EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSPLAG00000005094 (Gene tree)
Gene ID: 106953100
Gene Symbol: UPF2
Alias: -
Full Name: UPF2%2C regulator of nonsense mediated mRNA decay
Gene Type: protein_coding
Species: Poecilia_latipinna
Status: putative
Strand: Minus strand
Length: 29113 bases
Position: chrKQ545875.1:219422-248534
Accession: 106953100
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPLAP00000021363	Upf2	PF04050.14	1.5e-32	1	1
ENSPLAP00000021362	Upf2	PF04050.14	1.7e-32	1	1
ENSPLAP00000021363	MIF4G	PF02854.19	6e-80	1	3
ENSPLAP00000021363	MIF4G	PF02854.19	6e-80	2	3
ENSPLAP00000021363	MIF4G	PF02854.19	6e-80	3	3
ENSPLAP00000021362	MIF4G	PF02854.19	6.8e-80	1	3
ENSPLAP00000021362	MIF4G	PF02854.19	6.8e-80	2	3
ENSPLAP00000021362	MIF4G	PF02854.19	6.8e-80	3	3

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPLAT00000011175	UPF2-201	6157	XM_015041651	ENSPLAP00000021363	1275 (aa)	XP_014897137	UPI00072E69D9
ENSPLAT00000011187	UPF2-202	4235	XM_015041647	ENSPLAP00000021362	1307 (aa)	XP_014897133	UPI00072EC56C

Gene Model

Click here to download ENSPLAG00000005094's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPLAG00000005094's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPLAG00000005094	UPF2	100	81.917	ENSG00000151461	UPF2	100	79.844	Homo_sapiens
ENSPLAG00000005094	UPF2	99	88.619	ENSAPOG00000015837	UPF2	100	88.263	Acanthochromis_polyacanthus
ENSPLAG00000005094	UPF2	100	82.371	ENSAMEG00000004586	UPF2	100	80.187	Ailuropoda_melanoleuca
ENSPLAG00000005094	UPF2	99	93.652	ENSACIG00000018078	UPF2	100	94.044	Amphilophus_citrinellus
ENSPLAG00000005094	UPF2	100	94.671	ENSAOCG00000016766	UPF2	100	94.671	Amphiprion_ocellaris
ENSPLAG00000005094	UPF2	100	94.749	ENSAPEG00000019084	UPF2	100	94.749	Amphiprion_percula
ENSPLAG00000005094	UPF2	100	93.584	ENSATEG00000021677	UPF2	99	93.975	Anabas_testudineus
ENSPLAG00000005094	UPF2	100	78.460	ENSAPLG00000010287	UPF2	90	83.004	Anas_platyrhynchos
ENSPLAG00000005094	UPF2	100	82.293	ENSACAG00000009259	UPF2	100	82.605	Anolis_carolinensis
ENSPLAG00000005094	UPF2	91	78.694	ENSANAG00000028451	UPF2	93	79.074	Aotus_nancymaae
ENSPLAG00000005094	UPF2	100	93.505	ENSACLG00000012696	UPF2	100	93.897	Astatotilapia_calliptera
ENSPLAG00000005094	UPF2	99	88.507	ENSAMXG00000013700	UPF2	99	86.161	Astyanax_mexicanus
ENSPLAG00000005094	UPF2	100	82.215	ENSBTAG00000000288	UPF2	100	80.187	Bos_taurus
ENSPLAG00000005094	UPF2	100	81.747	ENSCJAG00000020685	UPF2	100	79.953	Callithrix_jacchus
ENSPLAG00000005094	UPF2	100	82.371	ENSCAFG00000004839	UPF2	100	80.187	Canis_familiaris
ENSPLAG00000005094	UPF2	95	86.364	ENSCAFG00020005882	UPF2	98	80.039	Canis_lupus_dingo
