EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSPLAG00000008017 (Gene tree)
Gene ID: 106942593
Gene Symbol: srl
Alias: -
Full Name: sarcalumenin
Gene Type: protein_coding
Species: Poecilia_latipinna
Status: putative
Strand: Plus strand
Length: 9952 bases
Position: chrKQ545411.1:530274-540225
Accession: 106942593
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPLAP00000005977	MMR_HSR1	PF01926.23	1.7e-08	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPLAT00000007025	-	1386	XM_015025918	ENSPLAP00000005977	461 (aa)	XP_014881404	-

Gene Model

Click here to download ENSPLAG00000008017's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPLAG00000008017's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSPLAG00000008017	srl	81	34.048	ENSPLAG00000001005	ehd3	69	34.286
ENSPLAG00000008017	srl	97	77.232	ENSPLAG00000002932	SRL	99	77.232
ENSPLAG00000008017	srl	88	32.346	ENSPLAG00000023296	ehd1a	73	32.346
ENSPLAG00000008017	srl	89	33.738	ENSPLAG00000020534	ehd2b	74	33.738
ENSPLAG00000008017	srl	87	31.841	ENSPLAG00000000301	-	71	31.841
ENSPLAG00000008017	srl	85	32.911	ENSPLAG00000003565	ehd4	70	32.911

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPLAG00000008017	srl	98	81.099	ENSG00000185739	SRL	99	83.023	Homo_sapiens
ENSPLAG00000008017	srl	96	77.828	ENSAPOG00000012432	SRL	98	77.828	Acanthochromis_polyacanthus
ENSPLAG00000008017	srl	100	93.709	ENSAPOG00000018093	srl	99	95.692	Acanthochromis_polyacanthus
ENSPLAG00000008017	srl	99	80.828	ENSAMEG00000010862	SRL	52	80.828	Ailuropoda_melanoleuca
ENSPLAG00000008017	srl	97	76.116	ENSACIG00000015419	SRL	99	76.116	Amphilophus_citrinellus
ENSPLAG00000008017	srl	98	95.122	ENSACIG00000015799	srl	100	95.122	Amphilophus_citrinellus
ENSPLAG00000008017	srl	94	96.083	ENSAOCG00000007574	srl	100	96.083	Amphiprion_ocellaris
ENSPLAG00000008017	srl	96	77.928	ENSAOCG00000017049	SRL	97	78.153	Amphiprion_ocellaris
ENSPLAG00000008017	srl	100	93.926	ENSAPEG00000006911	srl	98	93.926	Amphiprion_percula
ENSPLAG00000008017	srl	96	74.718	ENSAPEG00000006533	SRL	96	75.225	Amphiprion_percula
ENSPLAG00000008017	srl	99	94.771	ENSATEG00000024315	srl	97	94.771	Anabas_testudineus
ENSPLAG00000008017	srl	96	77.412	ENSATEG00000009643	SRL	52	77.632	Anabas_testudineus
ENSPLAG00000008017	srl	96	82.781	ENSACAG00000016380	SRL	87	80.761	Anolis_carolinensis
ENSPLAG00000008017	srl	100	93.926	ENSACLG00000027685	srl	98	95.759	Astatotilapia_calliptera
ENSPLAG00000008017	srl	99	74.200	ENSACLG00000024674	SRL	55	77.451	Astatotilapia_calliptera
