EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSPLAG00000006992 (Gene tree)
Gene ID: 106957109
Gene Symbol: tnrc6c2
Alias: -
Full Name: trinucleotide repeat-containing gene 6C protein-like
Gene Type: protein_coding
Species: Poecilia_latipinna
Status: putative
Strand: Plus strand
Length: 14671 bases
Position: chrKQ546191.1:99066-113736
Accession: 106957109
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPLAP00000005120	RRM_1	PF00076.22	0.00013	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPLAT00000008492	-	4692	XM_015048332	ENSPLAP00000005120	1563 (aa)	XP_014903818	-

Gene Model

Click here to download ENSPLAG00000006992's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPLAG00000006992's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSPLAG00000006992	tnrc6c2	95	57.518	ENSPLAG00000021055	tnrc6c1	100	54.120

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPLAG00000006992	tnrc6c2	100	76.852	ENSATEG00000003656	tnrc6c2	100	76.975	Anabas_testudineus
ENSPLAG00000006992	tnrc6c2	100	56.522	ENSAMXG00000009579	tnrc6c2	99	56.870	Astyanax_mexicanus
ENSPLAG00000006992	tnrc6c2	100	57.458	ENSDARG00000103851	tnrc6c2	100	56.079	Danio_rerio
ENSPLAG00000006992	tnrc6c2	95	58.854	ENSELUG00000008149	-	83	71.693	Esox_lucius
ENSPLAG00000006992	tnrc6c2	100	63.468	ENSELUG00000007206	tnrc6c2	99	63.230	Esox_lucius
ENSPLAG00000006992	tnrc6c2	100	84.014	ENSFHEG00000003901	tnrc6c2	100	84.435	Fundulus_heteroclitus
ENSPLAG00000006992	tnrc6c2	100	71.385	ENSGACG00000019401	tnrc6c2	90	71.385	Gasterosteus_aculeatus
ENSPLAG00000006992	tnrc6c2	100	72.830	ENSHCOG00000017802	tnrc6c2	87	72.040	Hippocampus_comes
ENSPLAG00000006992	tnrc6c2	100	52.746	ENSIPUG00000022767	tnrc6c2	99	50.983	Ictalurus_punctatus
ENSPLAG00000006992	tnrc6c2	60	86.751	ENSMAMG00000001718	tnrc6c2	96	86.646	Mastacembelus_armatus
ENSPLAG00000006992	tnrc6c2	60	86.506	ENSMALG00000020932	tnrc6c2	96	86.506	Monopterus_albus
ENSPLAG00000006992	tnrc6c2	100	78.487	ENSNBRG00000000452	tnrc6c2	100	78.266	Neolamprologus_brichardi
ENSPLAG00000006992	tnrc6c2	98	80.163	ENSONIG00000018123	tnrc6c2	100	80.125	Oreochromis_niloticus
ENSPLAG00000006992	tnrc6c2	100	78.388	ENSORLG00000003327	tnrc6c2	87	76.358	Oryzias_latipes
ENSPLAG00000006992	tnrc6c2	100	78.090	ENSORLG00020010730	tnrc6c2	87	78.030	Oryzias_latipes_hni
ENSPLAG00000006992	tnrc6c2	100	78.209	ENSORLG00015009232	tnrc6c2	87	76.716	Oryzias_latipes_hsok
ENSPLAG00000006992	tnrc6c2	100	78.746	ENSOMEG00000017952	tnrc6c2	87	77.075	Oryzias_melastigma
ENSPLAG00000006992	tnrc6c2	99	88.043	ENSPFOG00000011590	tnrc6c2	90	88.176	Poecilia_formosa
ENSPLAG00000006992	tnrc6c2	100	98.337	ENSPMEG00000012946	tnrc6c2	100	98.337	Poecilia_mexicana
ENSPLAG00000006992	tnrc6c2	100	95.162	ENSPREG00000015823	tnrc6c2	100	95.162	Poecilia_reticulata
ENSPLAG00000006992	tnrc6c2	62	86.867	ENSPNYG00000002582	tnrc6c2	100	78.002	Pundamilia_nyererei
ENSPLAG00000006992	tnrc6c2	100	54.846	ENSPNAG00000026838	tnrc6c2	99	56.026	Pygocentrus_nattereri
ENSPLAG00000006992	tnrc6c2	60	85.053	ENSSMAG00000015145	tnrc6c2	100	74.526	Scophthalmus_maximus
ENSPLAG00000006992	tnrc6c2	60	87.144	ENSSDUG00000020741	tnrc6c2	100	78.168	Seriola_dumerili
ENSPLAG00000006992	tnrc6c2	60	86.934	ENSSLDG00000002077	tnrc6c2	100	77.989	Seriola_lalandi_dorsalis
ENSPLAG00000006992	tnrc6c2	61	87.474	ENSSPAG00000013052	tnrc6c2	84	89.053	Stegastes_partitus
ENSPLAG00000006992	tnrc6c2	100	69.747	ENSTNIG00000004178	tnrc6c2	95	69.932	Tetraodon_nigroviridis
ENSPLAG00000006992	tnrc6c2	100	93.058	ENSXCOG00000013252	tnrc6c2	100	93.496	Xiphophorus_couchianus
ENSPLAG00000006992	tnrc6c2	100	93.698	ENSXMAG00000006739	tnrc6c2	100	93.698	Xiphophorus_maculatus