EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSPLAG00000009332 (Gene tree)
Gene ID: 106954396
Gene Symbol: smg5
Alias: -
Full Name: SMG5%2C nonsense mediated mRNA decay factor
Gene Type: protein_coding
Species: Poecilia_latipinna
Status: putative
Strand: Plus strand
Length: 15663 bases
Position: chrKQ545969.1:40255-55917
Accession: 106954396
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPLAP00000007027	EST1	PF10374.9	5.1e-24	1	1
ENSPLAP00000007027	EST1_DNA_bind	PF10373.9	2.3e-42	1	1
ENSPLAP00000007027	PIN_4	PF13638.6	1.5e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPLAT00000005250	-	4911	XM_015043865	ENSPLAP00000007027	1113 (aa)	XP_014899351	UPI00072E45CA

Gene Model

Click here to download ENSPLAG00000009332's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPLAG00000009332's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPLAG00000009332	smg5	99	62.087	ENSG00000198952	SMG5	50	60.482	Homo_sapiens
ENSPLAG00000009332	smg5	100	88.820	ENSAPOG00000019690	smg5	100	88.110	Acanthochromis_polyacanthus
ENSPLAG00000009332	smg5	98	60.969	ENSAMEG00000014458	SMG5	91	77.363	Ailuropoda_melanoleuca
ENSPLAG00000009332	smg5	100	81.843	ENSACIG00000001353	smg5	99	82.021	Amphilophus_citrinellus
ENSPLAG00000009332	smg5	100	88.869	ENSAOCG00000019483	smg5	100	88.691	Amphiprion_ocellaris
ENSPLAG00000009332	smg5	100	88.691	ENSAPEG00000022949	smg5	100	88.691	Amphiprion_percula
ENSPLAG00000009332	smg5	100	86.655	ENSATEG00000005348	smg5	100	86.376	Anabas_testudineus
ENSPLAG00000009332	smg5	98	62.432	ENSAPLG00000010263	SMG5	100	61.101	Anas_platyrhynchos
ENSPLAG00000009332	smg5	99	62.097	ENSANAG00000032899	SMG5	93	75.792	Aotus_nancymaae
ENSPLAG00000009332	smg5	100	87.478	ENSACLG00000009311	smg5	100	87.744	Astatotilapia_calliptera
ENSPLAG00000009332	smg5	100	78.514	ENSAMXG00000024616	smg5	100	78.495	Astyanax_mexicanus
ENSPLAG00000009332	smg5	99	62.097	ENSBTAG00000009435	SMG5	50	60.037	Bos_taurus
ENSPLAG00000009332	smg5	89	50.363	ENSBTAG00000021747	-	85	50.363	Bos_taurus
ENSPLAG00000009332	smg5	99	62.097	ENSCJAG00000005684	SMG5	50	60.297	Callithrix_jacchus
ENSPLAG00000009332	smg5	99	61.511	ENSCAFG00000016839	SMG5	93	75.744	Canis_familiaris
ENSPLAG00000009332	smg5	99	61.511	ENSCAFG00020006061	SMG5	93	75.744	Canis_lupus_dingo
ENSPLAG00000009332	smg5	99	62.097	ENSCHIG00000007709	SMG5	50	60.409	Capra_hircus
ENSPLAG00000009332	smg5	89	50.868	ENSCHIG00000006323	-	93	50.868	Capra_hircus
ENSPLAG00000009332	smg5	95	47.642	ENSCAPG00000003631	SMG5	92	55.204	Cavia_aperea
ENSPLAG00000009332	smg5	99	61.918	ENSCPOG00000015696	SMG5	50	60.967	Cavia_porcellus
