EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSPLAG00000005105 (Gene tree)
Gene ID: 106940254
Gene Symbol: upf3b (1 of many)
Alias: -
Full Name: regulator of nonsense transcripts 3B-like
Gene Type: protein_coding
Species: Poecilia_latipinna
Status: putative
Strand: Minus strand
Length: 8221 bases
Position: chrKQ548415.1:29448-37668
Accession: 106940254
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPLAP00000021388	Smg4_UPF3	PF03467.15	3.8e-54	1	1
ENSPLAP00000003576	Smg4_UPF3	PF03467.15	4.2e-54	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPLAT00000011124	-	3650	XM_015022943	ENSPLAP00000003576	453 (aa)	XP_014878429	UPI00072E57E6
ENSPLAT00000011138	-	1323	-	ENSPLAP00000021388	440 (aa)	-	-

Gene Model

Click here to download ENSPLAG00000005105's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPLAG00000005105's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSPLAG00000005105	upf3b	100	100.000	ENSPLAG00000019922	upf3b	100	100.000
ENSPLAG00000005105	upf3b	91	48.941	ENSPLAG00000011960	upf3a	86	50.361

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPLAG00000005105	upf3b	96	56.616	ENSG00000125351	UPF3B	96	66.507	Homo_sapiens
ENSPLAG00000005105	upf3b	88	47.188	ENSG00000169062	UPF3A	82	41.832	Homo_sapiens
ENSPLAG00000005105	upf3b	100	81.441	ENSAPOG00000012775	upf3b	100	80.786	Acanthochromis_polyacanthus
ENSPLAG00000005105	upf3b	96	57.050	ENSAMEG00000000163	UPF3B	96	56.388	Ailuropoda_melanoleuca
ENSPLAG00000005105	upf3b	93	49.773	ENSAMEG00000004259	UPF3A	90	41.080	Ailuropoda_melanoleuca
ENSPLAG00000005105	upf3b	100	74.353	ENSACIG00000013582	upf3b	100	75.431	Amphilophus_citrinellus
ENSPLAG00000005105	upf3b	100	79.913	ENSAOCG00000000706	upf3b	100	79.258	Amphiprion_ocellaris
ENSPLAG00000005105	upf3b	100	81.223	ENSAPEG00000005545	upf3b	100	80.786	Amphiprion_percula
ENSPLAG00000005105	upf3b	100	79.526	ENSATEG00000018742	upf3b	100	80.172	Anabas_testudineus
ENSPLAG00000005105	upf3b	91	47.796	ENSACAG00000001540	UPF3A	98	42.518	Anolis_carolinensis
ENSPLAG00000005105	upf3b	99	55.864	ENSACAG00000003625	UPF3B	94	59.050	Anolis_carolinensis
ENSPLAG00000005105	upf3b	96	53.664	ENSANAG00000025598	-	92	59.809	Aotus_nancymaae
ENSPLAG00000005105	upf3b	96	57.019	ENSANAG00000021894	-	97	66.507	Aotus_nancymaae
ENSPLAG00000005105	upf3b	100	79.565	ENSACLG00000001649	upf3b	100	78.913	Astatotilapia_calliptera
ENSPLAG00000005105	upf3b	68	77.985	ENSAMXG00000000199	upf3b	91	81.818	Astyanax_mexicanus
ENSPLAG00000005105	upf3b	59	65.371	ENSBTAG00000035615	UPF3B	91	66.986	Bos_taurus
ENSPLAG00000005105	upf3b	96	56.833	ENSCJAG00000004975	UPF3B	97	66.029	Callithrix_jacchus
