EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSPLAG00000007256 (Gene tree)
Gene ID: 106963089
Gene Symbol: pum1
Alias: -
Full Name: pumilio RNA binding family member 1
Gene Type: protein_coding
Species: Poecilia_latipinna
Status: putative
Strand: Minus strand
Length: 33772 bases
Position: chrKQ546807.1:98428-132199
Accession: 106963089
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPLAP00000005298	PUF	PF00806.19	3.3e-70	1	8
ENSPLAP00000005298	PUF	PF00806.19	3.3e-70	2	8
ENSPLAP00000005298	PUF	PF00806.19	3.3e-70	3	8
ENSPLAP00000005298	PUF	PF00806.19	3.3e-70	4	8
ENSPLAP00000005298	PUF	PF00806.19	3.3e-70	5	8
ENSPLAP00000005298	PUF	PF00806.19	3.3e-70	6	8
ENSPLAP00000005298	PUF	PF00806.19	3.3e-70	7	8
ENSPLAP00000005298	PUF	PF00806.19	3.3e-70	8	8
ENSPLAP00000022558	PUF	PF00806.19	9.6e-70	1	8
ENSPLAP00000022558	PUF	PF00806.19	9.6e-70	2	8
ENSPLAP00000022558	PUF	PF00806.19	9.6e-70	3	8
ENSPLAP00000022558	PUF	PF00806.19	9.6e-70	4	8
ENSPLAP00000022558	PUF	PF00806.19	9.6e-70	5	8
ENSPLAP00000022558	PUF	PF00806.19	9.6e-70	6	8
ENSPLAP00000022558	PUF	PF00806.19	9.6e-70	7	8
ENSPLAP00000022558	PUF	PF00806.19	9.6e-70	8	8

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPLAT00000008175	-	3192	-	ENSPLAP00000005298	1063 (aa)	-	-
ENSPLAT00000008149	-	5294	XM_015057813	ENSPLAP00000022558	1196 (aa)	XP_014913299	-

Gene Model

Click here to download ENSPLAG00000007256's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPLAG00000007256's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSPLAG00000007256	pum1	83	84.988	ENSPLAG00000001826	pum2	100	84.375

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPLAG00000007256	pum1	94	90.361	ENSG00000134644	PUM1	98	90.843	Homo_sapiens
ENSPLAG00000007256	pum1	100	97.989	ENSAPOG00000021632	pum1	100	95.151	Acanthochromis_polyacanthus
ENSPLAG00000007256	pum1	100	78.180	ENSAMEG00000017656	PUM1	97	73.333	Ailuropoda_melanoleuca
ENSPLAG00000007256	pum1	100	97.778	ENSACIG00000021013	pum1	100	94.398	Amphilophus_citrinellus
ENSPLAG00000007256	pum1	100	97.989	ENSAOCG00000003944	pum1	100	98.072	Amphiprion_ocellaris
ENSPLAG00000007256	pum1	100	97.989	ENSAPEG00000014550	pum1	100	98.072	Amphiprion_percula
ENSPLAG00000007256	pum1	100	97.249	ENSATEG00000016004	pum1	100	98.072	Anabas_testudineus
ENSPLAG00000007256	pum1	100	78.882	ENSAPLG00000009351	PUM1	100	73.714	Anas_platyrhynchos
ENSPLAG00000007256	pum1	100	77.882	ENSACAG00000000682	PUM1	98	73.570	Anolis_carolinensis
ENSPLAG00000007256	pum1	93	90.120	ENSANAG00000027865	PUM1	100	90.602	Aotus_nancymaae
ENSPLAG00000007256	pum1	89	97.778	ENSACLG00000019354	pum1	100	94.444	Astatotilapia_calliptera
ENSPLAG00000007256	pum1	100	82.458	ENSAMXG00000020607	pum1	96	80.132	Astyanax_mexicanus
