EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSPLAG00000008936 (Gene tree)
Gene ID: 106961856
Gene Symbol: larp1
Alias: -
Full Name: La ribonucleoprotein domain family member 1
Gene Type: protein_coding
Species: Poecilia_latipinna
Status: putative
Strand: Minus strand
Length: 59158 bases
Position: chrKQ546658.1:42728-101885
Accession: 106961856
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPLAP00000006721	La	PF05383.17	4.8e-20	1	1
ENSPLAP00000006729	La	PF05383.17	4.9e-20	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPLAT00000005763	-	5640	XM_015055918	ENSPLAP00000006729	1092 (aa)	XP_014911404	UPI00072DADDC
ENSPLAT00000005778	-	5568	XM_015055919	ENSPLAP00000006721	1068 (aa)	XP_014911405	UPI00072E5A99

Gene Model

Click here to download ENSPLAG00000008936's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPLAG00000008936's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSPLAG00000008936	larp1	100	50.401	ENSPLAG00000007115	larp1b	87	54.230

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPLAG00000008936	larp1	85	68.220	ENSG00000155506	LARP1	90	81.212	Homo_sapiens
ENSPLAG00000008936	larp1	90	94.118	ENSAPOG00000020685	larp1	98	96.226	Acanthochromis_polyacanthus
ENSPLAG00000008936	larp1	85	68.493	ENSAMEG00000016673	LARP1	96	68.969	Ailuropoda_melanoleuca
ENSPLAG00000008936	larp1	100	75.482	ENSACIG00000012994	larp1	100	75.115	Amphilophus_citrinellus
ENSPLAG00000008936	larp1	79	86.316	ENSAOCG00000007792	larp1	100	85.965	Amphiprion_ocellaris
ENSPLAG00000008936	larp1	100	85.436	ENSAPEG00000022246	larp1	100	85.065	Amphiprion_percula
ENSPLAG00000008936	larp1	97	84.422	ENSATEG00000013523	larp1	100	81.720	Anabas_testudineus
ENSPLAG00000008936	larp1	82	71.397	ENSAPLG00000007559	LARP1	99	71.116	Anas_platyrhynchos
ENSPLAG00000008936	larp1	88	68.122	ENSACAG00000004071	LARP1	97	69.503	Anolis_carolinensis
ENSPLAG00000008936	larp1	85	68.076	ENSANAG00000029949	LARP1	96	66.172	Aotus_nancymaae
ENSPLAG00000008936	larp1	100	83.865	ENSACLG00000015256	larp1	99	85.671	Astatotilapia_calliptera
ENSPLAG00000008936	larp1	96	74.859	ENSAMXG00000000859	larp1	98	75.264	Astyanax_mexicanus
ENSPLAG00000008936	larp1	96	63.661	ENSBTAG00000008443	LARP1	97	63.686	Bos_taurus
ENSPLAG00000008936	larp1	96	62.919	ENSCJAG00000004454	LARP1	97	62.862	Callithrix_jacchus
ENSPLAG00000008936	larp1	85	68.704	ENSCAFG00000017639	LARP1	97	68.863	Canis_familiaris
ENSPLAG00000008936	larp1	79	70.353	ENSCAFG00020023860	LARP1	95	70.541	Canis_lupus_dingo
ENSPLAG00000008936	larp1	96	64.405	ENSCHIG00000014414	LARP1	97	62.953	Capra_hircus
ENSPLAG00000008936	larp1	87	68.313	ENSTSYG00000013732	LARP1	96	67.603	Carlito_syrichta
