EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSPLAG00000004407 (Gene tree)
Gene ID: 106951921
Gene Symbol: -
Alias: -
Full Name: splicing factor%2C proline- and glutamine-rich-like
Gene Type: protein_coding
Species: Poecilia_latipinna
Status: putative
Strand: Minus strand
Length: 26467 bases
Position: chrKQ545795.1:118789-145255
Accession: 106951921
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPLAP00000020999	RRM_1	PF00076.22	3.3e-31	1	2
ENSPLAP00000020999	RRM_1	PF00076.22	3.3e-31	2	2
ENSPLAP00000003011	RRM_1	PF00076.22	3.6e-31	1	2
ENSPLAP00000003011	RRM_1	PF00076.22	3.6e-31	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPLAT00000012098	-	2534	XM_015039701	ENSPLAP00000003011	717 (aa)	XP_014895187	UPI00072DD0CF
ENSPLAT00000012088	-	2299	-	ENSPLAP00000020999	688 (aa)	-	-

Gene Model

Click here to download ENSPLAG00000004407's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPLAG00000004407's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSPLAG00000004407	-	59	53.982	ENSPLAG00000011540	pspc1	62	59.692
ENSPLAG00000004407	-	54	58.639	ENSPLAG00000017492	nono	93	55.687

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPLAG00000004407	-	52	60.647	ENSG00000121390	PSPC1	81	68.159	Homo_sapiens
ENSPLAG00000004407	-	53	55.128	ENSAPOG00000015946	pspc1	82	54.713	Acanthochromis_polyacanthus
ENSPLAG00000004407	-	53	60.212	ENSAMEG00000017420	PSPC1	69	64.658	Ailuropoda_melanoleuca
ENSPLAG00000004407	-	56	53.528	ENSAOCG00000005279	pspc1	82	54.566	Amphiprion_ocellaris
ENSPLAG00000004407	-	56	53.528	ENSAPEG00000015927	pspc1	83	54.338	Amphiprion_percula
ENSPLAG00000004407	-	58	69.676	ENSAPLG00000003643	SFPQ	83	67.824	Anas_platyrhynchos
ENSPLAG00000004407	-	58	65.904	ENSACAG00000013307	-	68	65.675	Anolis_carolinensis
ENSPLAG00000004407	-	50	68.091	ENSACAG00000002093	PSPC1	69	66.213	Anolis_carolinensis
ENSPLAG00000004407	-	53	60.209	ENSANAG00000000059	PSPC1	78	67.974	Aotus_nancymaae
ENSPLAG00000004407	-	55	59.487	ENSBTAG00000003934	PSPC1	70	63.757	Bos_taurus
ENSPLAG00000004407	-	53	60.209	ENSCJAG00000004554	PSPC1	70	64.595	Callithrix_jacchus
ENSPLAG00000004407	-	51	60.976	ENSCAFG00020002009	PSPC1	76	68.687	Canis_lupus_dingo
ENSPLAG00000004407	-	55	59.487	ENSCHIG00000016708	PSPC1	70	63.757	Capra_hircus
ENSPLAG00000004407	-	52	60.377	ENSCPOG00000000395	PSPC1	76	68.475	Cavia_porcellus
ENSPLAG00000004407	-	53	60.209	ENSCCAG00000033498	PSPC1	70	64.595	Cebus_capucinus
ENSPLAG00000004407	-	52	60.377	ENSCATG00000036434	PSPC1	83	67.774	Cercocebus_atys
ENSPLAG00000004407	-	50	67.521	ENSCPBG00000020859	PSPC1	67	67.521	Chrysemys_picta_bellii
ENSPLAG00000004407	-	53	60.105	ENSCGRG00001018368	Pspc1	70	64.499	Cricetulus_griseus_chok1gshd
ENSPLAG00000004407	-	53	60.105	ENSCGRG00000011724	Pspc1	70	64.499	Cricetulus_griseus_crigri
ENSPLAG00000004407	-	63	51.844	ENSDARG00000006621	pspc1	77	56.782	Danio_rerio
ENSPLAG00000004407	-	52	60.377	ENSDNOG00000011078	PSPC1	70	64.324	Dasypus_novemcinctus
ENSPLAG00000004407	-	52	58.177	ENSDORG00000016050	Pspc1	70	62.162	Dipodomys_ordii
ENSPLAG00000004407	-	56	62.500	ENSEBUG00000003964	-	81	58.316	Eptatretus_burgeri