ENSPLAG00000008017	srl	99	90.393	ENSAMXG00000018789	srl	90	90.393	Astyanax_mexicanus
ENSPLAG00000008017	srl	91	79.286	ENSAMXG00000038693	SRL	100	75.276	Astyanax_mexicanus
ENSPLAG00000008017	srl	98	82.262	ENSBTAG00000001078	SRL	57	82.262	Bos_taurus
ENSPLAG00000008017	srl	96	82.805	ENSCJAG00000019750	SRL	98	80.172	Callithrix_jacchus
ENSPLAG00000008017	srl	99	81.004	ENSCAFG00000019233	SRL	85	80.702	Canis_familiaris
ENSPLAG00000008017	srl	98	81.360	ENSCAFG00020025024	SRL	56	81.360	Canis_lupus_dingo
ENSPLAG00000008017	srl	99	81.481	ENSCHIG00000017927	SRL	57	81.579	Capra_hircus
ENSPLAG00000008017	srl	99	80.819	ENSTSYG00000007919	SRL	99	83.953	Carlito_syrichta
ENSPLAG00000008017	srl	97	82.697	ENSCPOG00000012643	SRL	97	81.046	Cavia_porcellus
ENSPLAG00000008017	srl	96	77.602	ENSCCAG00000032646	SRL	100	84.433	Cebus_capucinus
ENSPLAG00000008017	srl	97	82.247	ENSCATG00000032227	-	98	80.172	Cercocebus_atys
ENSPLAG00000008017	srl	97	82.921	ENSCLAG00000016242	SRL	97	81.264	Chinchilla_lanigera
ENSPLAG00000008017	srl	84	86.234	ENSCHOG00000001618	SRL	52	86.234	Choloepus_hoffmanni
ENSPLAG00000008017	srl	96	86.269	ENSCPBG00000026371	SRL	97	79.574	Chrysemys_picta_bellii
ENSPLAG00000008017	srl	90	60.671	ENSCING00000005231	-	93	60.671	Ciona_intestinalis
ENSPLAG00000008017	srl	98	81.099	ENSCANG00000035872	SRL	99	83.023	Colobus_angolensis_palliatus
ENSPLAG00000008017	srl	99	81.838	ENSCGRG00001016630	Srl	97	81.917	Cricetulus_griseus_chok1gshd
ENSPLAG00000008017	srl	99	81.838	ENSCGRG00000005458	Srl	97	81.917	Cricetulus_griseus_crigri
ENSPLAG00000008017	srl	100	93.275	ENSCSEG00000016151	srl	98	93.682	Cynoglossus_semilaevis
ENSPLAG00000008017	srl	99	74.026	ENSCSEG00000011866	SRL	93	74.242	Cynoglossus_semilaevis
ENSPLAG00000008017	srl	98	97.111	ENSCVAG00000003513	srl	97	97.105	Cyprinodon_variegatus
ENSPLAG00000008017	srl	98	76.522	ENSCVAG00000022465	SRL	61	76.522	Cyprinodon_variegatus
ENSPLAG00000008017	srl	100	90.239	ENSDARG00000104587	srl	98	90.239	Danio_rerio
ENSPLAG00000008017	srl	82	78.125	ENSDARG00000112959	CABZ01072309.1	100	78.125	Danio_rerio
ENSPLAG00000008017	srl	98	81.858	ENSDNOG00000011643	SRL	54	81.678	Dasypus_novemcinctus
ENSPLAG00000008017	srl	98	82.743	ENSDORG00000014807	Srl	97	81.917	Dipodomys_ordii
ENSPLAG00000008017	srl	80	66.043	ENSEBUG00000015937	srl	94	66.043	Eptatretus_burgeri
ENSPLAG00000008017	srl	98	82.262	ENSEASG00005000942	SRL	54	82.262	Equus_asinus_asinus
ENSPLAG00000008017	srl	98	82.262	ENSECAG00000024219	SRL	95	82.262	Equus_caballus
ENSPLAG00000008017	srl	100	84.937	ENSELUG00000015616	srl	98	84.937	Esox_lucius