ENSPLAG00000005094	UPF2	100	82.371	ENSCHIG00000020359	UPF2	100	80.187	Capra_hircus
ENSPLAG00000005094	UPF2	100	82.059	ENSTSYG00000000935	UPF2	97	85.311	Carlito_syrichta
ENSPLAG00000005094	UPF2	91	74.166	ENSCAPG00000016658	UPF2	95	74.274	Cavia_aperea
ENSPLAG00000005094	UPF2	99	79.167	ENSCPOG00000008809	UPF2	92	82.977	Cavia_porcellus
ENSPLAG00000005094	UPF2	100	75.741	ENSCCAG00000035991	UPF2	100	73.947	Cebus_capucinus
ENSPLAG00000005094	UPF2	100	81.917	ENSCATG00000032679	UPF2	100	79.891	Cercocebus_atys
ENSPLAG00000005094	UPF2	100	81.187	ENSCLAG00000011434	UPF2	100	80.328	Chinchilla_lanigera
ENSPLAG00000005094	UPF2	100	81.917	ENSCSAG00000013372	UPF2	100	79.891	Chlorocebus_sabaeus
ENSPLAG00000005094	UPF2	79	89.333	ENSCHOG00000000422	UPF2	83	89.333	Choloepus_hoffmanni
ENSPLAG00000005094	UPF2	99	80.986	ENSCPBG00000027823	UPF2	100	81.142	Chrysemys_picta_bellii
ENSPLAG00000005094	UPF2	79	49.066	ENSCSAVG00000007772	-	99	47.839	Ciona_savignyi
ENSPLAG00000005094	UPF2	99	76.762	ENSCANG00000040396	UPF2	100	75.039	Colobus_angolensis_palliatus
ENSPLAG00000005094	UPF2	100	81.655	ENSCGRG00001019347	Upf2	100	79.469	Cricetulus_griseus_chok1gshd
ENSPLAG00000005094	UPF2	100	81.655	ENSCGRG00000017993	Upf2	100	79.469	Cricetulus_griseus_crigri
ENSPLAG00000005094	UPF2	99	85.535	ENSCSEG00000003520	UPF2	99	84.953	Cynoglossus_semilaevis
ENSPLAG00000005094	UPF2	99	96.603	ENSCVAG00000006167	UPF2	100	96.603	Cyprinodon_variegatus
ENSPLAG00000005094	UPF2	100	82.137	ENSDNOG00000018160	UPF2	100	80.187	Dasypus_novemcinctus
ENSPLAG00000005094	UPF2	100	81.591	ENSDORG00000002478	Upf2	100	79.439	Dipodomys_ordii
ENSPLAG00000005094	UPF2	89	35.650	FBgn0029992	Upf2	73	39.274	Drosophila_melanogaster
ENSPLAG00000005094	UPF2	73	92.701	ENSETEG00000011583	-	62	92.647	Echinops_telfairi
ENSPLAG00000005094	UPF2	64	71.523	ENSEBUG00000012448	-	93	69.012	Eptatretus_burgeri
ENSPLAG00000005094	UPF2	100	81.187	ENSEASG00005019274	UPF2	100	80.406	Equus_asinus_asinus
ENSPLAG00000005094	UPF2	100	81.187	ENSECAG00000017022	UPF2	100	80.406	Equus_caballus
ENSPLAG00000005094	UPF2	82	74.214	ENSEEUG00000007819	UPF2	69	84.772	Erinaceus_europaeus
ENSPLAG00000005094	UPF2	99	87.666	ENSELUG00000012014	UPF2	100	87.207	Esox_lucius
ENSPLAG00000005094	UPF2	100	85.246	ENSFCAG00000005785	UPF2	100	80.265	Felis_catus
ENSPLAG00000005094	UPF2	100	83.307	ENSFALG00000001889	UPF2	98	83.463	Ficedula_albicollis
ENSPLAG00000005094	UPF2	100	80.718	ENSFDAG00000014348	UPF2	100	79.938	Fukomys_damarensis
ENSPLAG00000005094	UPF2	99	96.838	ENSFHEG00000009826	UPF2	100	96.838	Fundulus_heteroclitus
ENSPLAG00000005094	UPF2	99	86.193	ENSGMOG00000005557	UPF2	100	86.115	Gadus_morhua
ENSPLAG00000005094	UPF2	100	83.242	ENSGALG00000033772	UPF2	100	82.893	Gallus_gallus