ENSPLAG00000007256	pum1	94	90.843	ENSBTAG00000018979	PUM1	100	91.325	Bos_taurus
ENSPLAG00000007256	pum1	94	90.361	ENSCJAG00000006035	PUM1	100	90.843	Callithrix_jacchus
ENSPLAG00000007256	pum1	100	76.843	ENSCAFG00000011205	PUM1	100	71.878	Canis_familiaris
ENSPLAG00000007256	pum1	87	90.361	ENSCAFG00020024616	PUM1	98	90.843	Canis_lupus_dingo
ENSPLAG00000007256	pum1	94	90.361	ENSCHIG00000012952	PUM1	100	90.843	Capra_hircus
ENSPLAG00000007256	pum1	100	77.950	ENSTSYG00000008868	PUM1	100	82.840	Carlito_syrichta
ENSPLAG00000007256	pum1	100	77.950	ENSCPOG00000031613	PUM1	100	82.593	Cavia_porcellus
ENSPLAG00000007256	pum1	94	90.843	ENSCATG00000017991	PUM1	100	91.325	Cercocebus_atys
ENSPLAG00000007256	pum1	94	90.120	ENSCLAG00000007662	PUM1	100	90.602	Chinchilla_lanigera
ENSPLAG00000007256	pum1	100	76.868	ENSCSAG00000001028	PUM1	100	72.271	Chlorocebus_sabaeus
ENSPLAG00000007256	pum1	93	64.976	ENSCHOG00000010245	PUM1	93	65.459	Choloepus_hoffmanni
ENSPLAG00000007256	pum1	94	91.325	ENSCPBG00000009288	PUM1	100	91.325	Chrysemys_picta_bellii
ENSPLAG00000007256	pum1	94	90.361	ENSCANG00000042606	PUM1	100	90.843	Colobus_angolensis_palliatus
ENSPLAG00000007256	pum1	100	77.801	ENSCGRG00001024949	Pum1	100	82.571	Cricetulus_griseus_chok1gshd
ENSPLAG00000007256	pum1	100	77.801	ENSCGRG00000014197	Pum1	100	82.571	Cricetulus_griseus_crigri
ENSPLAG00000007256	pum1	92	92.273	ENSCSEG00000015981	pum1	100	92.455	Cynoglossus_semilaevis
ENSPLAG00000007256	pum1	100	98.413	ENSCVAG00000007043	pum1	100	95.485	Cyprinodon_variegatus
ENSPLAG00000007256	pum1	100	83.716	ENSDARG00000099256	pum1	100	79.308	Danio_rerio
ENSPLAG00000007256	pum1	100	78.571	ENSDNOG00000010939	PUM1	100	73.232	Dasypus_novemcinctus
ENSPLAG00000007256	pum1	86	90.120	ENSDORG00000001875	Pum1	100	90.602	Dipodomys_ordii
ENSPLAG00000007256	pum1	91	71.258	ENSETEG00000004355	PUM1	87	70.205	Echinops_telfairi
ENSPLAG00000007256	pum1	100	78.342	ENSEASG00005010813	PUM1	100	73.451	Equus_asinus_asinus
ENSPLAG00000007256	pum1	100	78.261	ENSECAG00000021369	PUM1	100	73.312	Equus_caballus
ENSPLAG00000007256	pum1	77	90.000	ENSEEUG00000003871	PUM1	74	90.444	Erinaceus_europaeus
ENSPLAG00000007256	pum1	100	88.574	ENSELUG00000002409	pum1	100	91.261	Esox_lucius
ENSPLAG00000007256	pum1	94	90.843	ENSFCAG00000010374	PUM1	100	91.325	Felis_catus
ENSPLAG00000007256	pum1	100	78.270	ENSFALG00000001214	PUM1	93	77.343	Ficedula_albicollis
ENSPLAG00000007256	pum1	100	77.847	ENSFDAG00000011319	PUM1	100	82.469	Fukomys_damarensis
ENSPLAG00000007256	pum1	64	97.353	ENSGMOG00000010491	pum1	100	87.801	Gadus_morhua
ENSPLAG00000007256	pum1	96	89.940	ENSGALG00000042598	PUM1	99	89.940	Gallus_gallus