ENSPLAG00000004407	-	51	61.035	ENSEASG00005000119	PSPC1	76	68.350	Equus_asinus_asinus
ENSPLAG00000004407	-	51	61.035	ENSECAG00000017286	PSPC1	76	68.350	Equus_caballus
ENSPLAG00000004407	-	50	62.291	ENSELUG00000003746	pspc1	82	59.610	Esox_lucius
ENSPLAG00000004407	-	52	60.647	ENSFCAG00000027841	PSPC1	76	68.687	Felis_catus
ENSPLAG00000004407	-	50	68.091	ENSFALG00000008750	PSPC1	66	68.091	Ficedula_albicollis
ENSPLAG00000004407	-	52	60.377	ENSFDAG00000002617	PSPC1	70	64.903	Fukomys_damarensis
ENSPLAG00000004407	-	50	68.091	ENSGALG00000017142	PSPC1	69	67.033	Gallus_gallus
ENSPLAG00000004407	-	50	67.521	ENSGAGG00000019164	PSPC1	67	67.521	Gopherus_agassizii
ENSPLAG00000004407	-	52	60.647	ENSGGOG00000003414	PSPC1	76	68.687	Gorilla_gorilla
ENSPLAG00000004407	-	59	51.116	ENSHBUG00000001139	pspc1	83	51.461	Haplochromis_burtoni
ENSPLAG00000004407	-	52	60.377	ENSHGLG00000018811	PSPC1	68	64.903	Heterocephalus_glaber_female
ENSPLAG00000004407	-	52	64.525	ENSIPUG00000013192	pspc1	70	63.686	Ictalurus_punctatus
ENSPLAG00000004407	-	53	59.948	ENSSTOG00000026833	PSPC1	76	68.350	Ictidomys_tridecemlineatus
ENSPLAG00000004407	-	53	60.367	ENSJJAG00000018334	Pspc1	70	64.770	Jaculus_jaculus
ENSPLAG00000004407	-	59	51.136	ENSLBEG00000004474	pspc1	81	50.114	Labrus_bergylta
ENSPLAG00000004407	-	54	58.924	ENSLOCG00000010832	pspc1	68	62.147	Lepisosteus_oculatus
ENSPLAG00000004407	-	52	63.215	ENSLAFG00000010968	PSPC1	68	64.903	Loxodonta_africana
ENSPLAG00000004407	-	52	60.647	ENSMFAG00000032728	PSPC1	84	68.106	Macaca_fascicularis
ENSPLAG00000004407	-	52	60.647	ENSMMUG00000020262	PSPC1	81	68.106	Macaca_mulatta
ENSPLAG00000004407	-	52	60.647	ENSMNEG00000027401	PSPC1	77	64.658	Macaca_nemestrina
ENSPLAG00000004407	-	53	53.704	ENSMAMG00000004333	pspc1	78	51.157	Mastacembelus_armatus
ENSPLAG00000004407	-	53	59.621	ENSMAUG00000021067	Pspc1	78	55.914	Mesocricetus_auratus
ENSPLAG00000004407	-	52	60.590	ENSMICG00000013970	PSPC1	76	68.687	Microcebus_murinus
ENSPLAG00000004407	-	53	60.105	ENSMOCG00000006060	Pspc1	70	64.499	Microtus_ochrogaster
ENSPLAG00000004407	-	53	64.932	ENSMODG00000008029	PSPC1	59	64.054	Monodelphis_domestica
ENSPLAG00000004407	-	59	50.333	ENSMALG00000008914	pspc1	84	51.225	Monopterus_albus
ENSPLAG00000004407	-	53	64.770	MGP_CAROLIEiJ_G0019341	Pspc1	84	71.429	Mus_caroli
ENSPLAG00000004407	-	53	64.770	ENSMUSG00000021938	Pspc1	83	71.429	Mus_musculus
ENSPLAG00000004407	-	53	64.770	MGP_PahariEiJ_G0030359	Pspc1	84	71.429	Mus_pahari
ENSPLAG00000004407	-	53	64.770	MGP_SPRETEiJ_G0020232	Pspc1	84	71.429	Mus_spretus
ENSPLAG00000004407	-	52	60.647	ENSMPUG00000013347	PSPC1	68	65.181	Mustela_putorius_furo
ENSPLAG00000004407	-	51	60.054	ENSMLUG00000017663	PSPC1	69	63.736	Myotis_lucifugus
ENSPLAG00000004407	-	53	60.367	ENSNGAG00000011271	Pspc1	70	64.770	Nannospalax_galili
ENSPLAG00000004407	-	52	60.647	ENSNLEG00000001294	PSPC1	69	64.658	Nomascus_leucogenys
ENSPLAG00000004407	-	52	61.625	ENSODEG00000019012	-	68	60.446	Octodon_degus
ENSPLAG00000004407	-	52	52.198	ENSODEG00000007817	-	67	51.093	Octodon_degus
