EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSPLAG00000009820 (Gene tree)
Gene ID: 106937200
Gene Symbol: usb1
Alias: -
Full Name: U6 snRNA biogenesis phosphodiesterase 1
Gene Type: protein_coding
Species: Poecilia_latipinna
Status: putative
Strand: Plus strand
Length: 4853 bases
Position: chrKQ547599.1:74909-79761
Accession: 106937200
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPLAP00000023998	HVSL	PF09749.9	4.1e-66	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPLAT00000004506	-	1276	XM_015018599	ENSPLAP00000023998	278 (aa)	XP_014874085	UPI00072EB0BA

Gene Model

Click here to download ENSPLAG00000009820's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPLAG00000009820's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPLAG00000009820	usb1	82	51.754	ENSG00000103005	USB1	100	52.558	Homo_sapiens
ENSPLAG00000009820	usb1	99	71.831	ENSAPOG00000011942	usb1	100	71.831	Acanthochromis_polyacanthus
ENSPLAG00000009820	usb1	84	51.282	ENSAMEG00000017205	USB1	98	48.913	Ailuropoda_melanoleuca
ENSPLAG00000009820	usb1	85	72.269	ENSACIG00000012234	usb1	100	67.266	Amphilophus_citrinellus
ENSPLAG00000009820	usb1	99	73.852	ENSAOCG00000014831	usb1	99	73.852	Amphiprion_ocellaris
ENSPLAG00000009820	usb1	99	73.145	ENSAPEG00000000296	usb1	99	73.145	Amphiprion_percula
ENSPLAG00000009820	usb1	99	72.242	ENSATEG00000009348	usb1	99	72.242	Anabas_testudineus
ENSPLAG00000009820	usb1	81	54.867	ENSAPLG00000002756	USB1	100	54.867	Anas_platyrhynchos
ENSPLAG00000009820	usb1	82	51.528	ENSACAG00000015481	USB1	100	51.528	Anolis_carolinensis
ENSPLAG00000009820	usb1	82	51.316	ENSANAG00000035640	USB1	98	46.931	Aotus_nancymaae
ENSPLAG00000009820	usb1	91	71.937	ENSACLG00000020586	usb1	100	69.825	Astatotilapia_calliptera
ENSPLAG00000009820	usb1	81	65.333	ENSAMXG00000040146	usb1	95	56.552	Astyanax_mexicanus
ENSPLAG00000009820	usb1	99	48.188	ENSBTAG00000015758	USB1	98	48.188	Bos_taurus
ENSPLAG00000009820	usb1	82	52.193	ENSCJAG00000011733	USB1	98	48.188	Callithrix_jacchus
ENSPLAG00000009820	usb1	99	46.545	ENSCAFG00000008556	USB1	71	47.273	Canis_familiaris
ENSPLAG00000009820	usb1	99	47.636	ENSCAFG00020009263	USB1	98	47.636	Canis_lupus_dingo
ENSPLAG00000009820	usb1	99	47.292	ENSCHIG00000024290	USB1	98	47.292	Capra_hircus
ENSPLAG00000009820	usb1	82	50.877	ENSTSYG00000006997	USB1	98	47.464	Carlito_syrichta
ENSPLAG00000009820	usb1	81	42.222	ENSCAPG00000009057	USB1	96	42.222	Cavia_aperea
ENSPLAG00000009820	usb1	99	47.826	ENSCPOG00000014325	USB1	98	47.826	Cavia_porcellus
ENSPLAG00000009820	usb1	82	51.754	ENSCCAG00000022132	USB1	98	47.292	Cebus_capucinus
ENSPLAG00000009820	usb1	82	52.193	ENSCATG00000032174	USB1	98	48.014	Cercocebus_atys
ENSPLAG00000009820	usb1	62	50.867	ENSCLAG00000007363	USB1	87	53.595	Chinchilla_lanigera
ENSPLAG00000009820	usb1	82	52.193	ENSCSAG00000004783	USB1	98	48.551	Chlorocebus_sabaeus
ENSPLAG00000009820	usb1	82	55.263	ENSCPBG00000026943	USB1	98	50.896	Chrysemys_picta_bellii
