EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSPLAG00000008323 (Gene tree)
Gene ID: 106964551
Gene Symbol: cmss1
Alias: -
Full Name: cms1 ribosomal small subunit homolog
Gene Type: protein_coding
Species: Poecilia_latipinna
Status: putative
Strand: Plus strand
Length: 36823 bases
Position: chrKQ547000.1:3857-40679
Accession: 106964551
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPLAP00000023179	CMS1	PF14617.6	1.7e-32	1	1
ENSPLAP00000023179	DEAD	PF00270.29	8.8e-07	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPLAT00000006582	-	1560	XM_015060138	ENSPLAP00000023179	286 (aa)	XP_014915624	UPI00072E594A

Gene Model

Click here to download ENSPLAG00000008323's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPLAG00000008323's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPLAG00000008323	cmss1	100	51.748	ENSG00000184220	CMSS1	98	66.250	Homo_sapiens
ENSPLAG00000008323	cmss1	94	71.269	ENSAPOG00000010604	cmss1	96	71.264	Acanthochromis_polyacanthus
ENSPLAG00000008323	cmss1	88	55.906	ENSAMEG00000004092	CMSS1	78	62.069	Ailuropoda_melanoleuca
ENSPLAG00000008323	cmss1	92	74.621	ENSACIG00000021854	cmss1	98	74.713	Amphilophus_citrinellus
ENSPLAG00000008323	cmss1	100	71.034	ENSAOCG00000013361	cmss1	100	75.945	Amphiprion_ocellaris
ENSPLAG00000008323	cmss1	100	74.227	ENSAPEG00000005829	cmss1	100	76.289	Amphiprion_percula
ENSPLAG00000008323	cmss1	100	72.414	ENSATEG00000008209	cmss1	100	75.172	Anabas_testudineus
ENSPLAG00000008323	cmss1	71	59.901	ENSAPLG00000010542	CMSS1	88	59.901	Anas_platyrhynchos
ENSPLAG00000008323	cmss1	97	52.536	ENSACAG00000011065	CMSS1	74	61.881	Anolis_carolinensis
ENSPLAG00000008323	cmss1	100	52.098	ENSANAG00000023565	CMSS1	100	52.098	Aotus_nancymaae
ENSPLAG00000008323	cmss1	100	75.685	ENSACLG00000027294	cmss1	100	77.740	Astatotilapia_calliptera
ENSPLAG00000008323	cmss1	100	53.535	ENSAMXG00000002046	cmss1	100	54.422	Astyanax_mexicanus
ENSPLAG00000008323	cmss1	100	53.497	ENSBTAG00000013663	CMSS1	100	50.000	Bos_taurus
ENSPLAG00000008323	cmss1	100	53.310	ENSCJAG00000000610	CMSS1	100	53.310	Callithrix_jacchus
ENSPLAG00000008323	cmss1	71	61.881	ENSCAFG00000009230	CMSS1	73	61.881	Canis_familiaris
ENSPLAG00000008323	cmss1	71	59.901	ENSCAFG00020024156	-	63	59.901	Canis_lupus_dingo
ENSPLAG00000008323	cmss1	87	55.823	ENSCAFG00020009464	-	74	61.881	Canis_lupus_dingo
ENSPLAG00000008323	cmss1	71	62.871	ENSCHIG00000013003	CMSS1	73	62.871	Capra_hircus
ENSPLAG00000008323	cmss1	84	58.333	ENSTSYG00000009266	CMSS1	78	62.376	Carlito_syrichta
ENSPLAG00000008323	cmss1	65	56.452	ENSCAPG00000013584	CMSS1	87	56.452	Cavia_aperea
ENSPLAG00000008323	cmss1	100	54.861	ENSCPOG00000014680	CMSS1	100	53.659	Cavia_porcellus
ENSPLAG00000008323	cmss1	100	52.797	ENSCCAG00000034685	CMSS1	100	49.342	Cebus_capucinus