ENSPLAG00000007256	pum1	100	98.836	ENSGAFG00000015617	pum1	100	96.070	Gambusia_affinis
ENSPLAG00000007256	pum1	99	95.979	ENSGACG00000005717	pum1	100	92.791	Gasterosteus_aculeatus
ENSPLAG00000007256	pum1	96	90.141	ENSGAGG00000001290	PUM1	99	90.141	Gopherus_agassizii
ENSPLAG00000007256	pum1	94	90.361	ENSGGOG00000011983	PUM1	100	90.843	Gorilla_gorilla
ENSPLAG00000007256	pum1	100	97.778	ENSHBUG00000018718	pum1	100	94.983	Haplochromis_burtoni
ENSPLAG00000007256	pum1	100	77.847	ENSHGLG00000013819	Pum1	100	82.469	Heterocephalus_glaber_female
ENSPLAG00000007256	pum1	100	77.847	ENSHGLG00100008621	Pum1	100	82.469	Heterocephalus_glaber_male
ENSPLAG00000007256	pum1	92	86.442	ENSHCOG00000005149	pum1	100	87.079	Hippocampus_comes
ENSPLAG00000007256	pum1	100	81.230	ENSIPUG00000020421	pum1	100	79.344	Ictalurus_punctatus
ENSPLAG00000007256	pum1	100	78.238	ENSSTOG00000010757	PUM1	100	82.840	Ictidomys_tridecemlineatus
ENSPLAG00000007256	pum1	100	78.031	ENSJJAG00000000530	Pum1	100	82.593	Jaculus_jaculus
ENSPLAG00000007256	pum1	100	97.672	ENSKMAG00000003481	pum1	100	94.649	Kryptolebias_marmoratus
ENSPLAG00000007256	pum1	100	96.508	ENSLBEG00000002527	pum1	100	93.896	Labrus_bergylta
ENSPLAG00000007256	pum1	100	76.452	ENSLACG00000017188	PUM1	99	71.279	Latimeria_chalumnae
ENSPLAG00000007256	pum1	100	83.177	ENSLOCG00000005210	pum1	95	82.027	Lepisosteus_oculatus
ENSPLAG00000007256	pum1	100	78.157	ENSLAFG00000003178	PUM1	100	73.612	Loxodonta_africana
ENSPLAG00000007256	pum1	94	90.843	ENSMFAG00000010291	PUM1	100	91.325	Macaca_fascicularis
ENSPLAG00000007256	pum1	94	90.361	ENSMMUG00000013520	PUM1	100	90.843	Macaca_mulatta
ENSPLAG00000007256	pum1	94	90.361	ENSMNEG00000034639	PUM1	100	90.843	Macaca_nemestrina
ENSPLAG00000007256	pum1	94	90.361	ENSMLEG00000038743	PUM1	100	90.843	Mandrillus_leucophaeus
ENSPLAG00000007256	pum1	100	97.460	ENSMAMG00000011606	pum1	100	94.565	Mastacembelus_armatus
ENSPLAG00000007256	pum1	100	97.778	ENSMZEG00005005834	pum1	100	94.983	Maylandia_zebra
ENSPLAG00000007256	pum1	100	79.067	ENSMGAG00000000724	PUM1	100	77.927	Meleagris_gallopavo
ENSPLAG00000007256	pum1	100	77.905	ENSMAUG00000022090	Pum1	100	82.797	Mesocricetus_auratus
ENSPLAG00000007256	pum1	94	89.423	ENSMICG00000012213	-	100	87.952	Microcebus_murinus
ENSPLAG00000007256	pum1	94	90.361	ENSMICG00000007713	-	100	90.843	Microcebus_murinus
ENSPLAG00000007256	pum1	100	77.927	ENSMOCG00000015463	Pum1	100	82.571	Microtus_ochrogaster
ENSPLAG00000007256	pum1	100	77.847	ENSMODG00000017067	PUM1	100	73.387	Monodelphis_domestica
ENSPLAG00000007256	pum1	86	98.072	ENSMALG00000016399	pum1	100	98.072	Monopterus_albus
ENSPLAG00000007256	pum1	100	77.617	MGP_CAROLIEiJ_G0026549	Pum1	100	82.469	Mus_caroli
