EuRBPDB

  • Home
  • Cancer
  • Family
  • Species
  • RBPredictor
  • Search
  • Download
  • Submit
  • Help
  • Contact

  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • PPI
  • Orthologs
Description
Ensembl ID
ENSPLAG00000005715 (Gene tree)
Gene ID
106943742
Gene Symbol
cpsf6
Alias
-
Full Name
cleavage and polyadenylation specific factor 6
Gene Type
protein_coding
Species
Poecilia_latipinna
Status
putative
Strand
Minus strand
Length
14574 bases
Position
chrKQ545415.1:274314-288887
Accession
106943742
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSPLAP00000004054RRM_1PF00076.223e-0711
ENSPLAP00000021712RRM_1PF00076.223.4e-0711
ENSPLAP00000004072RRM_1PF00076.223.8e-0711
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSPLAT00000010295-1536-ENSPLAP00000004054511 (aa)--
ENSPLAT00000010275-4479XM_015027061ENSPLAP00000021712550 (aa)XP_014882547UPI00072E1824
ENSPLAT00000010267-4587XM_015027048ENSPLAP00000004072586 (aa)XP_014882534UPI00072D9B65
Gene Model
Click here to download ENSPLAG00000005715's gene model file
Protein-Protein Interaction (PPI)

Clik here to download ENSPLAG00000005715's network
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSPLAG00000005715cpsf67074.684ENSG00000149532CPSF710050.000Homo_sapiens
ENSPLAG00000005715cpsf69481.369ENSG00000111605CPSF69479.350Homo_sapiens
ENSPLAG00000005715cpsf67053.333ENSAMEG00000016595CPSF76450.532Ailuropoda_melanoleuca
ENSPLAG00000005715cpsf65278.947ENSAMEG00000011781CPSF67784.483Ailuropoda_melanoleuca
ENSPLAG00000005715cpsf66438.690ENSAOCG00000012357CPSF76742.500Amphiprion_ocellaris
ENSPLAG00000005715cpsf69493.449ENSAOCG00000017865cpsf69493.449Amphiprion_ocellaris
ENSPLAG00000005715cpsf66439.286ENSAPEG00000015375CPSF76741.875Amphiprion_percula
ENSPLAG00000005715cpsf65278.169ENSACAG00000004381CPSF65377.778Anolis_carolinensis
ENSPLAG00000005715cpsf69180.906ENSANAG00000019240CPSF69378.812Aotus_nancymaae
ENSPLAG00000005715cpsf69441.352ENSANAG00000024635CPSF76946.073Aotus_nancymaae
ENSPLAG00000005715cpsf69592.252ENSACLG00000026325cpsf67694.828Astatotilapia_calliptera
ENSPLAG00000005715cpsf69579.846ENSAMXG00000016745CPSF68790.361Astyanax_mexicanus
ENSPLAG00000005715cpsf69481.369ENSBTAG00000007323CPSF69479.350Bos_taurus
ENSPLAG00000005715cpsf69544.752ENSBTAG00000015263CPSF77150.811Bos_taurus
ENSPLAG00000005715cpsf69481.369ENSCJAG00000001798CPSF69479.350Callithrix_jacchus
ENSPLAG00000005715cpsf69544.554ENSCJAG00000019282CPSF78055.696Callithrix_jacchus
ENSPLAG00000005715cpsf69180.747ENSCAFG00000000424CPSF69278.656Canis_familiaris
ENSPLAG00000005715cpsf69544.752ENSCAFG00000016152CPSF77151.351Canis_familiaris
ENSPLAG00000005715cpsf69544.752ENSCAFG00020012753CPSF77151.351Canis_lupus_dingo
ENSPLAG00000005715cpsf69481.369ENSCAFG00020016950CPSF69479.350Canis_lupus_dingo