ENSPLAG00000008936	larp1	76	69.461	ENSCAPG00000013865	LARP1	83	67.668	Cavia_aperea
ENSPLAG00000008936	larp1	85	67.983	ENSCPOG00000003377	LARP1	96	68.977	Cavia_porcellus
ENSPLAG00000008936	larp1	96	62.557	ENSCCAG00000025201	LARP1	97	63.678	Cebus_capucinus
ENSPLAG00000008936	larp1	96	62.268	ENSCATG00000030675	LARP1	97	62.605	Cercocebus_atys
ENSPLAG00000008936	larp1	88	67.175	ENSCLAG00000012755	LARP1	96	67.412	Chinchilla_lanigera
ENSPLAG00000008936	larp1	78	69.067	ENSCSAG00000010800	LARP1	95	68.949	Chlorocebus_sabaeus
ENSPLAG00000008936	larp1	83	65.593	ENSCHOG00000012716	LARP1	88	65.436	Choloepus_hoffmanni
ENSPLAG00000008936	larp1	91	70.363	ENSCPBG00000002173	LARP1	90	72.384	Chrysemys_picta_bellii
ENSPLAG00000008936	larp1	84	68.936	ENSCANG00000037418	LARP1	90	68.623	Colobus_angolensis_palliatus
ENSPLAG00000008936	larp1	98	63.899	ENSCGRG00001016913	Larp1	97	64.885	Cricetulus_griseus_chok1gshd
ENSPLAG00000008936	larp1	84	65.739	ENSCGRG00000009916	Larp1	99	65.739	Cricetulus_griseus_crigri
ENSPLAG00000008936	larp1	100	83.010	ENSCSEG00000016431	larp1	100	82.949	Cynoglossus_semilaevis
ENSPLAG00000008936	larp1	99	89.568	ENSCVAG00000022687	larp1	100	87.685	Cyprinodon_variegatus
ENSPLAG00000008936	larp1	92	73.151	ENSDARG00000101722	larp1	93	74.685	Danio_rerio
ENSPLAG00000008936	larp1	99	62.212	ENSDNOG00000012073	LARP1	97	63.437	Dasypus_novemcinctus
ENSPLAG00000008936	larp1	87	64.873	ENSDORG00000002897	Larp1	95	67.573	Dipodomys_ordii
ENSPLAG00000008936	larp1	81	69.290	ENSETEG00000020251	LARP1	100	69.256	Echinops_telfairi
ENSPLAG00000008936	larp1	96	63.288	ENSEASG00005001070	LARP1	97	63.777	Equus_asinus_asinus
ENSPLAG00000008936	larp1	96	63.288	ENSECAG00000017002	LARP1	78	64.158	Equus_caballus
ENSPLAG00000008936	larp1	82	66.339	ENSEEUG00000001065	LARP1	96	66.230	Erinaceus_europaeus
ENSPLAG00000008936	larp1	99	74.771	ENSELUG00000019403	larp1	98	76.560	Esox_lucius
ENSPLAG00000008936	larp1	96	62.906	ENSFCAG00000000592	LARP1	97	63.455	Felis_catus
ENSPLAG00000008936	larp1	78	72.328	ENSFALG00000008335	LARP1	95	72.615	Ficedula_albicollis
ENSPLAG00000008936	larp1	84	69.149	ENSFDAG00000021125	LARP1	96	69.050	Fukomys_damarensis
ENSPLAG00000008936	larp1	63	81.525	ENSFHEG00000020307	larp1	97	82.258	Fundulus_heteroclitus
ENSPLAG00000008936	larp1	99	65.963	ENSGALG00000040109	LARP1	94	70.682	Gallus_gallus
ENSPLAG00000008936	larp1	99	66.788	ENSGAGG00000025113	LARP1	93	73.818	Gopherus_agassizii
ENSPLAG00000008936	larp1	86	67.430	ENSGGOG00000006048	LARP1	91	67.786	Gorilla_gorilla
ENSPLAG00000008936	larp1	100	84.432	ENSHBUG00000020762	larp1	99	86.210	Haplochromis_burtoni