ENSPLAG00000008017	srl	96	82.579	ENSFCAG00000022075	SRL	98	79.741	Felis_catus
ENSPLAG00000008017	srl	98	82.262	ENSFALG00000004328	SRL	64	82.262	Ficedula_albicollis
ENSPLAG00000008017	srl	97	83.596	ENSFDAG00000006199	SRL	97	81.917	Fukomys_damarensis
ENSPLAG00000008017	srl	96	77.703	ENSFHEG00000011854	SRL	99	77.928	Fundulus_heteroclitus
ENSPLAG00000008017	srl	98	97.556	ENSFHEG00000011239	srl	100	95.248	Fundulus_heteroclitus
ENSPLAG00000008017	srl	96	88.767	ENSGMOG00000014954	srl	100	88.767	Gadus_morhua
ENSPLAG00000008017	srl	99	81.878	ENSGALG00000038884	SRL	97	81.878	Gallus_gallus
ENSPLAG00000008017	srl	100	99.566	ENSGAFG00000000010	srl	100	99.566	Gambusia_affinis
ENSPLAG00000008017	srl	97	78.795	ENSGAFG00000016984	SRL	99	78.795	Gambusia_affinis
ENSPLAG00000008017	srl	96	92.088	ENSGACG00000011332	srl	100	92.088	Gasterosteus_aculeatus
ENSPLAG00000008017	srl	97	82.247	ENSGGOG00000011312	-	98	80.172	Gorilla_gorilla
ENSPLAG00000008017	srl	100	93.926	ENSHBUG00000007581	srl	98	95.759	Haplochromis_burtoni
ENSPLAG00000008017	srl	99	74.627	ENSHBUG00000015710	SRL	58	74.627	Haplochromis_burtoni
ENSPLAG00000008017	srl	97	83.371	ENSHGLG00000015271	SRL	97	81.699	Heterocephalus_glaber_female
ENSPLAG00000008017	srl	97	83.371	ENSHGLG00100019378	SRL	97	81.699	Heterocephalus_glaber_male
ENSPLAG00000008017	srl	99	93.696	ENSHCOG00000008687	srl	99	95.312	Hippocampus_comes
ENSPLAG00000008017	srl	96	75.824	ENSHCOG00000001012	SRL	50	75.824	Hippocampus_comes
ENSPLAG00000008017	srl	99	90.217	ENSIPUG00000012513	srl	99	89.783	Ictalurus_punctatus
ENSPLAG00000008017	srl	95	70.872	ENSIPUG00000011609	SRL	95	70.872	Ictalurus_punctatus
ENSPLAG00000008017	srl	97	83.146	ENSSTOG00000021151	-	97	81.481	Ictidomys_tridecemlineatus
ENSPLAG00000008017	srl	99	82.135	ENSJJAG00000016400	Srl	97	82.135	Jaculus_jaculus
ENSPLAG00000008017	srl	96	77.778	ENSKMAG00000019537	SRL	100	77.778	Kryptolebias_marmoratus
ENSPLAG00000008017	srl	98	94.235	ENSKMAG00000014115	srl	93	96.675	Kryptolebias_marmoratus
ENSPLAG00000008017	srl	100	93.275	ENSLBEG00000026643	srl	98	93.275	Labrus_bergylta
ENSPLAG00000008017	srl	96	76.697	ENSLBEG00000013811	SRL	95	76.923	Labrus_bergylta
ENSPLAG00000008017	srl	98	83.850	ENSLACG00000002825	SRL	100	83.850	Latimeria_chalumnae
ENSPLAG00000008017	srl	99	87.391	ENSLOCG00000002644	srl	98	87.391	Lepisosteus_oculatus
ENSPLAG00000008017	srl	96	82.579	ENSLAFG00000006329	SRL	50	82.579	Loxodonta_africana
ENSPLAG00000008017	srl	93	83.023	ENSMFAG00000037383	SRL	99	83.023	Macaca_fascicularis
ENSPLAG00000008017	srl	99	80.610	ENSMNEG00000019236	-	97	80.610	Macaca_nemestrina