ENSPLAG00000009820	usb1	81	33.891	ENSCING00000011490	-	95	32.567	Ciona_intestinalis
ENSPLAG00000009820	usb1	80	33.475	ENSCSAVG00000000894	-	91	31.071	Ciona_savignyi
ENSPLAG00000009820	usb1	81	52.423	ENSCANG00000037135	USB1	98	48.727	Colobus_angolensis_palliatus
ENSPLAG00000009820	usb1	99	49.638	ENSCGRG00001011243	USB1	98	49.638	Cricetulus_griseus_chok1gshd
ENSPLAG00000009820	usb1	99	49.638	ENSCGRG00000013252	USB1	98	49.638	Cricetulus_griseus_crigri
ENSPLAG00000009820	usb1	99	67.148	ENSCSEG00000013881	usb1	99	67.148	Cynoglossus_semilaevis
ENSPLAG00000009820	usb1	81	82.819	ENSCVAG00000009252	usb1	97	82.819	Cyprinodon_variegatus
ENSPLAG00000009820	usb1	85	58.403	ENSDARG00000003841	usb1	100	54.804	Danio_rerio
ENSPLAG00000009820	usb1	99	47.101	ENSDORG00000001888	Usb1	98	48.375	Dipodomys_ordii
ENSPLAG00000009820	usb1	76	43.925	FBgn0037713	CG16790	81	43.925	Drosophila_melanogaster
ENSPLAG00000009820	usb1	99	42.238	ENSETEG00000019682	USB1	98	42.238	Echinops_telfairi
ENSPLAG00000009820	usb1	96	41.852	ENSEBUG00000005889	usb1	89	42.023	Eptatretus_burgeri
ENSPLAG00000009820	usb1	99	47.826	ENSEASG00005005484	USB1	98	47.826	Equus_asinus_asinus
ENSPLAG00000009820	usb1	99	47.464	ENSECAG00000019493	USB1	90	47.464	Equus_caballus
ENSPLAG00000009820	usb1	62	47.977	ENSEEUG00000000154	USB1	58	49.673	Erinaceus_europaeus
ENSPLAG00000009820	usb1	91	61.265	ENSELUG00000010974	usb1	100	59.928	Esox_lucius
ENSPLAG00000009820	usb1	84	49.573	ENSFCAG00000002693	USB1	98	46.786	Felis_catus
ENSPLAG00000009820	usb1	81	54.148	ENSFALG00000006876	USB1	98	49.281	Ficedula_albicollis
ENSPLAG00000009820	usb1	99	46.377	ENSFDAG00000010052	USB1	98	46.377	Fukomys_damarensis
ENSPLAG00000009820	usb1	88	82.377	ENSFHEG00000012334	usb1	98	82.377	Fundulus_heteroclitus
ENSPLAG00000009820	usb1	81	70.089	ENSGMOG00000004228	usb1	100	70.089	Gadus_morhua
ENSPLAG00000009820	usb1	90	50.598	ENSGALG00000035604	USB1	98	48.561	Gallus_gallus
ENSPLAG00000009820	usb1	100	94.604	ENSGAFG00000021890	usb1	100	94.604	Gambusia_affinis
ENSPLAG00000009820	usb1	99	69.314	ENSGACG00000003257	usb1	99	69.314	Gasterosteus_aculeatus
ENSPLAG00000009820	usb1	99	52.174	ENSGAGG00000022572	USB1	98	52.174	Gopherus_agassizii
ENSPLAG00000009820	usb1	82	52.193	ENSGGOG00000017147	USB1	98	48.551	Gorilla_gorilla
ENSPLAG00000009820	usb1	91	71.937	ENSHBUG00000009823	usb1	100	70.070	Haplochromis_burtoni
ENSPLAG00000009820	usb1	99	46.739	ENSHGLG00000016078	USB1	96	46.739	Heterocephalus_glaber_female
ENSPLAG00000009820	usb1	99	46.739	ENSHGLG00100005562	USB1	96	46.739	Heterocephalus_glaber_male
ENSPLAG00000009820	usb1	78	72.936	ENSHCOG00000015633	usb1	99	64.727	Hippocampus_comes
ENSPLAG00000009820	usb1	99	54.795	ENSIPUG00000008601	usb1	100	55.363	Ictalurus_punctatus
ENSPLAG00000009820	usb1	99	48.014	ENSSTOG00000007548	USB1	98	49.097	Ictidomys_tridecemlineatus
ENSPLAG00000009820	usb1	99	48.551	ENSJJAG00000021859	Usb1	98	48.551	Jaculus_jaculus
ENSPLAG00000009820	usb1	94	75.862	ENSKMAG00000007200	usb1	99	74.126	Kryptolebias_marmoratus