ENSPLAG00000005105	upf3b	96	55.338	ENSCAFG00000018426	UPF3B	98	54.626	Canis_familiaris
ENSPLAG00000005105	upf3b	96	53.377	ENSCAFG00020004074	UPF3B	96	52.423	Canis_lupus_dingo
ENSPLAG00000005105	upf3b	96	55.462	ENSCHIG00000000247	-	96	54.604	Capra_hircus
ENSPLAG00000005105	upf3b	96	55.252	ENSCHIG00000018011	-	91	66.507	Capra_hircus
ENSPLAG00000005105	upf3b	96	55.098	ENSTSYG00000014690	UPF3B	96	61.860	Carlito_syrichta
ENSPLAG00000005105	upf3b	59	49.434	ENSCCAG00000021964	-	86	45.596	Cebus_capucinus
ENSPLAG00000005105	upf3b	93	39.002	ENSCCAG00000029813	-	69	53.695	Cebus_capucinus
ENSPLAG00000005105	upf3b	96	56.616	ENSCATG00000017506	UPF3B	97	66.507	Cercocebus_atys
ENSPLAG00000005105	upf3b	96	58.022	ENSCLAG00000003260	UPF3B	96	57.269	Chinchilla_lanigera
ENSPLAG00000005105	upf3b	96	55.063	ENSCSAG00000018348	UPF3B	96	54.604	Chlorocebus_sabaeus
ENSPLAG00000005105	upf3b	94	58.730	ENSCPBG00000020685	UPF3B	99	56.009	Chrysemys_picta_bellii
ENSPLAG00000005105	upf3b	59	65.125	ENSCANG00000029220	UPF3B	88	66.986	Colobus_angolensis_palliatus
ENSPLAG00000005105	upf3b	94	54.967	ENSCGRG00001006858	-	94	53.812	Cricetulus_griseus_chok1gshd
ENSPLAG00000005105	upf3b	75	54.494	ENSCGRG00001013643	-	92	53.509	Cricetulus_griseus_chok1gshd
ENSPLAG00000005105	upf3b	86	58.250	ENSCGRG00000007627	Upf3b	95	55.224	Cricetulus_griseus_crigri
ENSPLAG00000005105	upf3b	99	74.895	ENSCSEG00000002046	upf3b	99	75.732	Cynoglossus_semilaevis
ENSPLAG00000005105	upf3b	93	50.340	ENSCSEG00000005106	upf3a	85	44.470	Cynoglossus_semilaevis
ENSPLAG00000005105	upf3b	100	90.132	ENSCVAG00000005030	upf3b	100	90.132	Cyprinodon_variegatus
ENSPLAG00000005105	upf3b	88	50.488	ENSDARG00000069297	upf3a	51	56.356	Danio_rerio
ENSPLAG00000005105	upf3b	94	71.167	ENSDARG00000000489	upf3b	97	69.147	Danio_rerio
ENSPLAG00000005105	upf3b	94	55.603	ENSDNOG00000008665	UPF3B	96	54.176	Dasypus_novemcinctus
ENSPLAG00000005105	upf3b	96	56.923	ENSDORG00000006077	Upf3b	94	55.631	Dipodomys_ordii
ENSPLAG00000005105	upf3b	96	55.531	ENSEASG00005012919	UPF3B	96	50.000	Equus_asinus_asinus
ENSPLAG00000005105	upf3b	96	55.531	ENSECAG00000016947	UPF3B	96	50.000	Equus_caballus
ENSPLAG00000005105	upf3b	99	63.843	ENSELUG00000020389	upf3b	100	66.804	Esox_lucius
ENSPLAG00000005105	upf3b	89	50.948	ENSELUG00000011050	upf3a	83	45.297	Esox_lucius
ENSPLAG00000005105	upf3b	96	55.579	ENSFCAG00000004388	UPF3B	96	56.018	Felis_catus
ENSPLAG00000005105	upf3b	96	48.444	ENSFCAG00000014602	UPF3A	86	41.339	Felis_catus
ENSPLAG00000005105	upf3b	94	49.263	ENSFALG00000001569	UPF3B	94	48.837	Ficedula_albicollis
