupaia_belangeri
ENSPLAG00000004371	urb1	89	49.886	ENSTTRG00000007712	URB1	90	48.077	Tursiops_truncatus
ENSPLAG00000004371	urb1	99	43.135	ENSUAMG00000012231	URB1	96	43.232	Ursus_americanus
ENSPLAG00000004371	urb1	89	45.158	ENSUMAG00000017419	URB1	93	44.922	Ursus_maritimus
ENSPLAG00000004371	urb1	63	64.626	ENSVPAG00000001164	URB1	63	64.626	Vicugna_pacos
ENSPLAG00000004371	urb1	99	43.006	ENSVVUG00000000551	URB1	96	43.006	Vulpes_vulpes
ENSPLAG00000004371	urb1	99	43.065	ENSXETG00000009895	urb1	97	42.787	Xenopus_tropicalis
ENSPLAG00000004371	urb1	100	86.009	ENSXCOG00000005500	urb1	96	88.462	Xiphophorus_couchianus
ENSPLAG00000004371	urb1	100	86.606	ENSXMAG00000007253	urb1	96	88.618	Xiphophorus_maculatus