ENSPLAG00000005715cpsf69544.752ENSCHIG00000014655CPSF77150.811Capra_hircus
ENSPLAG00000005715cpsf69481.369ENSCHIG00000010792CPSF69479.350Capra_hircus
ENSPLAG00000005715cpsf69544.752ENSTSYG00000010138-7151.351Carlito_syrichta
ENSPLAG00000005715cpsf69181.028ENSTSYG00000008591CPSF69178.926Carlito_syrichta
ENSPLAG00000005715cpsf65459.589ENSCAPG00000006384CPSF77051.351Cavia_aperea
ENSPLAG00000005715cpsf68745.714ENSCPOG00000009980CPSF77151.351Cavia_porcellus
ENSPLAG00000005715cpsf65278.873ENSCPOG00000015201CPSF66185.542Cavia_porcellus
ENSPLAG00000005715cpsf69481.369ENSCCAG00000028149CPSF69479.350Cebus_capucinus
ENSPLAG00000005715cpsf69544.554ENSCCAG00000032367CPSF77150.811Cebus_capucinus
ENSPLAG00000005715cpsf69544.554ENSCATG00000042801CPSF77350.811Cercocebus_atys
ENSPLAG00000005715cpsf69481.369ENSCATG00000039288CPSF69479.350Cercocebus_atys
ENSPLAG00000005715cpsf65759.589ENSCLAG00000003174CPSF77150.811Chinchilla_lanigera
ENSPLAG00000005715cpsf69180.830ENSCLAG00000010149CPSF69478.728Chinchilla_lanigera
ENSPLAG00000005715cpsf69543.625ENSCSAG00000006414CPSF77350.811Chlorocebus_sabaeus
ENSPLAG00000005715cpsf69481.453ENSCPBG00000013322CPSF69479.350Chrysemys_picta_bellii
ENSPLAG00000005715cpsf69181.028ENSCANG00000037294CPSF69478.926Colobus_angolensis_palliatus
ENSPLAG00000005715cpsf69544.752ENSCGRG00001020382Cpsf77153.804Cricetulus_griseus_chok1gshd
ENSPLAG00000005715cpsf65278.873ENSCGRG00001018082Cpsf67883.908Cricetulus_griseus_chok1gshd
ENSPLAG00000005715cpsf65075.090ENSCGRG00000016909Cpsf67783.203Cricetulus_griseus_crigri
ENSPLAG00000005715cpsf69545.149ENSCGRG00000017954Cpsf77353.804Cricetulus_griseus_crigri
ENSPLAG00000005715cpsf67132.055ENSCSEG00000001956CPSF75744.366Cynoglossus_semilaevis
ENSPLAG00000005715cpsf69492.293ENSCSEG00000008967cpsf69492.293Cynoglossus_semilaevis
ENSPLAG00000005715cpsf66239.153ENSCVAG00000007392CPSF76643.836Cyprinodon_variegatus
ENSPLAG00000005715cpsf610096.587ENSCVAG00000014857cpsf610096.587Cyprinodon_variegatus
ENSPLAG00000005715cpsf65283.446ENSDARG00000018618cpsf67791.954Danio_rerio
ENSPLAG00000005715cpsf69544.752ENSDNOG00000018517CPSF78056.329Dasypus_novemcinctus
ENSPLAG00000005715cpsf65279.225ENSDNOG00000015292CPSF65278.819Dasypus_novemcinctus
ENSPLAG00000005715cpsf68740.000FBgn0035872CG71855446.897Drosophila_melanogaster
ENSPLAG00000005715cpsf69543.366ENSETEG00000003765CPSF77055.556Echinops_telfairi
ENSPLAG00000005715cpsf66782.857ENSETEG00000002097CPSF67382.857Echinops_telfairi
ENSPLAG00000005715cpsf69455.577ENSEBUG00000003540cpsf66777.381Eptatretus_burgeri
ENSPLAG00000005715cpsf68745.852ENSEASG00005008196CPSF77151.351Equus_asinus_asinus
ENSPLAG00000005715cpsf69481.369ENSEASG00005008066CPSF69479.350Equus_asinus_asinus
ENSPLAG00000005715cpsf67075.949ENSECAG00000018521CPSF78256.329Equus_caballus
ENSPLAG00000005715cpsf69481.369ENSECAG00000015988CPSF69479.350Equus_caballus