ENSPLAG00000005105	upf3b	96	57.701	ENSFDAG00000018869	UPF3B	96	56.828	Fukomys_damarensis
ENSPLAG00000005105	upf3b	100	88.043	ENSFHEG00000017895	upf3b	100	85.870	Fundulus_heteroclitus
ENSPLAG00000005105	upf3b	100	65.605	ENSGMOG00000001621	upf3b	100	66.454	Gadus_morhua
ENSPLAG00000005105	upf3b	94	57.743	ENSGALG00000008618	UPF3B	94	57.965	Gallus_gallus
ENSPLAG00000005105	upf3b	100	97.351	ENSGAFG00000000829	upf3b	100	97.351	Gambusia_affinis
ENSPLAG00000005105	upf3b	100	74.298	ENSGACG00000017435	upf3b	97	84.528	Gasterosteus_aculeatus
ENSPLAG00000005105	upf3b	94	62.896	ENSGAGG00000001219	UPF3B	99	59.227	Gopherus_agassizii
ENSPLAG00000005105	upf3b	96	56.616	ENSGGOG00000023995	UPF3B	88	66.986	Gorilla_gorilla
ENSPLAG00000005105	upf3b	100	79.565	ENSHBUG00000017393	upf3b	100	78.913	Haplochromis_burtoni
ENSPLAG00000005105	upf3b	70	57.612	ENSHGLG00000011189	-	91	50.386	Heterocephalus_glaber_female
ENSPLAG00000005105	upf3b	96	57.050	ENSHGLG00000019582	-	96	56.167	Heterocephalus_glaber_female
ENSPLAG00000005105	upf3b	96	55.385	ENSHGLG00100002042	-	96	53.524	Heterocephalus_glaber_male
ENSPLAG00000005105	upf3b	75	52.661	ENSHGLG00100001889	-	81	54.706	Heterocephalus_glaber_male
ENSPLAG00000005105	upf3b	100	70.513	ENSHCOG00000017004	upf3b	100	70.323	Hippocampus_comes
ENSPLAG00000005105	upf3b	86	84.615	ENSIPUG00000019249	upf3b	100	69.742	Ictalurus_punctatus
ENSPLAG00000005105	upf3b	96	56.923	ENSSTOG00000001101	UPF3B	96	55.947	Ictidomys_tridecemlineatus
ENSPLAG00000005105	upf3b	94	57.174	ENSJJAG00000000053	Upf3b	96	54.267	Jaculus_jaculus
ENSPLAG00000005105	upf3b	100	84.245	ENSKMAG00000020300	upf3b	100	82.932	Kryptolebias_marmoratus
ENSPLAG00000005105	upf3b	61	86.957	ENSLBEG00000028689	upf3b	59	86.667	Labrus_bergylta
ENSPLAG00000005105	upf3b	100	59.873	ENSLACG00000008691	UPF3B	100	58.491	Latimeria_chalumnae
ENSPLAG00000005105	upf3b	93	52.656	ENSLOCG00000002665	upf3a	50	59.072	Lepisosteus_oculatus
ENSPLAG00000005105	upf3b	100	64.035	ENSLOCG00000015238	upf3b	100	69.432	Lepisosteus_oculatus
ENSPLAG00000005105	upf3b	96	56.616	ENSLAFG00000001267	UPF3B	96	56.167	Loxodonta_africana
ENSPLAG00000005105	upf3b	96	56.399	ENSMFAG00000045414	UPF3B	97	66.507	Macaca_fascicularis
ENSPLAG00000005105	upf3b	96	56.399	ENSMMUG00000020222	UPF3B	97	66.507	Macaca_mulatta
ENSPLAG00000005105	upf3b	96	56.399	ENSMNEG00000039794	UPF3B	97	66.507	Macaca_nemestrina
ENSPLAG00000005105	upf3b	96	56.616	ENSMLEG00000010999	UPF3B	97	66.507	Mandrillus_leucophaeus
ENSPLAG00000005105	upf3b	91	82.292	ENSMAMG00000020069	upf3b	85	94.301	Mastacembelus_armatus
ENSPLAG00000005105	upf3b	100	79.565	ENSMZEG00005007871	upf3b	100	78.913	Maylandia_zebra