ENSPLAG00000008323	cmss1	100	52.098	ENSCATG00000031980	CMSS1	100	51.748	Cercocebus_atys
ENSPLAG00000008323	cmss1	70	62.000	ENSCLAG00000011241	CMSS1	87	62.376	Chinchilla_lanigera
ENSPLAG00000008323	cmss1	71	62.871	ENSCSAG00000006024	CMSS1	82	62.871	Chlorocebus_sabaeus
ENSPLAG00000008323	cmss1	100	40.070	ENSCHOG00000012098	CMSS1	100	39.721	Choloepus_hoffmanni
ENSPLAG00000008323	cmss1	65	45.455	ENSCING00000014848	-	99	45.455	Ciona_intestinalis
ENSPLAG00000008323	cmss1	100	52.098	ENSCANG00000031337	CMSS1	100	51.748	Colobus_angolensis_palliatus
ENSPLAG00000008323	cmss1	100	50.523	ENSCGRG00001014305	Cmss1	100	48.966	Cricetulus_griseus_chok1gshd
ENSPLAG00000008323	cmss1	71	60.891	ENSCGRG00000006722	Cmss1	79	60.891	Cricetulus_griseus_crigri
ENSPLAG00000008323	cmss1	100	67.347	ENSCSEG00000004958	cmss1	100	68.707	Cynoglossus_semilaevis
ENSPLAG00000008323	cmss1	100	81.250	ENSCVAG00000005039	cmss1	100	82.292	Cyprinodon_variegatus
ENSPLAG00000008323	cmss1	100	57.679	ENSDARG00000112579	cmss1	100	58.703	Danio_rerio
ENSPLAG00000008323	cmss1	71	61.881	ENSDNOG00000040418	CMSS1	73	61.881	Dasypus_novemcinctus
ENSPLAG00000008323	cmss1	100	52.797	ENSDORG00000010461	Cmss1	100	52.613	Dipodomys_ordii
ENSPLAG00000008323	cmss1	70	61.500	ENSEASG00005010966	CMSS1	92	61.881	Equus_asinus_asinus
ENSPLAG00000008323	cmss1	70	61.000	ENSECAG00000015662	CMSS1	89	61.386	Equus_caballus
ENSPLAG00000008323	cmss1	70	43.500	ENSEEUG00000007624	-	73	44.059	Erinaceus_europaeus
ENSPLAG00000008323	cmss1	100	58.416	ENSELUG00000019459	cmss1	100	59.736	Esox_lucius
ENSPLAG00000008323	cmss1	100	54.514	ENSFCAG00000044577	CMSS1	100	52.265	Felis_catus
ENSPLAG00000008323	cmss1	71	59.406	ENSFALG00000005816	CMSS1	85	59.406	Ficedula_albicollis
ENSPLAG00000008323	cmss1	71	62.871	ENSFDAG00000012577	CMSS1	89	62.871	Fukomys_damarensis
ENSPLAG00000008323	cmss1	81	86.207	ENSFHEG00000012008	cmss1	94	86.463	Fundulus_heteroclitus
ENSPLAG00000008323	cmss1	99	64.931	ENSGMOG00000016729	cmss1	100	63.542	Gadus_morhua
ENSPLAG00000008323	cmss1	71	60.891	ENSGALG00000015267	CMSS1	77	60.891	Gallus_gallus
ENSPLAG00000008323	cmss1	94	86.296	ENSGAFG00000021217	cmss1	97	85.171	Gambusia_affinis
ENSPLAG00000008323	cmss1	99	67.361	ENSGACG00000002798	cmss1	100	66.667	Gasterosteus_aculeatus
ENSPLAG00000008323	cmss1	98	52.313	ENSGAGG00000019861	CMSS1	79	62.871	Gopherus_agassizii
ENSPLAG00000008323	cmss1	71	62.376	ENSGGOG00000014125	CMSS1	77	62.376	Gorilla_gorilla
ENSPLAG00000008323	cmss1	100	76.027	ENSHBUG00000008431	cmss1	100	76.712	Haplochromis_burtoni
ENSPLAG00000008323	cmss1	70	61.500	ENSHGLG00000019481	CMSS1	92	59.130	Heterocephalus_glaber_female
ENSPLAG00000008323	cmss1	70	61.500	ENSHGLG00100010314	CMSS1	90	59.130	Heterocephalus_glaber_male