ENSPLAG00000009820	usb1	89	67.600	ENSLBEG00000008452	usb1	86	65.818	Labrus_bergylta
ENSPLAG00000009820	usb1	93	48.659	ENSLACG00000000105	USB1	98	48.239	Latimeria_chalumnae
ENSPLAG00000009820	usb1	99	48.397	ENSLOCG00000000465	usb1	100	49.831	Lepisosteus_oculatus
ENSPLAG00000009820	usb1	99	40.217	ENSLAFG00000002267	USB1	98	39.373	Loxodonta_africana
ENSPLAG00000009820	usb1	82	52.193	ENSMFAG00000003926	USB1	98	48.014	Macaca_fascicularis
ENSPLAG00000009820	usb1	82	52.193	ENSMMUG00000022669	USB1	98	48.014	Macaca_mulatta
ENSPLAG00000009820	usb1	82	51.754	ENSMNEG00000042487	USB1	98	47.653	Macaca_nemestrina
ENSPLAG00000009820	usb1	82	52.193	ENSMLEG00000028756	USB1	98	48.014	Mandrillus_leucophaeus
ENSPLAG00000009820	usb1	99	74.194	ENSMAMG00000015092	usb1	99	74.194	Mastacembelus_armatus
ENSPLAG00000009820	usb1	91	71.937	ENSMZEG00005010008	usb1	100	70.070	Maylandia_zebra
ENSPLAG00000009820	usb1	99	48.551	ENSMAUG00000007832	Usb1	98	48.551	Mesocricetus_auratus
ENSPLAG00000009820	usb1	82	52.193	ENSMICG00000004900	USB1	98	48.014	Microcebus_murinus
ENSPLAG00000009820	usb1	99	49.640	ENSMOCG00000022647	Usb1	98	49.640	Microtus_ochrogaster
ENSPLAG00000009820	usb1	81	75.000	ENSMMOG00000000490	usb1	99	66.667	Mola_mola
ENSPLAG00000009820	usb1	99	47.687	ENSMODG00000014067	USB1	99	49.822	Monodelphis_domestica
ENSPLAG00000009820	usb1	90	72.691	ENSMALG00000005930	usb1	100	69.258	Monopterus_albus
ENSPLAG00000009820	usb1	99	49.097	MGP_CAROLIEiJ_G0031421	Usb1	99	49.558	Mus_caroli
ENSPLAG00000009820	usb1	99	49.097	ENSMUSG00000031792	Usb1	99	49.558	Mus_musculus
ENSPLAG00000009820	usb1	82	53.509	MGP_PahariEiJ_G0023019	Usb1	100	50.847	Mus_pahari
ENSPLAG00000009820	usb1	99	48.551	MGP_SPRETEiJ_G0032540	Usb1	98	48.561	Mus_spretus
ENSPLAG00000009820	usb1	84	50.000	ENSMPUG00000004684	USB1	94	46.739	Mustela_putorius_furo
ENSPLAG00000009820	usb1	82	52.632	ENSMLUG00000007400	USB1	98	52.632	Myotis_lucifugus
ENSPLAG00000009820	usb1	99	48.070	ENSNGAG00000009703	Usb1	98	50.000	Nannospalax_galili
ENSPLAG00000009820	usb1	91	65.613	ENSNBRG00000008747	usb1	100	73.023	Neolamprologus_brichardi
ENSPLAG00000009820	usb1	75	52.632	ENSNLEG00000003340	USB1	96	48.638	Nomascus_leucogenys
ENSPLAG00000009820	usb1	99	48.375	ENSODEG00000016214	USB1	98	48.375	Octodon_degus
ENSPLAG00000009820	usb1	99	70.922	ENSONIG00000011063	usb1	100	70.922	Oreochromis_niloticus
ENSPLAG00000009820	usb1	81	51.111	ENSOANG00000012118	USB1	94	51.111	Ornithorhynchus_anatinus
ENSPLAG00000009820	usb1	87	75.934	ENSORLG00000012479	usb1	100	71.480	Oryzias_latipes
ENSPLAG00000009820	usb1	87	74.689	ENSORLG00020018671	usb1	100	68.953	Oryzias_latipes_hni
ENSPLAG00000009820	usb1	87	75.934	ENSORLG00015009679	usb1	100	71.119	Oryzias_latipes_hsok
ENSPLAG00000009820	usb1	99	71.014	ENSOMEG00000012930	usb1	100	71.583	Oryzias_melastigma
ENSPLAG00000009820	usb1	85	47.881	ENSOGAG00000003273	USB1	98	45.290	Otolemur_garnettii