ENSPLAG00000005105	upf3b	87	48.293	ENSMGAG00000014837	UPF3A	97	40.750	Meleagris_gallopavo
ENSPLAG00000005105	upf3b	78	59.003	ENSMGAG00000007728	UPF3B	92	59.280	Meleagris_gallopavo
ENSPLAG00000005105	upf3b	94	54.586	ENSMAUG00000008705	Upf3b	94	52.691	Mesocricetus_auratus
ENSPLAG00000005105	upf3b	59	65.724	ENSMICG00000001743	UPF3B	88	66.986	Microcebus_murinus
ENSPLAG00000005105	upf3b	97	52.754	ENSMOCG00000017893	Upf3b	96	52.463	Microtus_ochrogaster
ENSPLAG00000005105	upf3b	100	77.243	ENSMMOG00000004183	upf3b	100	77.681	Mola_mola
ENSPLAG00000005105	upf3b	91	60.952	ENSMODG00000010232	UPF3B	97	57.757	Monodelphis_domestica
ENSPLAG00000005105	upf3b	100	77.897	ENSMALG00000008042	upf3b	100	77.682	Monopterus_albus
ENSPLAG00000005105	upf3b	94	55.507	MGP_CAROLIEiJ_G0032999	Upf3b	94	53.587	Mus_caroli
ENSPLAG00000005105	upf3b	94	55.727	ENSMUSG00000036572	Upf3b	94	53.812	Mus_musculus
ENSPLAG00000005105	upf3b	94	56.167	MGP_PahariEiJ_G0031543	Upf3b	94	54.260	Mus_pahari
ENSPLAG00000005105	upf3b	94	55.727	MGP_SPRETEiJ_G0034152	Upf3b	94	53.812	Mus_spretus
ENSPLAG00000005105	upf3b	96	57.549	ENSMPUG00000001531	UPF3B	98	54.626	Mustela_putorius_furo
ENSPLAG00000005105	upf3b	91	44.262	ENSMLUG00000015905	UPF3A	98	43.119	Myotis_lucifugus
ENSPLAG00000005105	upf3b	96	57.759	ENSMLUG00000010821	UPF3B	96	56.923	Myotis_lucifugus
ENSPLAG00000005105	upf3b	94	55.947	ENSNGAG00000008231	Upf3b	94	53.812	Nannospalax_galili
ENSPLAG00000005105	upf3b	88	46.699	ENSNLEG00000007563	UPF3A	82	41.337	Nomascus_leucogenys
ENSPLAG00000005105	upf3b	92	58.629	ENSNLEG00000014897	UPF3B	86	58.272	Nomascus_leucogenys
ENSPLAG00000005105	upf3b	96	56.044	ENSODEG00000002186	-	96	54.846	Octodon_degus
ENSPLAG00000005105	upf3b	100	80.215	ENSONIG00000002536	upf3b	100	80.430	Oreochromis_niloticus
ENSPLAG00000005105	upf3b	89	56.325	ENSOANG00000002594	-	97	55.344	Ornithorhynchus_anatinus
ENSPLAG00000005105	upf3b	97	54.603	ENSOCUG00000010213	UPF3B	96	54.390	Oryctolagus_cuniculus
ENSPLAG00000005105	upf3b	100	77.511	ENSORLG00000001026	upf3b	100	76.856	Oryzias_latipes
ENSPLAG00000005105	upf3b	100	77.074	ENSORLG00020003758	upf3b	100	77.519	Oryzias_latipes_hni
ENSPLAG00000005105	upf3b	92	49.433	ENSORLG00020014317	upf3a	56	63.469	Oryzias_latipes_hni
ENSPLAG00000005105	upf3b	100	76.856	ENSORLG00015012954	upf3b	100	76.201	Oryzias_latipes_hsok
ENSPLAG00000005105	upf3b	100	77.074	ENSOMEG00000014736	upf3b	100	76.419	Oryzias_melastigma
ENSPLAG00000005105	upf3b	92	50.459	ENSOMEG00000014425	upf3a	82	45.209	Oryzias_melastigma
ENSPLAG00000005105	upf3b	96	56.616	ENSOGAG00000004643	-	96	55.947	Otolemur_garnettii