ENSPLAG00000007256	pum1	100	77.513	ENSMUSG00000028580	Pum1	100	82.346	Mus_musculus
ENSPLAG00000007256	pum1	100	77.617	MGP_PahariEiJ_G0028881	Pum1	100	82.346	Mus_pahari
ENSPLAG00000007256	pum1	100	77.433	MGP_SPRETEiJ_G0027529	Pum1	100	82.222	Mus_spretus
ENSPLAG00000007256	pum1	100	78.446	ENSMPUG00000015454	PUM1	100	73.371	Mustela_putorius_furo
ENSPLAG00000007256	pum1	100	78.054	ENSMLUG00000006490	PUM1	100	72.990	Myotis_lucifugus
ENSPLAG00000007256	pum1	100	78.238	ENSNGAG00000002378	Pum1	100	82.840	Nannospalax_galili
ENSPLAG00000007256	pum1	86	98.500	ENSNBRG00000010689	pum1	100	98.500	Neolamprologus_brichardi
ENSPLAG00000007256	pum1	94	87.229	ENSNLEG00000001151	PUM1	100	87.711	Nomascus_leucogenys
ENSPLAG00000007256	pum1	74	78.276	ENSMEUG00000000976	-	69	80.108	Notamacropus_eugenii
ENSPLAG00000007256	pum1	83	91.589	ENSOPRG00000001776	PUM1	75	91.589	Ochotona_princeps
ENSPLAG00000007256	pum1	100	77.617	ENSODEG00000003465	PUM1	100	82.593	Octodon_degus
ENSPLAG00000007256	pum1	100	97.989	ENSONIG00000002290	pum1	100	95.151	Oreochromis_niloticus
ENSPLAG00000007256	pum1	87	62.648	ENSOANG00000004902	-	100	60.137	Ornithorhynchus_anatinus
ENSPLAG00000007256	pum1	99	78.112	ENSOCUG00000008641	PUM1	99	73.269	Oryctolagus_cuniculus
ENSPLAG00000007256	pum1	100	96.733	ENSORLG00000011482	pum1	100	94.083	Oryzias_latipes
ENSPLAG00000007256	pum1	100	96.733	ENSORLG00020019461	pum1	100	94.083	Oryzias_latipes_hni
ENSPLAG00000007256	pum1	100	96.839	ENSORLG00015011375	pum1	100	94.083	Oryzias_latipes_hsok
ENSPLAG00000007256	pum1	87	97.831	ENSOMEG00000009312	pum1	100	97.831	Oryzias_melastigma
ENSPLAG00000007256	pum1	100	74.793	ENSOGAG00000011063	PUM1	100	70.806	Otolemur_garnettii
ENSPLAG00000007256	pum1	94	90.361	ENSOARG00000001899	PUM1	100	90.843	Ovis_aries
ENSPLAG00000007256	pum1	94	90.361	ENSPPAG00000044003	PUM1	100	90.843	Pan_paniscus
ENSPLAG00000007256	pum1	100	78.342	ENSPPRG00000001370	PUM1	100	82.963	Panthera_pardus
ENSPLAG00000007256	pum1	100	78.135	ENSPTIG00000010798	PUM1	100	82.963	Panthera_tigris_altaica
ENSPLAG00000007256	pum1	94	90.361	ENSPTRG00000000453	PUM1	100	90.843	Pan_troglodytes
ENSPLAG00000007256	pum1	94	90.843	ENSPANG00000016338	PUM1	100	91.325	Papio_anubis
ENSPLAG00000007256	pum1	95	92.771	ENSPKIG00000010578	pum1	100	85.350	Paramormyrops_kingsleyae
ENSPLAG00000007256	pum1	100	79.067	ENSPSIG00000014118	PUM1	98	77.433	Pelodiscus_sinensis
ENSPLAG00000007256	pum1	86	97.458	ENSPMGG00000005836	pum1	100	97.458	Periophthalmus_magnuspinnatus
ENSPLAG00000007256	pum1	100	77.905	ENSPEMG00000010009	Pum1	100	82.797	Peromyscus_maniculatus_bairdii
ENSPLAG00000007256	pum1	94	91.325	ENSPCIG00000014151	PUM1	100	91.084	Phascolarctos_cinereus
ENSPLAG00000007256	pum1	95	99.912	ENSPFOG00000007289	pum1	100	99.912	Poecilia_formosa