ENSPLAG00000009332	smg5	99	61.828	ENSCCAG00000027409	SMG5	51	59.369	Cebus_capucinus
ENSPLAG00000009332	smg5	99	61.998	ENSCATG00000030539	SMG5	50	60.297	Cercocebus_atys
ENSPLAG00000009332	smg5	99	61.918	ENSCLAG00000003983	SMG5	50	60.297	Chinchilla_lanigera
ENSPLAG00000009332	smg5	99	61.998	ENSCSAG00000002120	SMG5	50	60.297	Chlorocebus_sabaeus
ENSPLAG00000009332	smg5	51	75.451	ENSCHOG00000008741	-	57	75.451	Choloepus_hoffmanni
ENSPLAG00000009332	smg5	72	38.060	ENSCING00000008706	-	83	38.060	Ciona_intestinalis
ENSPLAG00000009332	smg5	99	59.322	ENSCANG00000029208	SMG5	50	55.000	Colobus_angolensis_palliatus
ENSPLAG00000009332	smg5	100	83.170	ENSCSEG00000014220	smg5	100	83.333	Cynoglossus_semilaevis
ENSPLAG00000009332	smg5	100	76.344	ENSCVAG00000000529	smg5	99	75.986	Cyprinodon_variegatus
ENSPLAG00000009332	smg5	100	77.758	ENSDARG00000041481	smg5	100	77.265	Danio_rerio
ENSPLAG00000009332	smg5	81	39.791	ENSDNOG00000039862	-	89	39.005	Dasypus_novemcinctus
ENSPLAG00000009332	smg5	88	78.836	ENSDNOG00000000051	SMG5	93	69.074	Dasypus_novemcinctus
ENSPLAG00000009332	smg5	99	62.444	ENSDORG00000010382	Smg5	50	60.967	Dipodomys_ordii
ENSPLAG00000009332	smg5	76	84.466	ENSETEG00000010336	SMG5	63	84.466	Echinops_telfairi
ENSPLAG00000009332	smg5	64	53.695	ENSEBUG00000003739	smg5	78	53.465	Eptatretus_burgeri
ENSPLAG00000009332	smg5	99	62.388	ENSEASG00005019122	SMG5	50	60.409	Equus_asinus_asinus
ENSPLAG00000009332	smg5	99	62.388	ENSECAG00000001389	SMG5	93	70.814	Equus_caballus
ENSPLAG00000009332	smg5	66	79.155	ENSEEUG00000012690	SMG5	74	78.249	Erinaceus_europaeus
ENSPLAG00000009332	smg5	100	80.548	ENSELUG00000012585	smg5	100	78.426	Esox_lucius
ENSPLAG00000009332	smg5	99	62.174	ENSFCAG00000011783	SMG5	50	59.740	Felis_catus
ENSPLAG00000009332	smg5	60	61.347	ENSFALG00000001166	-	66	79.012	Ficedula_albicollis
ENSPLAG00000009332	smg5	98	82.208	ENSFHEG00000013939	smg5	94	93.968	Fundulus_heteroclitus
ENSPLAG00000009332	smg5	100	76.491	ENSGMOG00000007310	smg5	100	76.930	Gadus_morhua
ENSPLAG00000009332	smg5	99	63.482	ENSGALG00000029918	-	99	62.544	Gallus_gallus
ENSPLAG00000009332	smg5	93	96.667	ENSGAFG00000021691	smg5	99	96.667	Gambusia_affinis
ENSPLAG00000009332	smg5	100	84.588	ENSGACG00000013142	smg5	100	83.614	Gasterosteus_aculeatus
ENSPLAG00000009332	smg5	99	61.998	ENSGGOG00000010932	SMG5	50	60.297	Gorilla_gorilla
ENSPLAG00000009332	smg5	100	87.467	ENSHBUG00000008654	smg5	100	88.000	Haplochromis_burtoni
ENSPLAG00000009332	smg5	99	61.305	ENSHGLG00000019152	SMG5	50	58.932	Heterocephalus_glaber_female