ENSPLAG00000008017	srl	98	74.505	ENSMLEG00000032156	SRL	98	73.707	Mandrillus_leucophaeus
ENSPLAG00000008017	srl	99	91.489	ENSMAMG00000023322	srl	99	92.340	Mastacembelus_armatus
ENSPLAG00000008017	srl	96	76.432	ENSMAMG00000013756	SRL	53	76.432	Mastacembelus_armatus
ENSPLAG00000008017	srl	99	74.414	ENSMZEG00005004010	SRL	59	74.414	Maylandia_zebra
ENSPLAG00000008017	srl	100	93.926	ENSMZEG00005004548	srl	98	95.759	Maylandia_zebra
ENSPLAG00000008017	srl	98	82.080	ENSMGAG00000009342	SRL	95	84.656	Meleagris_gallopavo
ENSPLAG00000008017	srl	98	81.758	ENSMICG00000032307	SRL	97	81.169	Microcebus_murinus
ENSPLAG00000008017	srl	99	81.264	ENSMOCG00000008208	Srl	97	81.264	Microtus_ochrogaster
ENSPLAG00000008017	srl	98	94.000	ENSMMOG00000013970	srl	100	94.000	Mola_mola
ENSPLAG00000008017	srl	96	75.385	ENSMMOG00000021572	SRL	99	75.385	Mola_mola
ENSPLAG00000008017	srl	98	82.340	ENSMODG00000016380	-	51	82.340	Monodelphis_domestica
ENSPLAG00000008017	srl	91	78.282	ENSMALG00000000670	SRL	98	78.282	Monopterus_albus
ENSPLAG00000008017	srl	98	94.444	ENSMALG00000005039	srl	99	94.643	Monopterus_albus
ENSPLAG00000008017	srl	99	82.713	MGP_CAROLIEiJ_G0020400	Srl	94	84.270	Mus_caroli
ENSPLAG00000008017	srl	99	82.713	ENSMUSG00000022519	Srl	94	84.270	Mus_musculus
ENSPLAG00000008017	srl	99	82.713	MGP_SPRETEiJ_G0021294	Srl	94	84.270	Mus_spretus
ENSPLAG00000008017	srl	98	81.637	ENSMPUG00000015025	SRL	55	81.637	Mustela_putorius_furo
ENSPLAG00000008017	srl	98	82.018	ENSMLUG00000030733	SRL	57	82.018	Myotis_lucifugus
ENSPLAG00000008017	srl	97	84.045	ENSNGAG00000019741	Srl	97	82.353	Nannospalax_galili
ENSPLAG00000008017	srl	99	73.774	ENSNBRG00000002422	SRL	56	76.620	Neolamprologus_brichardi
ENSPLAG00000008017	srl	100	94.143	ENSNBRG00000023775	srl	98	94.553	Neolamprologus_brichardi
ENSPLAG00000008017	srl	97	76.854	ENSNLEG00000029051	SRL	98	75.216	Nomascus_leucogenys
ENSPLAG00000008017	srl	97	77.079	ENSOPRG00000000477	-	52	77.079	Ochotona_princeps
ENSPLAG00000008017	srl	97	83.371	ENSODEG00000013256	SRL	94	83.371	Octodon_degus
ENSPLAG00000008017	srl	99	94.105	ENSONIG00000005192	srl	97	94.105	Oreochromis_niloticus
ENSPLAG00000008017	srl	96	75.847	ENSORLG00000015064	SRL	97	75.847	Oryzias_latipes
ENSPLAG00000008017	srl	98	95.778	ENSORLG00000008291	srl	92	96.907	Oryzias_latipes
ENSPLAG00000008017	srl	98	95.778	ENSORLG00020019784	srl	83	94.541	Oryzias_latipes_hni
ENSPLAG00000008017	srl	96	76.072	ENSORLG00020018173	SRL	97	76.072	Oryzias_latipes_hni
ENSPLAG00000008017	srl	98	95.778	ENSORLG00015009342	srl	94	94.541	Oryzias_latipes_hsok