ENSPLAG00000005094	UPF2	100	98.546	ENSGAFG00000020867	UPF2	100	98.546	Gambusia_affinis
ENSPLAG00000005094	UPF2	99	90.539	ENSGACG00000001080	UPF2	100	90.696	Gasterosteus_aculeatus
ENSPLAG00000005094	UPF2	100	82.059	ENSGAGG00000002700	UPF2	100	82.293	Gopherus_agassizii
ENSPLAG00000005094	UPF2	100	81.917	ENSGGOG00000001479	UPF2	100	79.891	Gorilla_gorilla
ENSPLAG00000005094	UPF2	100	93.349	ENSHBUG00000004249	UPF2	100	93.887	Haplochromis_burtoni
ENSPLAG00000005094	UPF2	100	80.796	ENSHGLG00000015176	-	100	79.938	Heterocephalus_glaber_female
ENSPLAG00000005094	UPF2	99	72.166	ENSHGLG00000003822	-	99	72.400	Heterocephalus_glaber_female
ENSPLAG00000005094	UPF2	99	78.655	ENSHGLG00100010036	UPF2	95	81.045	Heterocephalus_glaber_male
ENSPLAG00000005094	UPF2	100	89.852	ENSHCOG00000004025	UPF2	99	89.852	Hippocampus_comes
ENSPLAG00000005094	UPF2	100	87.510	ENSIPUG00000015524	UPF2	100	87.198	Ictalurus_punctatus
ENSPLAG00000005094	UPF2	100	82.137	ENSSTOG00000013075	UPF2	100	79.907	Ictidomys_tridecemlineatus
ENSPLAG00000005094	UPF2	100	78.689	ENSJJAG00000004913	Upf2	100	79.034	Jaculus_jaculus
ENSPLAG00000005094	UPF2	99	93.454	ENSKMAG00000001071	UPF2	100	93.533	Kryptolebias_marmoratus
ENSPLAG00000005094	UPF2	80	89.226	ENSLBEG00000000728	-	94	89.659	Labrus_bergylta
ENSPLAG00000005094	UPF2	100	92.019	ENSLBEG00000016394	-	99	92.801	Labrus_bergylta
ENSPLAG00000005094	UPF2	99	75.916	ENSLACG00000015945	UPF2	99	76.150	Latimeria_chalumnae
ENSPLAG00000005094	UPF2	99	87.717	ENSLOCG00000015698	UPF2	100	87.323	Lepisosteus_oculatus
ENSPLAG00000005094	UPF2	100	81.917	ENSMFAG00000043865	UPF2	100	79.891	Macaca_fascicularis
ENSPLAG00000005094	UPF2	100	81.917	ENSMMUG00000008241	UPF2	100	79.891	Macaca_mulatta
ENSPLAG00000005094	UPF2	80	82.456	ENSMNEG00000008062	UPF2	99	79.435	Macaca_nemestrina
ENSPLAG00000005094	UPF2	99	79.875	ENSMLEG00000036120	UPF2	100	77.752	Mandrillus_leucophaeus
ENSPLAG00000005094	UPF2	100	91.706	ENSMAMG00000018276	UPF2	100	93.740	Mastacembelus_armatus
ENSPLAG00000005094	UPF2	100	93.505	ENSMZEG00005021595	UPF2	100	93.897	Maylandia_zebra
ENSPLAG00000005094	UPF2	99	82.694	ENSMGAG00000004573	UPF2	99	82.422	Meleagris_gallopavo
ENSPLAG00000005094	UPF2	100	79.625	ENSMAUG00000016512	Upf2	100	77.440	Mesocricetus_auratus
ENSPLAG00000005094	UPF2	99	79.688	ENSMICG00000001716	UPF2	100	76.989	Microcebus_murinus
ENSPLAG00000005094	UPF2	100	80.625	ENSMOCG00000008263	Upf2	100	79.766	Microtus_ochrogaster
ENSPLAG00000005094	UPF2	99	88.697	ENSMMOG00000006528	UPF2	100	88.776	Mola_mola
ENSPLAG00000005094	UPF2	100	80.187	ENSMODG00000016794	UPF2	92	85.324	Monodelphis_domestica
ENSPLAG00000005094	UPF2	99	92.386	ENSMALG00000002663	UPF2	100	92.465	Monopterus_albus