ENSPLAG00000008323	cmss1	100	66.330	ENSHCOG00000003222	cmss1	100	66.330	Hippocampus_comes
ENSPLAG00000008323	cmss1	100	58.703	ENSIPUG00000011591	cmss1	100	58.219	Ictalurus_punctatus
ENSPLAG00000008323	cmss1	100	52.098	ENSSTOG00000019366	CMSS1	100	51.568	Ictidomys_tridecemlineatus
ENSPLAG00000008323	cmss1	100	53.472	ENSJJAG00000014894	Cmss1	96	57.709	Jaculus_jaculus
ENSPLAG00000008323	cmss1	94	65.799	ENSKMAG00000002390	cmss1	96	63.707	Kryptolebias_marmoratus
ENSPLAG00000008323	cmss1	71	76.471	ENSLBEG00000006298	cmss1	83	76.471	Labrus_bergylta
ENSPLAG00000008323	cmss1	71	63.366	ENSLACG00000009293	CMSS1	88	63.366	Latimeria_chalumnae
ENSPLAG00000008323	cmss1	100	53.265	ENSLOCG00000009391	cmss1	100	51.379	Lepisosteus_oculatus
ENSPLAG00000008323	cmss1	70	62.500	ENSLAFG00000017509	CMSS1	89	62.871	Loxodonta_africana
ENSPLAG00000008323	cmss1	100	51.748	ENSMFAG00000045006	CMSS1	100	51.399	Macaca_fascicularis
ENSPLAG00000008323	cmss1	100	51.399	ENSMMUG00000002939	CMSS1	100	51.049	Macaca_mulatta
ENSPLAG00000008323	cmss1	100	51.748	ENSMNEG00000031315	CMSS1	100	51.399	Macaca_nemestrina
ENSPLAG00000008323	cmss1	100	51.748	ENSMLEG00000033660	CMSS1	100	51.399	Mandrillus_leucophaeus
ENSPLAG00000008323	cmss1	100	75.601	ENSMAMG00000017176	cmss1	100	76.289	Mastacembelus_armatus
ENSPLAG00000008323	cmss1	100	75.685	ENSMZEG00005021886	cmss1	100	77.740	Maylandia_zebra
ENSPLAG00000008323	cmss1	71	60.891	ENSMGAG00000014360	CMSS1	89	60.891	Meleagris_gallopavo
ENSPLAG00000008323	cmss1	100	37.631	ENSMAUG00000020609	Cmss1	100	38.194	Mesocricetus_auratus
ENSPLAG00000008323	cmss1	100	53.819	ENSMICG00000048977	CMSS1	100	50.847	Microcebus_murinus
ENSPLAG00000008323	cmss1	100	51.186	ENSMOCG00000021937	Cmss1	100	51.186	Microtus_ochrogaster
ENSPLAG00000008323	cmss1	71	77.833	ENSMMOG00000019794	cmss1	97	66.406	Mola_mola
ENSPLAG00000008323	cmss1	95	53.676	ENSMODG00000002275	CMSS1	76	63.366	Monodelphis_domestica
ENSPLAG00000008323	cmss1	100	73.469	ENSMALG00000004250	cmss1	100	73.379	Monopterus_albus
ENSPLAG00000008323	cmss1	100	53.497	MGP_CAROLIEiJ_G0020824	Cmss1	100	51.748	Mus_caroli
ENSPLAG00000008323	cmss1	100	53.147	ENSMUSG00000022748	Cmss1	100	51.399	Mus_musculus
ENSPLAG00000008323	cmss1	100	52.381	MGP_PahariEiJ_G0016524	Cmss1	100	51.399	Mus_pahari
ENSPLAG00000008323	cmss1	100	52.797	MGP_SPRETEiJ_G0021724	Cmss1	100	51.049	Mus_spretus
ENSPLAG00000008323	cmss1	70	61.809	ENSMPUG00000011324	CMSS1	78	62.189	Mustela_putorius_furo
ENSPLAG00000008323	cmss1	70	61.881	ENSMLUG00000001131	CMSS1	78	62.255	Myotis_lucifugus
ENSPLAG00000008323	cmss1	100	50.350	ENSNGAG00000020316	Cmss1	100	51.211	Nannospalax_galili
ENSPLAG00000008323	cmss1	100	75.685	ENSNBRG00000003095	cmss1	100	77.740	Neolamprologus_brichardi