ENSPLAG00000008017	srl	96	76.072	ENSORLG00015019063	SRL	97	76.072	Oryzias_latipes_hsok
ENSPLAG00000008017	srl	96	74.561	ENSOMEG00000005682	SRL	53	74.836	Oryzias_melastigma
ENSPLAG00000008017	srl	98	95.778	ENSOMEG00000010006	srl	98	96.591	Oryzias_melastigma
ENSPLAG00000008017	srl	97	82.472	ENSOGAG00000029266	SRL	54	82.472	Otolemur_garnettii
ENSPLAG00000008017	srl	99	81.481	ENSOARG00000003074	SRL	57	81.481	Ovis_aries
ENSPLAG00000008017	srl	97	82.247	ENSPPAG00000024919	-	99	83.023	Pan_paniscus
ENSPLAG00000008017	srl	96	82.579	ENSPPRG00000010274	SRL	99	83.023	Panthera_pardus
ENSPLAG00000008017	srl	96	82.579	ENSPTIG00000015162	SRL	99	83.023	Panthera_tigris_altaica
ENSPLAG00000008017	srl	97	82.247	ENSPTRG00000007712	SRL	99	83.023	Pan_troglodytes
ENSPLAG00000008017	srl	99	80.610	ENSPANG00000013804	SRL	98	80.610	Papio_anubis
ENSPLAG00000008017	srl	96	79.955	ENSPKIG00000024974	SRL	88	79.955	Paramormyrops_kingsleyae
ENSPLAG00000008017	srl	99	89.760	ENSPKIG00000006405	srl	97	89.760	Paramormyrops_kingsleyae
ENSPLAG00000008017	srl	96	83.108	ENSPSIG00000008586	SRL	50	83.108	Pelodiscus_sinensis
ENSPLAG00000008017	srl	96	95.249	ENSPMGG00000021081	srl	95	95.249	Periophthalmus_magnuspinnatus
ENSPLAG00000008017	srl	96	76.471	ENSPMGG00000023505	-	99	76.471	Periophthalmus_magnuspinnatus
ENSPLAG00000008017	srl	97	83.146	ENSPEMG00000015842	Srl	97	81.481	Peromyscus_maniculatus_bairdii
ENSPLAG00000008017	srl	91	67.890	ENSPMAG00000004786	srl	99	67.890	Petromyzon_marinus
ENSPLAG00000008017	srl	98	82.483	ENSPCIG00000012128	SRL	98	82.483	Phascolarctos_cinereus
ENSPLAG00000008017	srl	99	96.170	ENSPFOG00000011408	srl	98	95.368	Poecilia_formosa
ENSPLAG00000008017	srl	98	75.536	ENSPMEG00000005890	SRL	61	75.107	Poecilia_mexicana
ENSPLAG00000008017	srl	100	100.000	ENSPMEG00000006745	srl	100	100.000	Poecilia_mexicana
ENSPLAG00000008017	srl	97	78.125	ENSPREG00000000315	SRL	99	78.125	Poecilia_reticulata
ENSPLAG00000008017	srl	98	99.778	ENSPREG00000007751	srl	99	99.778	Poecilia_reticulata
ENSPLAG00000008017	srl	91	84.487	ENSPPYG00000007053	SRL	98	84.487	Pongo_abelii
ENSPLAG00000008017	srl	96	83.447	ENSPCAG00000003378	-	50	83.447	Procavia_capensis
ENSPLAG00000008017	srl	98	81.758	ENSPCOG00000023135	SRL	99	83.953	Propithecus_coquereli
ENSPLAG00000008017	srl	98	82.301	ENSPVAG00000006586	SRL	55	82.301	Pteropus_vampyrus
ENSPLAG00000008017	srl	100	93.709	ENSPNYG00000001200	srl	98	95.536	Pundamilia_nyererei
ENSPLAG00000008017	srl	99	74.414	ENSPNYG00000003423	SRL	58	74.414	Pundamilia_nyererei