ENSPLAG00000009332	smg5	90	77.162	ENSHCOG00000010229	smg5	93	82.651	Hippocampus_comes
ENSPLAG00000009332	smg5	100	77.411	ENSIPUG00000006624	Smg5	100	76.664	Ictalurus_punctatus
ENSPLAG00000009332	smg5	99	62.186	ENSSTOG00000001780	SMG5	50	59.926	Ictidomys_tridecemlineatus
ENSPLAG00000009332	smg5	100	89.413	ENSKMAG00000014586	smg5	100	89.591	Kryptolebias_marmoratus
ENSPLAG00000009332	smg5	100	86.988	ENSLBEG00000002145	smg5	100	86.898	Labrus_bergylta
ENSPLAG00000009332	smg5	99	57.244	ENSLACG00000010521	SMG5	99	57.778	Latimeria_chalumnae
ENSPLAG00000009332	smg5	100	68.267	ENSLOCG00000008380	smg5	99	71.593	Lepisosteus_oculatus
ENSPLAG00000009332	smg5	99	61.704	ENSLAFG00000006241	SMG5	50	59.926	Loxodonta_africana
ENSPLAG00000009332	smg5	99	61.998	ENSMFAG00000045357	SMG5	50	60.297	Macaca_fascicularis
ENSPLAG00000009332	smg5	92	78.824	ENSMMUG00000000090	SMG5	94	75.964	Macaca_mulatta
ENSPLAG00000009332	smg5	99	61.909	ENSMNEG00000044425	SMG5	50	60.111	Macaca_nemestrina
ENSPLAG00000009332	smg5	99	56.978	ENSMLEG00000041192	SMG5	93	66.516	Mandrillus_leucophaeus
ENSPLAG00000009332	smg5	100	86.554	ENSMAMG00000010683	smg5	100	86.643	Mastacembelus_armatus
ENSPLAG00000009332	smg5	65	74.457	ENSMZEG00005016543	smg5	100	74.049	Maylandia_zebra
ENSPLAG00000009332	smg5	100	77.788	ENSMZEG00005015815	smg5	99	78.055	Maylandia_zebra
ENSPLAG00000009332	smg5	99	62.084	ENSMICG00000002257	SMG5	50	59.108	Microcebus_murinus
ENSPLAG00000009332	smg5	100	83.007	ENSMMOG00000017199	smg5	100	82.431	Mola_mola
ENSPLAG00000009332	smg5	73	34.562	ENSMODG00000004532	-	89	34.101	Monodelphis_domestica
ENSPLAG00000009332	smg5	71	35.467	ENSMODG00000004511	-	79	35.467	Monodelphis_domestica
ENSPLAG00000009332	smg5	71	35.310	ENSMODG00000004735	-	89	35.310	Monodelphis_domestica
ENSPLAG00000009332	smg5	72	33.846	ENSMODG00000010675	-	90	34.103	Monodelphis_domestica
ENSPLAG00000009332	smg5	100	85.116	ENSMALG00000010375	smg5	100	84.938	Monopterus_albus
ENSPLAG00000009332	smg5	99	62.478	MGP_CAROLIEiJ_G0025163	Smg5	100	88.268	Mus_caroli
ENSPLAG00000009332	smg5	99	62.410	ENSMUSG00000001415	Smg5	99	88.268	Mus_musculus
ENSPLAG00000009332	smg5	99	62.320	MGP_PahariEiJ_G0026606	Smg5	100	88.827	Mus_pahari
ENSPLAG00000009332	smg5	99	62.230	MGP_SPRETEiJ_G0026104	Smg5	100	88.268	Mus_spretus
ENSPLAG00000009332	smg5	94	60.247	ENSMPUG00000004546	SMG5	93	73.740	Mustela_putorius_furo
ENSPLAG00000009332	smg5	99	62.634	ENSMLUG00000008518	SMG5	50	59.926	Myotis_lucifugus
ENSPLAG00000009332	smg5	78	49.877	ENSNGAG00000012101	-	92	49.507	Nannospalax_galili
ENSPLAG00000009332	smg5	97	74.747	ENSNBRG00000004332	smg5	98	75.253	Neolamprologus_brichardi