ENSPLAG00000005094	UPF2	100	81.421	MGP_CAROLIEiJ_G0023157	Upf2	99	84.435	Mus_caroli
ENSPLAG00000005094	UPF2	100	81.577	ENSMUSG00000043241	Upf2	99	83.585	Mus_musculus
ENSPLAG00000005094	UPF2	100	81.811	MGP_PahariEiJ_G0019217	Upf2	100	83.396	Mus_pahari
ENSPLAG00000005094	UPF2	100	81.811	MGP_SPRETEiJ_G0024075	Upf2	100	83.585	Mus_spretus
ENSPLAG00000005094	UPF2	100	82.293	ENSMPUG00000001064	UPF2	100	80.265	Mustela_putorius_furo
ENSPLAG00000005094	UPF2	99	81.279	ENSMLUG00000000228	UPF2	100	79.283	Myotis_lucifugus
ENSPLAG00000005094	UPF2	100	93.505	ENSNBRG00000013629	UPF2	100	93.897	Neolamprologus_brichardi
ENSPLAG00000005094	UPF2	100	81.839	ENSNLEG00000012058	UPF2	100	79.813	Nomascus_leucogenys
ENSPLAG00000005094	UPF2	72	93.662	ENSOPRG00000006801	-	73	93.662	Ochotona_princeps
ENSPLAG00000005094	UPF2	100	80.763	ENSODEG00000001290	UPF2	100	79.984	Octodon_degus
ENSPLAG00000005094	UPF2	100	93.114	ENSONIG00000017991	UPF2	100	93.505	Oreochromis_niloticus
ENSPLAG00000005094	UPF2	99	79.689	ENSOCUG00000006230	UPF2	100	79.844	Oryctolagus_cuniculus
ENSPLAG00000005094	UPF2	100	91.856	ENSORLG00000017189	UPF2	100	92.091	Oryzias_latipes
ENSPLAG00000005094	UPF2	100	91.934	ENSORLG00020005969	UPF2	100	92.169	Oryzias_latipes_hni
ENSPLAG00000005094	UPF2	100	91.934	ENSORLG00015005713	UPF2	100	92.169	Oryzias_latipes_hsok
ENSPLAG00000005094	UPF2	99	88.776	ENSOMEG00000023420	UPF2	99	88.068	Oryzias_melastigma
ENSPLAG00000005094	UPF2	100	82.059	ENSOGAG00000005796	UPF2	100	79.641	Otolemur_garnettii
ENSPLAG00000005094	UPF2	100	82.243	ENSOARG00000014587	UPF2	100	80.062	Ovis_aries
ENSPLAG00000005094	UPF2	99	79.407	ENSPPAG00000037953	UPF2	100	77.241	Pan_paniscus
ENSPLAG00000005094	UPF2	100	82.449	ENSPPRG00000000690	UPF2	100	80.265	Panthera_pardus
ENSPLAG00000005094	UPF2	100	82.449	ENSPTIG00000008867	UPF2	100	80.265	Panthera_tigris_altaica
ENSPLAG00000005094	UPF2	100	81.917	ENSPTRG00000002291	UPF2	100	79.891	Pan_troglodytes
ENSPLAG00000005094	UPF2	100	81.917	ENSPANG00000023399	UPF2	100	79.891	Papio_anubis
ENSPLAG00000005094	UPF2	100	87.578	ENSPKIG00000025502	UPF2	100	86.172	Paramormyrops_kingsleyae
ENSPLAG00000005094	UPF2	59	81.291	ENSPSIG00000015158	UPF2	95	80.764	Pelodiscus_sinensis
ENSPLAG00000005094	UPF2	99	88.924	ENSPMGG00000005259	UPF2	100	88.688	Periophthalmus_magnuspinnatus
ENSPLAG00000005094	UPF2	93	74.063	ENSPEMG00000015731	Upf2	90	82.700	Peromyscus_maniculatus_bairdii
ENSPLAG00000005094	UPF2	100	82.101	ENSPCIG00000006656	UPF2	100	80.156	Phascolarctos_cinereus
ENSPLAG00000005094	UPF2	100	99.922	ENSPFOG00000017118	UPF2	100	99.922	Poecilia_formosa
ENSPLAG00000005094	UPF2	100	99.770	ENSPMEG00000017009	UPF2	100	99.770	Poecilia_mexicana