ENSPLAG00000008936	larp1	99	62.724	ENSHGLG00000006267	LARP1	97	63.804	Heterocephalus_glaber_female
ENSPLAG00000008936	larp1	88	58.221	ENSHGLG00100003395	-	88	56.965	Heterocephalus_glaber_male
ENSPLAG00000008936	larp1	87	67.353	ENSHGLG00100014230	-	96	68.763	Heterocephalus_glaber_male
ENSPLAG00000008936	larp1	87	92.982	ENSHCOG00000010786	larp1	96	94.373	Hippocampus_comes
ENSPLAG00000008936	larp1	88	76.366	ENSIPUG00000019105	Larp1	95	74.265	Ictalurus_punctatus
ENSPLAG00000008936	larp1	84	68.375	ENSSTOG00000005678	LARP1	95	67.059	Ictidomys_tridecemlineatus
ENSPLAG00000008936	larp1	96	60.784	ENSJJAG00000016950	Larp1	97	60.504	Jaculus_jaculus
ENSPLAG00000008936	larp1	100	85.622	ENSKMAG00000018468	larp1	99	87.602	Kryptolebias_marmoratus
ENSPLAG00000008936	larp1	99	81.523	ENSLBEG00000027172	larp1	100	80.804	Labrus_bergylta
ENSPLAG00000008936	larp1	93	75.522	ENSLOCG00000012457	larp1	99	75.821	Lepisosteus_oculatus
ENSPLAG00000008936	larp1	98	62.364	ENSLAFG00000008991	LARP1	97	63.695	Loxodonta_africana
ENSPLAG00000008936	larp1	84	68.511	ENSMFAG00000031651	LARP1	90	68.517	Macaca_fascicularis
ENSPLAG00000008936	larp1	84	67.358	ENSMMUG00000009411	LARP1	96	67.249	Macaca_mulatta
ENSPLAG00000008936	larp1	80	69.066	ENSMNEG00000039294	LARP1	95	70.092	Macaca_nemestrina
ENSPLAG00000008936	larp1	84	68.617	ENSMLEG00000035142	LARP1	90	68.623	Mandrillus_leucophaeus
ENSPLAG00000008936	larp1	100	82.310	ENSMAMG00000021788	larp1	100	82.310	Mastacembelus_armatus
ENSPLAG00000008936	larp1	100	83.865	ENSMZEG00005009345	larp1	99	85.671	Maylandia_zebra
ENSPLAG00000008936	larp1	88	68.987	ENSMGAG00000005696	LARP1	96	71.459	Meleagris_gallopavo
ENSPLAG00000008936	larp1	99	63.205	ENSMAUG00000001385	Larp1	97	64.608	Mesocricetus_auratus
ENSPLAG00000008936	larp1	84	68.365	ENSMICG00000000837	LARP1	95	70.239	Microcebus_murinus
ENSPLAG00000008936	larp1	98	64.065	ENSMOCG00000008920	Larp1	97	64.728	Microtus_ochrogaster
ENSPLAG00000008936	larp1	94	61.823	ENSMMOG00000013364	larp1	99	63.153	Mola_mola
ENSPLAG00000008936	larp1	88	67.206	ENSMODG00000008663	LARP1	96	68.922	Monodelphis_domestica
ENSPLAG00000008936	larp1	100	84.091	ENSMALG00000017180	larp1	100	83.455	Monopterus_albus
ENSPLAG00000008936	larp1	98	64.410	MGP_CAROLIEiJ_G0016383	Larp1	97	65.005	Mus_caroli
ENSPLAG00000008936	larp1	98	64.501	ENSMUSG00000037331	Larp1	97	65.097	Mus_musculus
ENSPLAG00000008936	larp1	98	64.442	MGP_PahariEiJ_G0017518	Larp1	97	64.852	Mus_pahari
ENSPLAG00000008936	larp1	98	64.501	MGP_SPRETEiJ_G0017225	Larp1	97	65.097	Mus_spretus
ENSPLAG00000008936	larp1	82	59.539	ENSMPUG00000013564	LARP1	99	60.214	Mustela_putorius_furo