ENSPLAG00000008323	cmss1	100	52.448	ENSNLEG00000034172	CMSS1	100	52.098	Nomascus_leucogenys
ENSPLAG00000008323	cmss1	71	53.465	ENSMEUG00000014505	CMSS1	89	53.465	Notamacropus_eugenii
ENSPLAG00000008323	cmss1	100	52.613	ENSOPRG00000002986	CMSS1	100	51.916	Ochotona_princeps
ENSPLAG00000008323	cmss1	100	46.853	ENSODEG00000009446	-	100	44.406	Octodon_degus
ENSPLAG00000008323	cmss1	100	46.853	ENSODEG00000001853	-	100	46.503	Octodon_degus
ENSPLAG00000008323	cmss1	100	53.472	ENSODEG00000005226	-	100	52.448	Octodon_degus
ENSPLAG00000008323	cmss1	100	51.042	ENSODEG00000003558	-	75	60.891	Octodon_degus
ENSPLAG00000008323	cmss1	91	80.460	ENSONIG00000006678	cmss1	99	80.843	Oreochromis_niloticus
ENSPLAG00000008323	cmss1	95	51.838	ENSOANG00000007529	CMSS1	87	60.396	Ornithorhynchus_anatinus
ENSPLAG00000008323	cmss1	87	56.627	ENSOCUG00000025366	CMSS1	73	62.376	Oryctolagus_cuniculus
ENSPLAG00000008323	cmss1	100	73.010	ENSORLG00000020340	cmss1	100	72.318	Oryzias_latipes
ENSPLAG00000008323	cmss1	74	73.239	ENSORLG00020012235	cmss1	90	73.239	Oryzias_latipes_hni
ENSPLAG00000008323	cmss1	93	63.197	ENSORLG00015015551	cmss1	76	72.906	Oryzias_latipes_hsok
ENSPLAG00000008323	cmss1	100	72.603	ENSOMEG00000012555	cmss1	100	74.315	Oryzias_melastigma
ENSPLAG00000008323	cmss1	71	63.366	ENSOGAG00000002045	CMSS1	89	63.366	Otolemur_garnettii
ENSPLAG00000008323	cmss1	71	62.562	ENSOARG00000017899	CMSS1	70	62.562	Ovis_aries
ENSPLAG00000008323	cmss1	71	62.376	ENSPPAG00000038515	CMSS1	74	62.376	Pan_paniscus
ENSPLAG00000008323	cmss1	100	54.514	ENSPPRG00000016767	CMSS1	100	52.797	Panthera_pardus
ENSPLAG00000008323	cmss1	100	54.167	ENSPTIG00000018274	CMSS1	100	52.448	Panthera_tigris_altaica
ENSPLAG00000008323	cmss1	100	52.098	ENSPTRG00000015157	CMSS1	100	51.748	Pan_troglodytes
ENSPLAG00000008323	cmss1	71	62.871	ENSPANG00000019980	CMSS1	80	62.871	Papio_anubis
ENSPLAG00000008323	cmss1	95	61.255	ENSPKIG00000012609	cmss1	96	62.357	Paramormyrops_kingsleyae
ENSPLAG00000008323	cmss1	71	62.376	ENSPSIG00000003849	CMSS1	88	62.376	Pelodiscus_sinensis
ENSPLAG00000008323	cmss1	71	75.490	ENSPMGG00000010286	cmss1	88	75.490	Periophthalmus_magnuspinnatus
ENSPLAG00000008323	cmss1	100	51.916	ENSPEMG00000016384	Cmss1	100	51.748	Peromyscus_maniculatus_bairdii
ENSPLAG00000008323	cmss1	71	50.000	ENSPMAG00000001146	cmss1	99	50.246	Petromyzon_marinus
ENSPLAG00000008323	cmss1	71	61.881	ENSPCIG00000015656	CMSS1	77	61.881	Phascolarctos_cinereus
ENSPLAG00000008323	cmss1	100	99.650	ENSPFOG00000016849	cmss1	100	99.650	Poecilia_formosa
ENSPLAG00000008323	cmss1	100	98.611	ENSPMEG00000021020	cmss1	100	98.611	Poecilia_mexicana
ENSPLAG00000008323	cmss1	97	94.245	ENSPREG00000007618	cmss1	95	94.245	Poecilia_reticulata
ENSPLAG00000008323	cmss1	100	53.472	ENSPPYG00000013606	CMSS1	100	52.265	Pongo_abelii