ENSPLAG00000005715cpsf65361.345ENSEEUG00000005966-6761.017Erinaceus_europaeus
ENSPLAG00000005715cpsf69544.752ENSFCAG00000013677CPSF78256.329Felis_catus
ENSPLAG00000005715cpsf69481.369ENSFCAG00000002855CPSF69479.350Felis_catus
ENSPLAG00000005715cpsf69540.275ENSFALG00000011927CPSF77656.667Ficedula_albicollis
ENSPLAG00000005715cpsf69544.752ENSFDAG00000003919CPSF77151.351Fukomys_damarensis
ENSPLAG00000005715cpsf69479.008ENSFDAG00000002281CPSF69476.967Fukomys_damarensis
ENSPLAG00000005715cpsf610093.333ENSFHEG00000019693cpsf610093.333Fundulus_heteroclitus
ENSPLAG00000005715cpsf65894.798ENSGMOG00000012951cpsf65395.000Gadus_morhua
ENSPLAG00000005715cpsf69543.254ENSGALG00000040962CPSF76356.250Gallus_gallus
ENSPLAG00000005715cpsf69481.453ENSGAGG00000010228CPSF69479.350Gopherus_agassizii
ENSPLAG00000005715cpsf65278.873ENSGGOG00000008211CPSF67883.908Gorilla_gorilla
ENSPLAG00000005715cpsf69592.432ENSHBUG00000005998cpsf69493.064Haplochromis_burtoni
ENSPLAG00000005715cpsf66259.864ENSHGLG00000019090-7351.351Heterocephalus_glaber_female
ENSPLAG00000005715cpsf65278.873ENSHGLG00000000792CPSF66185.542Heterocephalus_glaber_female
ENSPLAG00000005715cpsf69541.843ENSHGLG00100013933-7351.351Heterocephalus_glaber_male
ENSPLAG00000005715cpsf69478.857ENSHGLG00100013861CPSF69478.728Heterocephalus_glaber_male
ENSPLAG00000005715cpsf69584.643ENSHCOG00000014555cpsf69586.607Hippocampus_comes
ENSPLAG00000005715cpsf69181.028ENSSTOG00000014133CPSF69478.926Ictidomys_tridecemlineatus
ENSPLAG00000005715cpsf69544.752ENSSTOG00000007708CPSF77151.351Ictidomys_tridecemlineatus
ENSPLAG00000005715cpsf69543.625ENSJJAG00000019390Cpsf77351.351Jaculus_jaculus
ENSPLAG00000005715cpsf65596.262ENSKMAG00000014794cpsf69494.798Kryptolebias_marmoratus
ENSPLAG00000005715cpsf69586.501ENSLBEG00000015762cpsf69590.409Labrus_bergylta
ENSPLAG00000005715cpsf66240.667ENSLBEG00000000947CPSF77539.130Labrus_bergylta
ENSPLAG00000005715cpsf69234.827ENSLACG00000005542CPSF75845.638Latimeria_chalumnae
ENSPLAG00000005715cpsf65281.338ENSLACG00000008625CPSF65277.431Latimeria_chalumnae
ENSPLAG00000005715cpsf66789.655ENSLOCG00000016190cpsf66687.615Lepisosteus_oculatus
ENSPLAG00000005715cpsf69544.950ENSLAFG00000032084CPSF77151.351Loxodonta_africana
ENSPLAG00000005715cpsf69481.369ENSLAFG00000030413CPSF69479.350Loxodonta_africana
ENSPLAG00000005715cpsf69481.369ENSMFAG00000045318CPSF69479.350Macaca_fascicularis
ENSPLAG00000005715cpsf69544.554ENSMFAG00000001401CPSF77150.811Macaca_fascicularis
ENSPLAG00000005715cpsf69544.554ENSMMUG00000015280CPSF77350.811Macaca_mulatta
ENSPLAG00000005715cpsf65278.873ENSMMUG00000002921CPSF67883.908Macaca_mulatta
ENSPLAG00000005715cpsf69481.369ENSMNEG00000036311CPSF69479.350Macaca_nemestrina
ENSPLAG00000005715cpsf69543.625ENSMNEG00000029585CPSF77350.811Macaca_nemestrina
