EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSPLAG00000009405 (Gene tree)
Gene ID: 106942896
Gene Symbol: rbm42
Alias: -
Full Name: RNA binding motif protein 42
Gene Type: protein_coding
Species: Poecilia_latipinna
Status: putative
Strand: Plus strand
Length: 10273 bases
Position: chrKQ549718.1:2086-12358
Accession: 106942896
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPLAP00000007128	RRM_1	PF00076.22	7.7e-18	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPLAT00000005077	-	1922	XM_015026249	ENSPLAP00000007128	398 (aa)	XP_014881735	UPI00072DD998

Gene Model

Click here to download ENSPLAG00000009405's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPLAG00000009405's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPLAG00000009405	rbm42	100	80.583	ENSAPOG00000015109	rbm42	100	79.612	Acanthochromis_polyacanthus
ENSPLAG00000009405	rbm42	100	76.528	ENSACIG00000010771	rbm42	100	75.061	Amphilophus_citrinellus
ENSPLAG00000009405	rbm42	100	81.311	ENSAOCG00000008873	rbm42	100	79.854	Amphiprion_ocellaris
ENSPLAG00000009405	rbm42	100	81.311	ENSAPEG00000012051	rbm42	99	79.854	Amphiprion_percula
ENSPLAG00000009405	rbm42	100	79.853	ENSATEG00000000536	rbm42	100	77.887	Anabas_testudineus
ENSPLAG00000009405	rbm42	100	80.488	ENSACLG00000004988	rbm42	100	80.637	Astatotilapia_calliptera
ENSPLAG00000009405	rbm42	100	71.053	ENSAMXG00000016545	rbm42	100	71.154	Astyanax_mexicanus
ENSPLAG00000009405	rbm42	97	77.861	ENSCSEG00000010248	rbm42	100	76.309	Cynoglossus_semilaevis
ENSPLAG00000009405	rbm42	100	87.500	ENSCVAG00000015589	rbm42	100	88.235	Cyprinodon_variegatus
ENSPLAG00000009405	rbm42	100	65.796	ENSDARG00000039910	rbm42	100	69.024	Danio_rerio
ENSPLAG00000009405	rbm42	100	68.794	ENSELUG00000022403	rbm42	100	68.884	Esox_lucius
ENSPLAG00000009405	rbm42	66	87.313	ENSFHEG00000006764	rbm42	89	89.474	Fundulus_heteroclitus
ENSPLAG00000009405	rbm42	100	66.190	ENSGMOG00000012660	rbm42	100	69.193	Gadus_morhua
ENSPLAG00000009405	rbm42	77	97.720	ENSGAFG00000009059	rbm42	100	97.720	Gambusia_affinis
ENSPLAG00000009405	rbm42	100	75.669	ENSGACG00000004170	rbm42	100	73.659	Gasterosteus_aculeatus
ENSPLAG00000009405	rbm42	100	80.244	ENSHBUG00000011141	rbm42	100	80.392	Haplochromis_burtoni
ENSPLAG00000009405	rbm42	100	77.586	ENSHCOG00000021214	rbm42	100	77.586	Hippocampus_comes
ENSPLAG00000009405	rbm42	100	70.952	ENSIPUG00000022365	rbm42	99	69.928	Ictalurus_punctatus
ENSPLAG00000009405	rbm42	91	80.759	ENSKMAG00000015287	rbm42	99	78.862	Kryptolebias_marmoratus
ENSPLAG00000009405	rbm42	100	76.699	ENSLBEG00000017547	rbm42	100	75.426	Labrus_bergylta
ENSPLAG00000009405	rbm42	85	77.937	ENSLBEG00000004578	-	96	75.575	Labrus_bergylta
ENSPLAG00000009405	rbm42	100	66.981	ENSLOCG00000003368	rbm42	100	64.000	Lepisosteus_oculatus
ENSPLAG00000009405	rbm42	100	77.751	ENSMAMG00000006708	rbm42	100	79.218	Mastacembelus_armatus
ENSPLAG00000009405	rbm42	100	80.488	ENSMZEG00005025234	rbm42	100	80.637	Maylandia_zebra
ENSPLAG00000009405	rbm42	91	81.183	ENSMALG00000015720	rbm42	100	79.032	Monopterus_albus
ENSPLAG00000009405	rbm42	100	80.872	ENSONIG00000008029	rbm42	100	78.935	Oreochromis_niloticus
ENSPLAG00000009405	rbm42	100	61.429	ENSORLG00020022507	rbm42	100	61.667	Oryzias_latipes_hni
ENSPLAG00000009405	rbm42	100	78.676	ENSORLG00015000659	rbm42	100	78.676	Oryzias_latipes_hsok
ENSPLAG00000009405	rbm42	64	80.392	ENSOMEG00000014332	rbm42	94	80.392	Oryzias_melastigma
ENSPLAG00000009405	rbm42	100	71.292	ENSPKIG00000015165	rbm42	100	69.784	Paramormyrops_kingsleyae
ENSPLAG00000009405	rbm42	92	68.651	ENSPMGG00000003569	rbm42	100	98.571	Periophthalmus_magnuspinnatus
ENSPLAG00000009405	rbm42	57	52.991	ENSPMAG00000008633	rbm42	100	47.668	Petromyzon_marinus
ENSPLAG00000009405	rbm42	100	99.749	ENSPFOG00000007701	rbm42	100	99.749	Poecilia_formosa
ENSPLAG00000009405	rbm42	100	99.497	ENSPMEG00000010375	rbm42	100	99.497	Poecilia_mexicana
ENSPLAG00000009405	rbm42	100	99.497	ENSPREG00000018102	rbm42	100	99.497	Poecilia_reticulata
ENSPLAG00000009405	rbm42	100	80.196	ENSPNYG00000014460	rbm42	100	80.344	Pundamilia_nyererei
ENSPLAG00000009405	rbm42	100	67.126	ENSPNAG00000009961	rbm42	100	69.286	Pygocentrus_nattereri
ENSPLAG00000009405	rbm42	100	71.090	ENSSFOG00015019227	rbm42	100	69.668	Scleropages_formosus
ENSPLAG00000009405	rbm42	100	76.829	ENSSMAG00000011935	rbm42	100	74.878	Scophthalmus_maximus
ENSPLAG00000009405	rbm42	100	80.929	ENSSDUG00000004033	rbm42	100	79.462	Seriola_dumerili
ENSPLAG00000009405	rbm42	100	70.762	ENSSLDG00000009918	rbm42	100	83.529	Seriola_lalandi_dorsalis
ENSPLAG00000009405	rbm42	100	80.976	ENSSPAG00000019871	rbm42	100	79.854	Stegastes_partitus
ENSPLAG00000009405	rbm42	100	73.594	ENSTRUG00000024586	-	76	71.707	Takifugu_rubripes
ENSPLAG00000009405	rbm42	99	63.265	ENSTNIG00000011669	rbm42	100	63.182	Tetraodon_nigroviridis
ENSPLAG00000009405	rbm42	100	59.005	ENSXETG00000017599	rbm42	100	57.957	Xenopus_tropicalis
ENSPLAG00000009405	rbm42	100	97.257	ENSXMAG00000012827	rbm42	100	97.257	Xiphophorus_maculatus