ENSPLAG00000009332	smg5	99	62.266	ENSNLEG00000012439	SMG5	50	60.482	Nomascus_leucogenys
ENSPLAG00000009332	smg5	99	60.842	ENSMEUG00000012834	SMG5	50	57.749	Notamacropus_eugenii
ENSPLAG00000009332	smg5	99	62.701	ENSOPRG00000009152	SMG5	50	59.815	Ochotona_princeps
ENSPLAG00000009332	smg5	99	61.883	ENSODEG00000012237	SMG5	50	60.297	Octodon_degus
ENSPLAG00000009332	smg5	100	86.933	ENSONIG00000008632	smg5	100	87.022	Oreochromis_niloticus
ENSPLAG00000009332	smg5	77	46.020	ENSOCUG00000023338	-	90	46.020	Oryctolagus_cuniculus
ENSPLAG00000009332	smg5	100	85.000	ENSORLG00000016239	smg5	100	85.179	Oryzias_latipes
ENSPLAG00000009332	smg5	100	85.089	ENSORLG00020013127	smg5	100	85.179	Oryzias_latipes_hni
ENSPLAG00000009332	smg5	100	85.000	ENSORLG00015019014	smg5	100	85.446	Oryzias_latipes_hsok
ENSPLAG00000009332	smg5	84	84.910	ENSOMEG00000021330	smg5	92	84.803	Oryzias_melastigma
ENSPLAG00000009332	smg5	99	61.421	ENSOGAG00000004966	SMG5	50	59.184	Otolemur_garnettii
ENSPLAG00000009332	smg5	85	51.090	ENSOARG00000011963	-	87	51.090	Ovis_aries
ENSPLAG00000009332	smg5	99	62.007	ENSOARG00000005778	SMG5	50	60.409	Ovis_aries
ENSPLAG00000009332	smg5	99	61.998	ENSPPAG00000011996	SMG5	50	60.482	Pan_paniscus
ENSPLAG00000009332	smg5	98	61.918	ENSPPRG00000011901	SMG5	93	76.134	Panthera_pardus
ENSPLAG00000009332	smg5	97	58.379	ENSPTIG00000007892	SMG5	92	73.206	Panthera_tigris_altaica
ENSPLAG00000009332	smg5	86	78.371	ENSPTRG00000049282	-	83	77.465	Pan_troglodytes
ENSPLAG00000009332	smg5	99	61.998	ENSPTRG00000023925	SMG5	50	60.482	Pan_troglodytes
ENSPLAG00000009332	smg5	99	61.998	ENSPANG00000011201	SMG5	50	60.297	Papio_anubis
ENSPLAG00000009332	smg5	100	76.254	ENSPKIG00000009402	smg5	100	75.269	Paramormyrops_kingsleyae
ENSPLAG00000009332	smg5	100	72.178	ENSPMGG00000010465	smg5	100	71.811	Periophthalmus_magnuspinnatus
ENSPLAG00000009332	smg5	89	60.544	ENSPMAG00000000410	smg5	91	62.830	Petromyzon_marinus
ENSPLAG00000009332	smg5	99	61.386	ENSPCIG00000018938	SMG5	50	60.329	Phascolarctos_cinereus
ENSPLAG00000009332	smg5	100	99.461	ENSPFOG00000010191	smg5	100	99.461	Poecilia_formosa
ENSPLAG00000009332	smg5	100	99.191	ENSPMEG00000014105	smg5	100	99.191	Poecilia_mexicana
ENSPLAG00000009332	smg5	100	98.473	ENSPREG00000017713	smg5	100	98.473	Poecilia_reticulata
ENSPLAG00000009332	smg5	99	62.087	ENSPPYG00000000723	SMG5	50	60.482	Pongo_abelii
ENSPLAG00000009332	smg5	82	74.359	ENSPCAG00000008412	SMG5	74	78.889	Procavia_capensis
ENSPLAG00000009332	smg5	99	61.566	ENSPCOG00000004741	SMG5	51	59.740	Propithecus_coquereli
ENSPLAG00000009332	smg5	93	65.116	ENSPVAG00000016748	SMG5	93	63.122	Pteropus_vampyrus