ENSPLAG00000005715cpsf69544.554ENSMLEG00000031269CPSF76950.811Mandrillus_leucophaeus
ENSPLAG00000005715cpsf69181.028ENSMLEG00000003957CPSF69478.926Mandrillus_leucophaeus
ENSPLAG00000005715cpsf69587.027ENSMAMG00000010385cpsf69492.293Mastacembelus_armatus
ENSPLAG00000005715cpsf69592.432ENSMZEG00005007975cpsf69493.064Maylandia_zebra
ENSPLAG00000005715cpsf69542.602ENSMGAG00000004876CPSF76258.480Meleagris_gallopavo
ENSPLAG00000005715cpsf65174.733ENSMGAG00000010552CPSF66584.916Meleagris_gallopavo
ENSPLAG00000005715cpsf69544.554ENSMAUG00000013020Cpsf77151.351Mesocricetus_auratus
ENSPLAG00000005715cpsf69481.369ENSMAUG00000013240Cpsf69479.350Mesocricetus_auratus
ENSPLAG00000005715cpsf69544.752ENSMICG00000013788CPSF77151.351Microcebus_murinus
ENSPLAG00000005715cpsf65278.873ENSMICG00000007385-7883.908Microcebus_murinus
ENSPLAG00000005715cpsf65278.873ENSMOCG00000013982Cpsf67883.908Microtus_ochrogaster
ENSPLAG00000005715cpsf69544.554ENSMOCG00000000072Cpsf77151.351Microtus_ochrogaster
ENSPLAG00000005715cpsf69481.179ENSMODG00000007123CPSF69479.159Monodelphis_domestica
ENSPLAG00000005715cpsf66551.961ENSMODG00000020364CPSF77251.295Monodelphis_domestica
ENSPLAG00000005715cpsf67592.746ENSMALG00000014908cpsf67692.727Monopterus_albus
ENSPLAG00000005715cpsf69481.369MGP_CAROLIEiJ_G0015834Cpsf69479.350Mus_caroli
ENSPLAG00000005715cpsf69544.554MGP_CAROLIEiJ_G0022690Cpsf77151.351Mus_caroli
ENSPLAG00000005715cpsf69544.554ENSMUSG00000034820Cpsf77151.351Mus_musculus
ENSPLAG00000005715cpsf69481.369ENSMUSG00000055531Cpsf69479.350Mus_musculus
ENSPLAG00000005715cpsf68578.873MGP_PahariEiJ_G0031253Cpsf67783.908Mus_pahari
ENSPLAG00000005715cpsf69544.554MGP_PahariEiJ_G0014184Cpsf77151.351Mus_pahari
ENSPLAG00000005715cpsf69481.369MGP_SPRETEiJ_G0016657Cpsf69479.350Mus_spretus
ENSPLAG00000005715cpsf69544.554MGP_SPRETEiJ_G0023604Cpsf77151.351Mus_spretus
ENSPLAG00000005715cpsf68344.521ENSMPUG00000014163CPSF76650.270Mustela_putorius_furo
ENSPLAG00000005715cpsf67373.913ENSMLUG00000023960-7769.417Myotis_lucifugus
ENSPLAG00000005715cpsf65174.733ENSMLUG00000004172-7778.906Myotis_lucifugus
ENSPLAG00000005715cpsf69647.938ENSMLUG00000013278CPSF77351.351Myotis_lucifugus
ENSPLAG00000005715cpsf68484.892ENSMLUG00000028728-8679.866Myotis_lucifugus
ENSPLAG00000005715cpsf69543.960ENSNGAG00000005031Cpsf77151.351Nannospalax_galili
ENSPLAG00000005715cpsf65278.873ENSNGAG00000015901Cpsf67883.908Nannospalax_galili
ENSPLAG00000005715cpsf69493.064ENSNBRG00000004089cpsf69493.064Neolamprologus_brichardi
ENSPLAG00000005715cpsf69481.369ENSNLEG00000003798CPSF69479.350Nomascus_leucogenys
ENSPLAG00000005715cpsf69544.554ENSNLEG00000002529CPSF76550.811Nomascus_leucogenys
ENSPLAG00000005715cpsf66552.261ENSMEUG00000002261CPSF77151.892Notamacropus_eugenii
ENSPLAG00000005715cpsf69543.701ENSODEG00000002610CPSF77151.064Octodon_degus