ENSPLAG00000005094	UPF2	99	98.036	ENSPREG00000021880	UPF2	100	98.036	Poecilia_reticulata
ENSPLAG00000005094	UPF2	66	84.698	ENSPPYG00000002089	-	100	85.291	Pongo_abelii
ENSPLAG00000005094	UPF2	100	69.704	ENSPCAG00000000684	UPF2	86	75.456	Procavia_capensis
ENSPLAG00000005094	UPF2	99	79.141	ENSPCOG00000021656	UPF2	100	77.578	Propithecus_coquereli
ENSPLAG00000005094	UPF2	100	75.760	ENSPVAG00000017286	UPF2	100	73.655	Pteropus_vampyrus
ENSPLAG00000005094	UPF2	99	90.909	ENSPNYG00000017096	UPF2	100	91.301	Pundamilia_nyererei
ENSPLAG00000005094	UPF2	100	89.071	ENSPNAG00000009357	UPF2	100	88.915	Pygocentrus_nattereri
ENSPLAG00000005094	UPF2	99	77.494	ENSRNOG00000023593	Upf2	100	93.333	Rattus_norvegicus
ENSPLAG00000005094	UPF2	99	80.703	ENSRBIG00000037780	UPF2	100	78.499	Rhinopithecus_bieti
ENSPLAG00000005094	UPF2	100	81.684	ENSRROG00000043547	UPF2	100	79.579	Rhinopithecus_roxellana
ENSPLAG00000005094	UPF2	100	81.669	ENSSBOG00000020012	UPF2	100	79.719	Saimiri_boliviensis_boliviensis
ENSPLAG00000005094	UPF2	100	86.261	ENSSFOG00015023788	upf2	100	86.105	Scleropages_formosus
ENSPLAG00000005094	UPF2	90	91.580	ENSSMAG00000007637	UPF2	100	90.358	Scophthalmus_maximus
ENSPLAG00000005094	UPF2	100	94.514	ENSSDUG00000017244	UPF2	99	94.514	Seriola_dumerili
ENSPLAG00000005094	UPF2	99	90.895	ENSSLDG00000016866	UPF2	100	90.659	Seriola_lalandi_dorsalis
ENSPLAG00000005094	UPF2	100	79.095	ENSSARG00000008615	UPF2	100	81.357	Sorex_araneus
ENSPLAG00000005094	UPF2	99	80.218	ENSSPUG00000014544	UPF2	99	80.530	Sphenodon_punctatus
ENSPLAG00000005094	UPF2	68	84.571	ENSSSCG00000011117	-	99	85.029	Sus_scrofa
ENSPLAG00000005094	UPF2	99	83.268	ENSTGUG00000002163	-	100	83.268	Taeniopygia_guttata
ENSPLAG00000005094	UPF2	100	91.236	ENSTRUG00000007519	UPF2	99	91.549	Takifugu_rubripes
ENSPLAG00000005094	UPF2	100	88.281	ENSTNIG00000004453	UPF2	100	88.516	Tetraodon_nigroviridis
ENSPLAG00000005094	UPF2	93	72.460	ENSTBEG00000012679	UPF2	93	72.712	Tupaia_belangeri
ENSPLAG00000005094	UPF2	100	81.343	ENSTTRG00000016388	UPF2	100	80.406	Tursiops_truncatus
ENSPLAG00000005094	UPF2	87	93.258	ENSUAMG00000023560	UPF2	98	93.258	Ursus_americanus
ENSPLAG00000005094	UPF2	100	82.371	ENSUMAG00000012953	UPF2	95	80.140	Ursus_maritimus
ENSPLAG00000005094	UPF2	82	96.774	ENSVPAG00000006763	UPF2	85	96.774	Vicugna_pacos
ENSPLAG00000005094	UPF2	100	82.371	ENSVVUG00000006166	UPF2	100	80.187	Vulpes_vulpes
ENSPLAG00000005094	UPF2	100	79.439	ENSXETG00000033103	UPF2	91	83.721	Xenopus_tropicalis
ENSPLAG00000005094	UPF2	99	98.900	ENSXCOG00000011604	UPF2	100	98.900	Xiphophorus_couchianus
ENSPLAG00000005094	UPF2	100	99.082	ENSXMAG00000017209	UPF2	100	99.082	Xiphophorus_maculatus