ENSPLAG00000009332	smg5	100	87.157	ENSPNYG00000013397	smg5	100	87.600	Pundamilia_nyererei
ENSPLAG00000009332	smg5	100	78.910	ENSPNAG00000028363	smg5	100	78.265	Pygocentrus_nattereri
ENSPLAG00000009332	smg5	99	61.998	ENSRBIG00000027428	SMG5	50	60.297	Rhinopithecus_bieti
ENSPLAG00000009332	smg5	99	61.909	ENSRROG00000030035	SMG5	50	60.111	Rhinopithecus_roxellana
ENSPLAG00000009332	smg5	99	62.186	ENSSBOG00000033339	SMG5	50	60.111	Saimiri_boliviensis_boliviensis
ENSPLAG00000009332	smg5	98	60.581	ENSSHAG00000014163	SMG5	52	59.450	Sarcophilus_harrisii
ENSPLAG00000009332	smg5	70	35.821	ENSSHAG00000000561	-	92	34.803	Sarcophilus_harrisii
ENSPLAG00000009332	smg5	52	35.627	ENSSHAG00000000935	-	82	35.872	Sarcophilus_harrisii
ENSPLAG00000009332	smg5	71	41.076	ENSSHAG00000009572	-	80	40.831	Sarcophilus_harrisii
ENSPLAG00000009332	smg5	100	76.643	ENSSFOG00015024175	smg5	100	75.685	Scleropages_formosus
ENSPLAG00000009332	smg5	100	86.619	ENSSMAG00000013059	smg5	100	86.262	Scophthalmus_maximus
ENSPLAG00000009332	smg5	100	87.434	ENSSDUG00000007122	smg5	100	86.637	Seriola_dumerili
ENSPLAG00000009332	smg5	100	87.744	ENSSLDG00000011418	smg5	100	87.478	Seriola_lalandi_dorsalis
ENSPLAG00000009332	smg5	91	55.084	ENSSARG00000012484	SMG5	92	61.959	Sorex_araneus
ENSPLAG00000009332	smg5	94	61.330	ENSSPUG00000002260	SMG5	55	58.770	Sphenodon_punctatus
ENSPLAG00000009332	smg5	100	88.652	ENSSPAG00000014266	smg5	100	88.564	Stegastes_partitus
ENSPLAG00000009332	smg5	99	62.545	ENSSSCG00000006490	-	93	70.588	Sus_scrofa
ENSPLAG00000009332	smg5	57	46.994	ENSSSCG00000039308	-	51	49.722	Sus_scrofa
ENSPLAG00000009332	smg5	99	62.956	ENSTGUG00000003748	-	50	60.109	Taeniopygia_guttata
ENSPLAG00000009332	smg5	100	79.344	ENSTRUG00000012580	smg5	100	79.769	Takifugu_rubripes
ENSPLAG00000009332	smg5	100	79.152	ENSTNIG00000010303	smg5	100	78.338	Tetraodon_nigroviridis
ENSPLAG00000009332	smg5	52	83.744	ENSTBEG00000002777	SMG5	58	83.744	Tupaia_belangeri
ENSPLAG00000009332	smg5	99	61.296	ENSUAMG00000013721	SMG5	93	75.459	Ursus_americanus
ENSPLAG00000009332	smg5	92	74.515	ENSUMAG00000018041	SMG5	95	73.210	Ursus_maritimus
ENSPLAG00000009332	smg5	92	70.792	ENSVPAG00000009446	SMG5	93	66.429	Vicugna_pacos
ENSPLAG00000009332	smg5	99	61.960	ENSVVUG00000005887	SMG5	51	60.297	Vulpes_vulpes
ENSPLAG00000009332	smg5	79	52.252	ENSXETG00000033791	SMG5	99	51.242	Xenopus_tropicalis
ENSPLAG00000009332	smg5	91	97.838	ENSXCOG00000004379	smg5	99	98.901	Xiphophorus_couchianus
ENSPLAG00000009332	smg5	100	97.484	ENSXMAG00000013499	smg5	100	97.484	Xiphophorus_maculatus