ENSPLAG00000008017	srl	100	89.154	ENSPNAG00000023106	srl	98	89.154	Pygocentrus_nattereri
ENSPLAG00000008017	srl	99	74.837	ENSPNAG00000007361	-	95	74.837	Pygocentrus_nattereri
ENSPLAG00000008017	srl	98	82.965	ENSRNOG00000005269	Srl	50	82.965	Rattus_norvegicus
ENSPLAG00000008017	srl	96	82.805	ENSSBOG00000029273	SRL	98	80.172	Saimiri_boliviensis_boliviensis
ENSPLAG00000008017	srl	99	82.018	ENSSHAG00000011715	-	51	82.018	Sarcophilus_harrisii
ENSPLAG00000008017	srl	96	91.667	ENSSFOG00015009773	srl	99	89.201	Scleropages_formosus
ENSPLAG00000008017	srl	96	77.477	ENSSFOG00015021327	SRL	50	77.232	Scleropages_formosus
ENSPLAG00000008017	srl	99	92.779	ENSSMAG00000016274	srl	99	92.779	Scophthalmus_maximus
ENSPLAG00000008017	srl	96	74.945	ENSSMAG00000002232	SRL	50	74.945	Scophthalmus_maximus
ENSPLAG00000008017	srl	96	96.622	ENSSDUG00000010808	srl	98	96.622	Seriola_dumerili
ENSPLAG00000008017	srl	96	78.000	ENSSDUG00000009161	SRL	99	78.000	Seriola_dumerili
ENSPLAG00000008017	srl	98	95.778	ENSSLDG00000022024	srl	99	94.336	Seriola_lalandi_dorsalis
ENSPLAG00000008017	srl	96	77.729	ENSSLDG00000014601	SRL	100	78.289	Seriola_lalandi_dorsalis
ENSPLAG00000008017	srl	98	82.340	ENSSPUG00000016859	SRL	99	82.340	Sphenodon_punctatus
ENSPLAG00000008017	srl	96	79.365	ENSSPAG00000014254	SRL	98	79.365	Stegastes_partitus
ENSPLAG00000008017	srl	99	94.118	ENSSPAG00000019105	srl	97	94.118	Stegastes_partitus
ENSPLAG00000008017	srl	98	81.596	ENSSSCG00000007949	SRL	99	82.207	Sus_scrofa
ENSPLAG00000008017	srl	98	82.483	ENSTGUG00000003951	-	99	82.483	Taeniopygia_guttata
ENSPLAG00000008017	srl	79	86.464	ENSTGUG00000016121	-	100	86.464	Taeniopygia_guttata
ENSPLAG00000008017	srl	99	94.105	ENSTRUG00000006005	srl	97	94.105	Takifugu_rubripes
ENSPLAG00000008017	srl	91	78.520	ENSTRUG00000013310	SRL	55	78.333	Takifugu_rubripes
ENSPLAG00000008017	srl	98	95.111	ENSTNIG00000009739	srl	97	93.886	Tetraodon_nigroviridis
ENSPLAG00000008017	srl	98	81.278	ENSUAMG00000005701	SRL	56	81.099	Ursus_americanus
ENSPLAG00000008017	srl	98	81.278	ENSUMAG00000002574	SRL	56	81.099	Ursus_maritimus
ENSPLAG00000008017	srl	97	81.678	ENSVVUG00000016331	-	50	81.678	Vulpes_vulpes
ENSPLAG00000008017	srl	99	80.828	ENSXETG00000017313	srl	99	82.247	Xenopus_tropicalis
ENSPLAG00000008017	srl	91	98.812	ENSXCOG00000010424	srl	97	98.812	Xiphophorus_couchianus
ENSPLAG00000008017	srl	98	78.444	ENSXCOG00000014584	SRL	99	78.444	Xiphophorus_couchianus
ENSPLAG00000008017	srl	98	75.751	ENSXMAG00000027598	SRL	63	75.751	Xiphophorus_maculatus
ENSPLAG00000008017	srl	99	98.035	ENSXMAG00000004625	srl	93	98.035	Xiphophorus_maculatus