ENSPLAG00000005105	upf3b	99	53.797	ENSOGAG00000033003	-	98	54.902	Otolemur_garnettii
ENSPLAG00000005105	upf3b	96	55.115	ENSOARG00000016051	-	96	54.255	Ovis_aries
ENSPLAG00000005105	upf3b	90	46.324	ENSOARG00000007869	-	94	44.039	Ovis_aries
ENSPLAG00000005105	upf3b	96	56.616	ENSPPAG00000040390	UPF3B	88	66.986	Pan_paniscus
ENSPLAG00000005105	upf3b	88	48.786	ENSPPAG00000042267	UPF3A	82	41.832	Pan_paniscus
ENSPLAG00000005105	upf3b	96	57.328	ENSPPRG00000023536	UPF3B	96	56.264	Panthera_pardus
ENSPLAG00000005105	upf3b	96	48.444	ENSPPRG00000025062	UPF3A	89	41.071	Panthera_pardus
ENSPLAG00000005105	upf3b	96	53.236	ENSPTIG00000015264	UPF3B	88	66.029	Panthera_tigris_altaica
ENSPLAG00000005105	upf3b	96	56.616	ENSPTRG00000022228	UPF3B	88	66.986	Pan_troglodytes
ENSPLAG00000005105	upf3b	88	48.786	ENSPTRG00000006073	UPF3A	82	41.832	Pan_troglodytes
ENSPLAG00000005105	upf3b	86	39.744	ENSPTRG00000051640	-	86	35.516	Pan_troglodytes
ENSPLAG00000005105	upf3b	96	56.616	ENSPANG00000000900	UPF3B	97	66.507	Papio_anubis
ENSPLAG00000005105	upf3b	99	67.245	ENSPKIG00000019226	upf3b	93	84.028	Paramormyrops_kingsleyae
ENSPLAG00000005105	upf3b	87	50.000	ENSPSIG00000007468	UPF3A	99	41.981	Pelodiscus_sinensis
ENSPLAG00000005105	upf3b	57	65.152	ENSPSIG00000005833	UPF3B	88	65.737	Pelodiscus_sinensis
ENSPLAG00000005105	upf3b	58	87.160	ENSPMGG00000016067	upf3b	95	85.932	Periophthalmus_magnuspinnatus
ENSPLAG00000005105	upf3b	100	53.958	ENSPEMG00000012352	Upf3b	94	54.139	Peromyscus_maniculatus_bairdii
ENSPLAG00000005105	upf3b	78	54.419	ENSPCIG00000019590	-	63	66.667	Phascolarctos_cinereus
ENSPLAG00000005105	upf3b	93	58.140	ENSPCIG00000028914	UPF3B	87	54.785	Phascolarctos_cinereus
ENSPLAG00000005105	upf3b	91	40.950	ENSPFOG00000013222	upf3a	50	57.806	Poecilia_formosa
ENSPLAG00000005105	upf3b	100	99.558	ENSPMEG00000023532	upf3b	100	99.558	Poecilia_mexicana
ENSPLAG00000005105	upf3b	59	65.818	ENSPPYG00000020675	-	63	66.507	Pongo_abelii
ENSPLAG00000005105	upf3b	98	54.298	ENSPCAG00000009464	UPF3B	98	53.138	Procavia_capensis
ENSPLAG00000005105	upf3b	96	57.330	ENSPCOG00000021960	UPF3B	84	66.986	Propithecus_coquereli
ENSPLAG00000005105	upf3b	96	47.021	ENSPVAG00000014075	UPF3B	96	45.824	Pteropus_vampyrus
ENSPLAG00000005105	upf3b	100	80.131	ENSPNYG00000009846	upf3b	100	79.913	Pundamilia_nyererei
ENSPLAG00000005105	upf3b	99	71.520	ENSPNAG00000021528	upf3b	94	84.536	Pygocentrus_nattereri
ENSPLAG00000005105	upf3b	66	83.871	ENSRNOG00000039994	Upf3b	94	53.812	Rattus_norvegicus
ENSPLAG00000005105	upf3b	81	56.417	ENSRBIG00000037219	UPF3B	95	56.676	Rhinopithecus_bieti