ENSPLAG00000005715cpsf65278.169ENSODEG00000018399-7882.759Octodon_degus
ENSPLAG00000005715cpsf68565.563ENSODEG00000007109-6664.780Octodon_degus
ENSPLAG00000005715cpsf69066.309ENSODEG00000004418-8184.337Octodon_degus
ENSPLAG00000005715cpsf69491.538ENSONIG00000011702cpsf69590.450Oreochromis_niloticus
ENSPLAG00000005715cpsf69168.689ENSOANG00000005944CPSF67390.984Ornithorhynchus_anatinus
ENSPLAG00000005715cpsf69544.356ENSOCUG00000024726CPSF77150.811Oryctolagus_cuniculus
ENSPLAG00000005715cpsf67135.193ENSORLG00000006495CPSF75549.123Oryzias_latipes
ENSPLAG00000005715cpsf67135.193ENSORLG00020012657CPSF75549.123Oryzias_latipes_hni
ENSPLAG00000005715cpsf69544.752ENSOGAG00000027958CPSF76651.351Otolemur_garnettii
ENSPLAG00000005715cpsf69936.535ENSOARG00000012937CPSF76451.075Ovis_aries
ENSPLAG00000005715cpsf69544.554ENSPPAG00000028232CPSF77050.811Pan_paniscus
ENSPLAG00000005715cpsf69545.149ENSPPRG00000008538CPSF77151.613Panthera_pardus
ENSPLAG00000005715cpsf69481.369ENSPPRG00000021620CPSF69479.350Panthera_pardus
ENSPLAG00000005715cpsf68580.591ENSPTIG00000004079CPSF69478.344Panthera_tigris_altaica
ENSPLAG00000005715cpsf69544.752ENSPTIG00000021699CPSF77151.351Panthera_tigris_altaica
ENSPLAG00000005715cpsf65278.873ENSPTRG00000005205CPSF67883.908Pan_troglodytes
ENSPLAG00000005715cpsf69544.554ENSPTRG00000003742CPSF77150.811Pan_troglodytes
ENSPLAG00000005715cpsf69481.369ENSPANG00000011641CPSF69479.350Papio_anubis
ENSPLAG00000005715cpsf69544.554ENSPANG00000006037CPSF76750.811Papio_anubis
ENSPLAG00000005715cpsf65284.211ENSPKIG00000003081-6287.931Paramormyrops_kingsleyae
ENSPLAG00000005715cpsf67042.077ENSPKIG00000018054CPSF76755.639Paramormyrops_kingsleyae
ENSPLAG00000005715cpsf69544.554ENSPEMG00000012648Cpsf77351.351Peromyscus_maniculatus_bairdii
ENSPLAG00000005715cpsf65042.568ENSPMAG00000008077-6849.198Petromyzon_marinus
ENSPLAG00000005715cpsf69481.179ENSPCIG00000019063CPSF69479.159Phascolarctos_cinereus
ENSPLAG00000005715cpsf65760.484ENSPCIG00000002551CPSF77066.667Phascolarctos_cinereus
ENSPLAG00000005715cpsf68999.482ENSPFOG00000006990cpsf699100.000Poecilia_formosa
ENSPLAG00000005715cpsf6100100.000ENSPMEG00000001353cpsf6100100.000Poecilia_mexicana
ENSPLAG00000005715cpsf610099.829ENSPREG00000004417cpsf610099.829Poecilia_reticulata
ENSPLAG00000005715cpsf69544.554ENSPPYG00000003188CPSF77150.811Pongo_abelii
ENSPLAG00000005715cpsf69481.369ENSPPYG00000004756CPSF69479.350Pongo_abelii
ENSPLAG00000005715cpsf69544.752ENSPCOG00000011976CPSF77151.351Propithecus_coquereli
ENSPLAG00000005715cpsf69280.460ENSPCOG00000024384CPSF67883.908Propithecus_coquereli
ENSPLAG00000005715cpsf69544.554ENSPVAG00000010675CPSF77151.351Pteropus_vampyrus
ENSPLAG00000005715cpsf69592.432ENSPNYG00000020315cpsf67695.977Pundamilia_nyererei
ENSPLAG00000005715cpsf65945.161ENSPNAG00000015073CPSF76649.640Pygocentrus_nattereri