ENSPLAG00000008323	cmss1	100	54.861	ENSPCOG00000020035	CMSS1	100	50.508	Propithecus_coquereli
ENSPLAG00000008323	cmss1	100	45.804	ENSPVAG00000017031	CMSS1	100	44.948	Pteropus_vampyrus
ENSPLAG00000008323	cmss1	91	75.564	ENSPNYG00000013428	cmss1	97	77.820	Pundamilia_nyererei
ENSPLAG00000008323	cmss1	100	57.288	ENSPNAG00000007912	cmss1	100	56.081	Pygocentrus_nattereri
ENSPLAG00000008323	cmss1	71	62.376	ENSRNOG00000027888	Cmss1	79	62.376	Rattus_norvegicus
ENSPLAG00000008323	cmss1	100	51.399	ENSRBIG00000037931	CMSS1	100	51.399	Rhinopithecus_bieti
ENSPLAG00000008323	cmss1	100	51.399	ENSRROG00000042910	CMSS1	100	51.399	Rhinopithecus_roxellana
ENSPLAG00000008323	cmss1	84	58.333	ENSSBOG00000030980	CMSS1	77	62.376	Saimiri_boliviensis_boliviensis
ENSPLAG00000008323	cmss1	71	62.871	ENSSHAG00000009321	CMSS1	80	62.871	Sarcophilus_harrisii
ENSPLAG00000008323	cmss1	100	62.069	ENSSFOG00015001509	cmss1	100	60.678	Scleropages_formosus
ENSPLAG00000008323	cmss1	100	75.000	ENSSMAG00000001653	cmss1	100	76.712	Scophthalmus_maximus
ENSPLAG00000008323	cmss1	100	77.931	ENSSDUG00000007719	cmss1	100	79.310	Seriola_dumerili
ENSPLAG00000008323	cmss1	92	74.170	ENSSLDG00000012300	cmss1	91	74.349	Seriola_lalandi_dorsalis
ENSPLAG00000008323	cmss1	100	44.755	ENSSARG00000003584	CMSS1	100	44.056	Sorex_araneus
ENSPLAG00000008323	cmss1	71	60.891	ENSSPUG00000003865	CMSS1	89	60.891	Sphenodon_punctatus
ENSPLAG00000008323	cmss1	96	74.453	ENSSPAG00000019182	cmss1	78	73.864	Stegastes_partitus
ENSPLAG00000008323	cmss1	100	53.472	ENSSSCG00000011970	CMSS1	100	51.568	Sus_scrofa
ENSPLAG00000008323	cmss1	71	59.406	ENSTGUG00000013635	CMSS1	88	59.406	Taeniopygia_guttata
ENSPLAG00000008323	cmss1	100	65.385	ENSTRUG00000015265	cmss1	100	66.084	Takifugu_rubripes
ENSPLAG00000008323	cmss1	71	70.443	ENSTNIG00000002880	cmss1	83	67.249	Tetraodon_nigroviridis
ENSPLAG00000008323	cmss1	100	37.762	ENSTBEG00000016722	CMSS1	100	36.014	Tupaia_belangeri
ENSPLAG00000008323	cmss1	100	51.568	ENSTTRG00000001562	CMSS1	100	50.690	Tursiops_truncatus
ENSPLAG00000008323	cmss1	71	62.871	ENSUAMG00000024209	CMSS1	91	62.871	Ursus_americanus
ENSPLAG00000008323	cmss1	71	62.376	ENSUMAG00000001983	CMSS1	78	62.376	Ursus_maritimus
ENSPLAG00000008323	cmss1	56	60.625	ENSVPAG00000000263	CMSS1	57	60.625	Vicugna_pacos
ENSPLAG00000008323	cmss1	70	61.500	ENSVVUG00000021647	-	82	61.881	Vulpes_vulpes
ENSPLAG00000008323	cmss1	71	60.891	ENSVVUG00000007776	-	80	60.891	Vulpes_vulpes
ENSPLAG00000008323	cmss1	100	52.962	ENSXETG00000011858	cmss1	100	50.000	Xenopus_tropicalis
ENSPLAG00000008323	cmss1	95	87.546	ENSXCOG00000018724	cmss1	89	79.422	Xiphophorus_couchianus
ENSPLAG00000008323	cmss1	93	88.015	ENSXMAG00000011243	cmss1	98	79.422	Xiphophorus_maculatus