ENSPLAG00000004407	-	59	50.998	ENSONIG00000012010	pspc1	83	51.461	Oreochromis_niloticus
ENSPLAG00000004407	-	52	60.377	ENSOCUG00000006153	PSPC1	70	64.324	Oryctolagus_cuniculus
ENSPLAG00000004407	-	54	53.563	ENSORLG00000004232	-	76	54.774	Oryzias_latipes
ENSPLAG00000004407	-	54	56.468	ENSORLG00020000578	PSPC1	76	55.584	Oryzias_latipes_hni
ENSPLAG00000004407	-	54	55.473	ENSORLG00015017480	pspc1	84	51.818	Oryzias_latipes_hsok
ENSPLAG00000004407	-	53	60.212	ENSOGAG00000012643	PSPC1	70	64.595	Otolemur_garnettii
ENSPLAG00000004407	-	50	61.602	ENSOARG00000014163	PSPC1	72	63.218	Ovis_aries
ENSPLAG00000004407	-	52	60.647	ENSPPRG00000008833	PSPC1	69	64.658	Panthera_pardus
ENSPLAG00000004407	-	52	60.647	ENSPTRG00000005677	PSPC1	80	66.901	Pan_troglodytes
ENSPLAG00000004407	-	52	60.647	ENSPANG00000001992	PSPC1	83	68.106	Papio_anubis
ENSPLAG00000004407	-	55	61.842	ENSPKIG00000003578	pspc1	73	60.769	Paramormyrops_kingsleyae
ENSPLAG00000004407	-	50	67.236	ENSPSIG00000005168	PSPC1	66	67.236	Pelodiscus_sinensis
ENSPLAG00000004407	-	53	60.367	ENSPEMG00000015214	Pspc1	70	64.770	Peromyscus_maniculatus_bairdii
ENSPLAG00000004407	-	53	64.110	ENSPCIG00000017680	PSPC1	70	64.054	Phascolarctos_cinereus
ENSPLAG00000004407	-	59	53.540	ENSPFOG00000003362	pspc1	62	59.692	Poecilia_formosa
ENSPLAG00000004407	-	59	54.204	ENSPMEG00000008322	pspc1	62	60.000	Poecilia_mexicana
ENSPLAG00000004407	-	100	98.069	ENSPMEG00000001025	-	100	98.069	Poecilia_mexicana
ENSPLAG00000004407	-	59	53.982	ENSPREG00000007786	pspc1	62	59.692	Poecilia_reticulata
ENSPLAG00000004407	-	50	61.326	ENSPPYG00000005186	PSPC1	76	65.097	Pongo_abelii
ENSPLAG00000004407	-	51	61.035	ENSPVAG00000005036	PSPC1	69	65.097	Pteropus_vampyrus
ENSPLAG00000004407	-	51	64.770	ENSRNOG00000020782	Pspc1	79	64.770	Rattus_norvegicus
ENSPLAG00000004407	-	55	58.824	ENSRBIG00000036057	PSPC1	97	64.286	Rhinopithecus_bieti
ENSPLAG00000004407	-	55	58.824	ENSRROG00000036334	PSPC1	81	63.444	Rhinopithecus_roxellana
ENSPLAG00000004407	-	53	60.218	ENSSHAG00000004696	PSPC1	70	59.409	Sarcophilus_harrisii
ENSPLAG00000004407	-	55	59.847	ENSSFOG00015001395	pspc1	81	59.278	Scleropages_formosus
ENSPLAG00000004407	-	54	54.034	ENSSDUG00000010651	pspc1	77	52.817	Seriola_dumerili
ENSPLAG00000004407	-	59	46.739	ENSSPUG00000008550	PSPC1	58	66.207	Sphenodon_punctatus
ENSPLAG00000004407	-	59	63.532	ENSSPUG00000001136	-	82	53.125	Sphenodon_punctatus
ENSPLAG00000004407	-	53	56.878	ENSSPAG00000001921	pspc1	80	52.727	Stegastes_partitus
ENSPLAG00000004407	-	51	61.475	ENSSSCG00000009569	PSPC1	77	69.024	Sus_scrofa
ENSPLAG00000004407	-	50	68.091	ENSTGUG00000011295	PSPC1	75	68.091	Taeniopygia_guttata
ENSPLAG00000004407	-	65	44.353	ENSTRUG00000011335	pspc1	75	51.508	Takifugu_rubripes
ENSPLAG00000004407	-	53	52.792	ENSTNIG00000010358	pspc1	90	47.122	Tetraodon_nigroviridis
ENSPLAG00000004407	-	51	58.074	ENSTBEG00000002361	PSPC1	68	58.074	Tupaia_belangeri
ENSPLAG00000004407	-	52	60.858	ENSTTRG00000003343	PSPC1	69	65.374	Tursiops_truncatus
ENSPLAG00000004407	-	53	59.947	ENSUMAG00000013993	PSPC1	84	67.774	Ursus_maritimus
ENSPLAG00000004407	-	51	60.976	ENSVVUG00000006414	PSPC1	77	68.687	Vulpes_vulpes