ENSPLAG00000008936	larp1	86	64.433	ENSMLUG00000002608	LARP1	97	65.608	Myotis_lucifugus
ENSPLAG00000008936	larp1	87	66.317	ENSNGAG00000001098	Larp1	95	67.865	Nannospalax_galili
ENSPLAG00000008936	larp1	90	85.026	ENSNBRG00000008963	larp1	98	85.436	Neolamprologus_brichardi
ENSPLAG00000008936	larp1	85	67.769	ENSNLEG00000016588	LARP1	96	66.885	Nomascus_leucogenys
ENSPLAG00000008936	larp1	87	64.008	ENSMEUG00000002957	LARP1	96	64.592	Notamacropus_eugenii
ENSPLAG00000008936	larp1	84	68.816	ENSOPRG00000013014	LARP1	96	69.083	Ochotona_princeps
ENSPLAG00000008936	larp1	85	68.388	ENSODEG00000010824	LARP1	96	68.763	Octodon_degus
ENSPLAG00000008936	larp1	99	81.603	ENSONIG00000017308	larp1	97	83.458	Oreochromis_niloticus
ENSPLAG00000008936	larp1	88	69.450	ENSOANG00000005096	LARP1	95	71.398	Ornithorhynchus_anatinus
ENSPLAG00000008936	larp1	99	63.186	ENSOCUG00000013066	LARP1	97	64.597	Oryctolagus_cuniculus
ENSPLAG00000008936	larp1	100	81.406	ENSORLG00000000824	larp1	100	81.314	Oryzias_latipes
ENSPLAG00000008936	larp1	100	81.742	ENSORLG00020022241	larp1	100	81.557	Oryzias_latipes_hni
ENSPLAG00000008936	larp1	100	82.063	ENSORLG00015007538	larp1	100	80.762	Oryzias_latipes_hsok
ENSPLAG00000008936	larp1	100	82.358	ENSOMEG00000003134	larp1	100	80.798	Oryzias_melastigma
ENSPLAG00000008936	larp1	87	67.490	ENSOGAG00000016750	LARP1	96	68.638	Otolemur_garnettii
ENSPLAG00000008936	larp1	84	68.162	ENSOARG00000009893	LARP1	97	67.766	Ovis_aries
ENSPLAG00000008936	larp1	85	68.220	ENSPPAG00000042993	LARP1	90	68.590	Pan_paniscus
ENSPLAG00000008936	larp1	85	67.932	ENSPPRG00000009780	LARP1	91	67.197	Panthera_pardus
ENSPLAG00000008936	larp1	85	68.220	ENSPTIG00000007013	LARP1	91	67.872	Panthera_tigris_altaica
ENSPLAG00000008936	larp1	96	61.724	ENSPTRG00000017447	LARP1	97	62.747	Pan_troglodytes
ENSPLAG00000008936	larp1	96	62.268	ENSPANG00000008080	LARP1	97	62.605	Papio_anubis
ENSPLAG00000008936	larp1	100	74.678	ENSPKIG00000010096	larp1	96	75.691	Paramormyrops_kingsleyae
ENSPLAG00000008936	larp1	97	67.235	ENSPKIG00000017153	-	99	67.685	Paramormyrops_kingsleyae
ENSPLAG00000008936	larp1	94	78.054	ENSPMGG00000011599	larp1	97	78.649	Periophthalmus_magnuspinnatus
ENSPLAG00000008936	larp1	87	65.935	ENSPEMG00000022523	Larp1	96	67.682	Peromyscus_maniculatus_bairdii
ENSPLAG00000008936	larp1	97	64.614	ENSPCIG00000019242	LARP1	89	65.088	Phascolarctos_cinereus
ENSPLAG00000008936	larp1	100	99.726	ENSPFOG00000005836	larp1	100	99.726	Poecilia_formosa
ENSPLAG00000008936	larp1	100	99.177	ENSPMEG00000013656	larp1	100	99.177	Poecilia_mexicana
ENSPLAG00000008936	larp1	89	97.732	ENSPREG00000005726	larp1	99	97.732	Poecilia_reticulata
