EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSPLAG00000005161 (Gene tree)
Gene ID: -
Gene Symbol: -
Alias: -
Full Name: RNA-binding motif%2C single-stranded-interacting protein 3-like
Gene Type: protein_coding
Species: Poecilia_latipinna
Status: putative
Strand: Minus strand
Length: 97084 bases
Position: chrKQ546817.1:65492-162575
Accession: 106963197
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPLAP00000021426	RRM_1	PF00076.22	3.6e-17	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPLAT00000011012	-	495	XM_015057977	ENSPLAP00000021426	164 (aa)	XP_014913463	-

Gene Model

Click here to download ENSPLAG00000005161's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPLAG00000005161's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSPLAG00000005161	-	59	85.149	ENSPLAG00000002862	-	52	93.976
ENSPLAG00000005161	-	65	33.871	ENSPLAG00000001547	elavl3	61	37.647
ENSPLAG00000005161	-	56	38.947	ENSPLAG00000005203	ELAVL2	62	38.462

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPLAG00000005161	-	77	87.121	ENSG00000144642	RBMS3	50	77.444	Homo_sapiens
ENSPLAG00000005161	-	77	89.844	ENSAMXG00000043770	-	69	89.062	Astyanax_mexicanus
ENSPLAG00000005161	-	83	84.397	ENSCAFG00020024980	RBMS3	95	84.397	Canis_lupus_dingo
ENSPLAG00000005161	-	77	99.219	ENSCSEG00000014677	-	50	99.219	Cynoglossus_semilaevis
ENSPLAG00000005161	-	77	100.000	ENSCVAG00000022814	-	78	100.000	Cyprinodon_variegatus
ENSPLAG00000005161	-	77	92.969	ENSDARG00000044574	rbms3	60	93.103	Danio_rerio
ENSPLAG00000005161	-	77	97.656	ENSELUG00000006905	-	51	97.656	Esox_lucius
ENSPLAG00000005161	-	82	97.761	ENSFHEG00000016746	-	99	97.761	Fundulus_heteroclitus
ENSPLAG00000005161	-	59	88.119	ENSGAGG00000023515	-	61	88.119	Gopherus_agassizii
ENSPLAG00000005161	-	77	86.614	MGP_CAROLIEiJ_G0032783	Rbms3	62	86.614	Mus_caroli
ENSPLAG00000005161	-	77	88.976	ENSMUSG00000039607	Rbms3	62	88.976	Mus_musculus
ENSPLAG00000005161	-	77	88.976	MGP_PahariEiJ_G0015650	Rbms3	62	88.976	Mus_pahari
ENSPLAG00000005161	-	77	88.976	MGP_SPRETEiJ_G0033930	Rbms3	62	88.976	Mus_spretus
ENSPLAG00000005161	-	77	78.947	ENSORLG00020022674	RBMS3	54	78.947	Oryzias_latipes_hni
ENSPLAG00000005161	-	77	79.699	ENSORLG00015005509	rbms3	54	79.699	Oryzias_latipes_hsok
ENSPLAG00000005161	-	77	76.866	ENSPCIG00000006106	RBMS3	56	85.075	Phascolarctos_cinereus
ENSPLAG00000005161	-	68	75.833	ENSPMEG00000013853	-	78	82.828	Poecilia_mexicana