ENSPLAG00000007256	pum1	91	99.683	ENSPMEG00000019543	pum1	99	96.649	Poecilia_mexicana
ENSPLAG00000007256	pum1	100	99.048	ENSPREG00000005195	pum1	100	100.000	Poecilia_reticulata
ENSPLAG00000007256	pum1	100	76.239	ENSPPYG00000001621	PUM1	100	71.981	Pongo_abelii
ENSPLAG00000007256	pum1	83	92.593	ENSPCAG00000001979	PUM1	73	92.593	Procavia_capensis
ENSPLAG00000007256	pum1	94	90.361	ENSPCOG00000004398	PUM1	100	90.843	Propithecus_coquereli
ENSPLAG00000007256	pum1	100	75.934	ENSPVAG00000005207	PUM1	97	71.578	Pteropus_vampyrus
ENSPLAG00000007256	pum1	100	97.884	ENSPNYG00000009518	pum1	100	95.067	Pundamilia_nyererei
ENSPLAG00000007256	pum1	100	82.668	ENSPNAG00000026728	pum1	100	83.072	Pygocentrus_nattereri
ENSPLAG00000007256	pum1	100	77.824	ENSRNOG00000011709	Pum1	100	73.049	Rattus_norvegicus
ENSPLAG00000007256	pum1	94	90.843	ENSRBIG00000042521	PUM1	100	91.325	Rhinopithecus_bieti
ENSPLAG00000007256	pum1	94	90.361	ENSRROG00000020156	PUM1	100	90.843	Rhinopithecus_roxellana
ENSPLAG00000007256	pum1	94	90.361	ENSSBOG00000032037	PUM1	100	90.843	Saimiri_boliviensis_boliviensis
ENSPLAG00000007256	pum1	100	77.743	ENSSHAG00000010918	PUM1	100	73.468	Sarcophilus_harrisii
ENSPLAG00000007256	pum1	100	96.190	ENSSMAG00000010918	pum1	100	98.072	Scophthalmus_maximus
ENSPLAG00000007256	pum1	100	97.778	ENSSDUG00000009021	pum1	100	94.900	Seriola_dumerili
ENSPLAG00000007256	pum1	100	97.742	ENSSLDG00000009667	pum1	100	97.742	Seriola_lalandi_dorsalis
ENSPLAG00000007256	pum1	98	79.667	ENSSARG00000003055	PUM1	88	80.952	Sorex_araneus
ENSPLAG00000007256	pum1	100	78.860	ENSSPUG00000006267	PUM1	100	73.693	Sphenodon_punctatus
ENSPLAG00000007256	pum1	100	98.095	ENSSPAG00000016636	pum1	100	98.072	Stegastes_partitus
ENSPLAG00000007256	pum1	100	88.531	ENSSSCG00000003591	PUM1	100	91.325	Sus_scrofa
ENSPLAG00000007256	pum1	100	96.614	ENSTRUG00000013121	pum1	100	97.875	Takifugu_rubripes
ENSPLAG00000007256	pum1	100	96.512	ENSTNIG00000016983	pum1	99	92.269	Tetraodon_nigroviridis
ENSPLAG00000007256	pum1	87	89.024	ENSTBEG00000013810	PUM1	89	89.024	Tupaia_belangeri
ENSPLAG00000007256	pum1	92	78.135	ENSTTRG00000007436	PUM1	88	75.618	Tursiops_truncatus
ENSPLAG00000007256	pum1	98	76.190	ENSUAMG00000018262	-	100	71.378	Ursus_americanus
ENSPLAG00000007256	pum1	94	90.843	ENSUMAG00000009211	PUM1	100	91.325	Ursus_maritimus
ENSPLAG00000007256	pum1	93	83.580	ENSVPAG00000005902	PUM1	92	83.333	Vicugna_pacos
ENSPLAG00000007256	pum1	94	90.843	ENSVVUG00000014631	PUM1	100	91.325	Vulpes_vulpes
ENSPLAG00000007256	pum1	100	73.347	ENSXETG00000012904	pum1	99	69.453	Xenopus_tropicalis
ENSPLAG00000007256	pum1	100	98.871	ENSXMAG00000002945	pum1	100	98.871	Xiphophorus_maculatus