ENSPLAG00000005715cpsf65288.772ENSPNAG00000024098CPSF69489.423Pygocentrus_nattereri
ENSPLAG00000005715cpsf65279.225ENSRNOG00000005927Cpsf66186.145Rattus_norvegicus
ENSPLAG00000005715cpsf69541.255ENSRNOG00000020668Cpsf77351.892Rattus_norvegicus
ENSPLAG00000005715cpsf65278.873ENSRBIG00000042827CPSF65278.472Rhinopithecus_bieti
ENSPLAG00000005715cpsf69544.554ENSRBIG00000031429CPSF78255.696Rhinopithecus_bieti
ENSPLAG00000005715cpsf69544.554ENSRROG00000045009CPSF77150.811Rhinopithecus_roxellana
ENSPLAG00000005715cpsf69481.369ENSRROG00000042758CPSF69479.350Rhinopithecus_roxellana
ENSPLAG00000005715cpsf68580.591ENSSBOG00000010652CPSF69478.344Saimiri_boliviensis_boliviensis
ENSPLAG00000005715cpsf69544.554ENSSBOG00000018431CPSF77150.811Saimiri_boliviensis_boliviensis
ENSPLAG00000005715cpsf66253.769ENSSHAG00000011964CPSF76851.892Sarcophilus_harrisii
ENSPLAG00000005715cpsf69586.372ENSSFOG00015001688CPSF65393.103Scleropages_formosus
ENSPLAG00000005715cpsf65279.791ENSSFOG00015015803CPSF65175.958Scleropages_formosus
ENSPLAG00000005715cpsf69136.798ENSSFOG00015010288cpsf76745.390Scleropages_formosus
ENSPLAG00000005715cpsf69587.568ENSSMAG00000000471cpsf67794.828Scophthalmus_maximus
ENSPLAG00000005715cpsf69588.288ENSSDUG00000005024cpsf69592.252Seriola_dumerili
ENSPLAG00000005715cpsf69588.288ENSSLDG00000009042cpsf69592.252Seriola_lalandi_dorsalis
ENSPLAG00000005715cpsf68583.071ENSSARG00000006743CPSF67884.190Sorex_araneus
ENSPLAG00000005715cpsf67055.612ENSSPUG00000019344CPSF77353.889Sphenodon_punctatus
ENSPLAG00000005715cpsf69593.333ENSSPAG00000013906cpsf69493.834Stegastes_partitus
ENSPLAG00000005715cpsf69481.369ENSSSCG00000038031CPSF69479.350Sus_scrofa
ENSPLAG00000005715cpsf69544.752ENSSSCG00000013083CPSF78056.329Sus_scrofa
ENSPLAG00000005715cpsf66849.721ENSTGUG00000006513CPSF77454.737Taeniopygia_guttata
ENSPLAG00000005715cpsf69489.981ENSTNIG00000007576cpsf69489.981Tetraodon_nigroviridis
ENSPLAG00000005715cpsf69143.299ENSTTRG00000011085CPSF77051.351Tursiops_truncatus
ENSPLAG00000005715cpsf69544.752ENSUAMG00000017809CPSF77151.351Ursus_americanus
ENSPLAG00000005715cpsf68580.591ENSUAMG00000023492CPSF69478.344Ursus_americanus
ENSPLAG00000005715cpsf69543.825ENSUMAG00000011825CPSF77351.351Ursus_maritimus
ENSPLAG00000005715cpsf68580.591ENSUMAG00000020779CPSF69478.344Ursus_maritimus
ENSPLAG00000005715cpsf67760.317ENSVVUG00000004939CPSF78056.329Vulpes_vulpes
ENSPLAG00000005715cpsf69742.202ENSXETG00000006715cpsf76747.568Xenopus_tropicalis
ENSPLAG00000005715cpsf610099.455ENSXCOG00000013423cpsf610099.455Xiphophorus_couchianus
ENSPLAG00000005715cpsf610099.659ENSXMAG00000003459cpsf610099.659Xiphophorus_maculatus

Copyright © , Bioinformatics Center, Sun Yat-sen Memorial Hospital, Sun Yat-sen University, China. All Rights Reserved.

Any comment and suggestion, please contact us