ENSPLAG00000005105	upf3b	96	56.616	ENSRROG00000041031	UPF3B	97	66.507	Rhinopithecus_roxellana
ENSPLAG00000005105	upf3b	87	47.643	ENSRROG00000012212	UPF3A	81	42.643	Rhinopithecus_roxellana
ENSPLAG00000005105	upf3b	96	57.424	ENSSBOG00000019740	UPF3B	99	65.072	Saimiri_boliviensis_boliviensis
ENSPLAG00000005105	upf3b	98	56.780	ENSSHAG00000008634	UPF3B	98	54.352	Sarcophilus_harrisii
ENSPLAG00000005105	upf3b	99	69.584	ENSSFOG00015005614	upf3b	100	69.432	Scleropages_formosus
ENSPLAG00000005105	upf3b	100	76.445	ENSSMAG00000012913	upf3b	100	90.272	Scophthalmus_maximus
ENSPLAG00000005105	upf3b	62	71.951	ENSSDUG00000009680	upf3a	55	76.404	Seriola_dumerili
ENSPLAG00000005105	upf3b	100	79.221	ENSSDUG00000005682	upf3b	100	79.221	Seriola_dumerili
ENSPLAG00000005105	upf3b	100	80.519	ENSSLDG00000003130	upf3b	100	79.004	Seriola_lalandi_dorsalis
ENSPLAG00000005105	upf3b	86	37.406	ENSSARG00000007262	UPF3A	92	34.264	Sorex_araneus
ENSPLAG00000005105	upf3b	86	56.716	ENSSARG00000004147	UPF3B	97	56.368	Sorex_araneus
ENSPLAG00000005105	upf3b	98	56.432	ENSSPUG00000013082	UPF3B	99	55.394	Sphenodon_punctatus
ENSPLAG00000005105	upf3b	99	81.538	ENSSPAG00000009989	upf3b	99	81.538	Stegastes_partitus
ENSPLAG00000005105	upf3b	91	48.810	ENSSPAG00000007938	upf3a	72	71.338	Stegastes_partitus
ENSPLAG00000005105	upf3b	97	56.959	ENSSSCG00000012617	UPF3B	96	56.167	Sus_scrofa
ENSPLAG00000005105	upf3b	90	59.903	ENSTGUG00000003413	UPF3B	93	60.804	Taeniopygia_guttata
ENSPLAG00000005105	upf3b	87	52.088	ENSTGUG00000009493	UPF3A	98	43.073	Taeniopygia_guttata
ENSPLAG00000005105	upf3b	100	75.109	ENSTRUG00000010645	upf3b	100	72.707	Takifugu_rubripes
ENSPLAG00000005105	upf3b	89	50.121	ENSTRUG00000012730	upf3a	50	63.900	Takifugu_rubripes
ENSPLAG00000005105	upf3b	99	66.739	ENSTNIG00000015763	upf3b	100	63.203	Tetraodon_nigroviridis
ENSPLAG00000005105	upf3b	94	47.516	ENSTBEG00000003229	UPF3B	93	47.912	Tupaia_belangeri
ENSPLAG00000005105	upf3b	96	54.644	ENSUAMG00000024565	UPF3B	96	54.286	Ursus_americanus
ENSPLAG00000005105	upf3b	89	54.479	ENSUMAG00000002150	UPF3B	87	54.680	Ursus_maritimus
ENSPLAG00000005105	upf3b	84	56.500	ENSVPAG00000009971	UPF3B	95	55.980	Vicugna_pacos
ENSPLAG00000005105	upf3b	96	53.159	ENSVVUG00000011594	UPF3B	97	66.507	Vulpes_vulpes
ENSPLAG00000005105	upf3b	94	56.364	ENSXETG00000007440	upf3b	84	76.289	Xenopus_tropicalis
ENSPLAG00000005105	upf3b	100	93.424	ENSXCOG00000016586	upf3b	98	97.449	Xiphophorus_couchianus
ENSPLAG00000005105	upf3b	60	70.667	ENSXMAG00000013452	upf3a	85	44.526	Xiphophorus_maculatus
ENSPLAG00000005105	upf3b	100	96.468	ENSXMAG00000013680	upf3b	100	96.468	Xiphophorus_maculatus