ENSPLAG00000008936	larp1	84	66.490	ENSPCAG00000006407	LARP1	97	66.844	Procavia_capensis
ENSPLAG00000008936	larp1	85	60.603	ENSPCOG00000016949	LARP1	96	63.992	Propithecus_coquereli
ENSPLAG00000008936	larp1	96	63.505	ENSPVAG00000002262	LARP1	97	64.436	Pteropus_vampyrus
ENSPLAG00000008936	larp1	100	83.774	ENSPNYG00000007938	larp1	99	85.772	Pundamilia_nyererei
ENSPLAG00000008936	larp1	98	73.819	ENSPNAG00000021427	larp1	97	75.483	Pygocentrus_nattereri
ENSPLAG00000008936	larp1	87	65.762	ENSRNOG00000031544	Larp1	95	67.500	Rattus_norvegicus
ENSPLAG00000008936	larp1	84	68.617	ENSRBIG00000038005	LARP1	90	68.623	Rhinopithecus_bieti
ENSPLAG00000008936	larp1	85	68.288	ENSRROG00000034073	LARP1	95	70.208	Rhinopithecus_roxellana
ENSPLAG00000008936	larp1	88	66.633	ENSSBOG00000019816	LARP1	96	67.065	Saimiri_boliviensis_boliviensis
ENSPLAG00000008936	larp1	87	69.239	ENSSHAG00000011115	LARP1	96	70.311	Sarcophilus_harrisii
ENSPLAG00000008936	larp1	88	75.823	ENSSFOG00015020304	larp1	95	75.331	Scleropages_formosus
ENSPLAG00000008936	larp1	97	72.978	ENSSFOG00015018058	-	96	72.947	Scleropages_formosus
ENSPLAG00000008936	larp1	93	82.708	ENSSMAG00000007468	larp1	98	81.845	Scophthalmus_maximus
ENSPLAG00000008936	larp1	100	84.333	ENSSDUG00000000268	larp1	100	84.244	Seriola_dumerili
ENSPLAG00000008936	larp1	83	81.839	ENSSLDG00000016505	larp1	99	80.246	Seriola_lalandi_dorsalis
ENSPLAG00000008936	larp1	54	83.534	ENSSARG00000013907	-	83	83.600	Sorex_araneus
ENSPLAG00000008936	larp1	99	64.368	ENSSPUG00000012179	-	99	64.805	Sphenodon_punctatus
ENSPLAG00000008936	larp1	100	84.153	ENSSPAG00000003910	larp1	100	84.503	Stegastes_partitus
ENSPLAG00000008936	larp1	96	62.658	ENSSSCG00000017069	LARP1	96	69.511	Sus_scrofa
ENSPLAG00000008936	larp1	84	71.152	ENSTGUG00000000704	LARP1	100	70.829	Taeniopygia_guttata
ENSPLAG00000008936	larp1	99	80.808	ENSTRUG00000009470	larp1	99	80.716	Takifugu_rubripes
ENSPLAG00000008936	larp1	81	68.066	ENSTBEG00000003381	LARP1	99	67.849	Tupaia_belangeri
ENSPLAG00000008936	larp1	87	66.838	ENSTTRG00000015934	LARP1	97	68.677	Tursiops_truncatus
ENSPLAG00000008936	larp1	96	62.816	ENSUAMG00000019334	LARP1	97	63.177	Ursus_americanus
ENSPLAG00000008936	larp1	84	67.484	ENSUMAG00000002934	LARP1	96	69.344	Ursus_maritimus
ENSPLAG00000008936	larp1	79	70.353	ENSVVUG00000004644	LARP1	95	70.541	Vulpes_vulpes
ENSPLAG00000008936	larp1	96	67.658	ENSXETG00000008413	larp1	99	66.111	Xenopus_tropicalis
ENSPLAG00000008936	larp1	87	93.377	ENSXCOG00000004022	larp1	99	93.377	Xiphophorus_couchianus
ENSPLAG00000008936	larp1	100	97.623	ENSXMAG00000018780	larp1	100	97.623	Xiphophorus_maculatus