ENSPLAG00000009820	usb1	86	50.209	ENSOARG00000001107	USB1	91	50.209	Ovis_aries
ENSPLAG00000009820	usb1	82	51.754	ENSPPAG00000042137	USB1	98	48.188	Pan_paniscus
ENSPLAG00000009820	usb1	84	49.145	ENSPPRG00000024797	USB1	98	46.595	Panthera_pardus
ENSPLAG00000009820	usb1	84	48.718	ENSPTIG00000007506	USB1	98	45.878	Panthera_tigris_altaica
ENSPLAG00000009820	usb1	82	48.684	ENSPTRG00000008172	USB1	100	53.023	Pan_troglodytes
ENSPLAG00000009820	usb1	82	52.193	ENSPANG00000025138	USB1	98	48.014	Papio_anubis
ENSPLAG00000009820	usb1	83	64.655	ENSPKIG00000015109	usb1	99	55.892	Paramormyrops_kingsleyae
ENSPLAG00000009820	usb1	81	45.374	ENSPSIG00000004305	USB1	100	45.374	Pelodiscus_sinensis
ENSPLAG00000009820	usb1	80	66.816	ENSPMGG00000017725	usb1	98	58.909	Periophthalmus_magnuspinnatus
ENSPLAG00000009820	usb1	99	48.188	ENSPEMG00000016183	Usb1	98	48.188	Peromyscus_maniculatus_bairdii
ENSPLAG00000009820	usb1	78	52.968	ENSPMAG00000000462	usb1	92	52.968	Petromyzon_marinus
ENSPLAG00000009820	usb1	100	98.201	ENSPFOG00000011130	usb1	100	98.201	Poecilia_formosa
ENSPLAG00000009820	usb1	100	97.482	ENSPMEG00000006402	usb1	100	97.482	Poecilia_mexicana
ENSPLAG00000009820	usb1	88	96.311	ENSPREG00000001047	usb1	99	96.311	Poecilia_reticulata
ENSPLAG00000009820	usb1	77	48.837	ENSPPYG00000007401	USB1	98	45.627	Pongo_abelii
ENSPLAG00000009820	usb1	82	51.316	ENSPCOG00000022612	USB1	98	47.653	Propithecus_coquereli
ENSPLAG00000009820	usb1	99	46.931	ENSPVAG00000004613	USB1	98	46.931	Pteropus_vampyrus
ENSPLAG00000009820	usb1	99	68.551	ENSPNYG00000022262	usb1	100	69.718	Pundamilia_nyererei
ENSPLAG00000009820	usb1	91	59.608	ENSPNAG00000011736	usb1	100	55.932	Pygocentrus_nattereri
ENSPLAG00000009820	usb1	99	48.561	ENSRNOG00000013216	Usb1	98	48.561	Rattus_norvegicus
ENSPLAG00000009820	usb1	82	49.123	ENSRBIG00000044466	USB1	100	53.023	Rhinopithecus_bieti
ENSPLAG00000009820	usb1	82	52.193	ENSRROG00000029211	USB1	98	48.913	Rhinopithecus_roxellana
ENSPLAG00000009820	usb1	82	52.193	ENSSBOG00000029362	USB1	98	47.292	Saimiri_boliviensis_boliviensis
ENSPLAG00000009820	usb1	78	50.917	ENSSHAG00000006993	USB1	90	51.316	Sarcophilus_harrisii
ENSPLAG00000009820	usb1	82	64.807	ENSSFOG00015023663	usb1	91	57.966	Scleropages_formosus
ENSPLAG00000009820	usb1	99	67.230	ENSSMAG00000015834	usb1	100	67.230	Scophthalmus_maximus
ENSPLAG00000009820	usb1	81	79.111	ENSSDUG00000002949	usb1	100	69.675	Seriola_dumerili
ENSPLAG00000009820	usb1	99	72.598	ENSSLDG00000014174	usb1	100	73.665	Seriola_lalandi_dorsalis
ENSPLAG00000009820	usb1	77	54.884	ENSSPUG00000006741	USB1	100	54.884	Sphenodon_punctatus
ENSPLAG00000009820	usb1	99	72.183	ENSSPAG00000007484	usb1	99	72.183	Stegastes_partitus
ENSPLAG00000009820	usb1	86	50.628	ENSSSCG00000002807	USB1	98	48.736	Sus_scrofa
ENSPLAG00000009820	usb1	76	55.924	ENSTGUG00000004792	USB1	87	54.709	Taeniopygia_guttata
ENSPLAG00000009820	usb1	99	68.116	ENSTRUG00000021069	usb1	99	68.116	Takifugu_rubripes
ENSPLAG00000009820	usb1	99	59.058	ENSTNIG00000000626	usb1	98	58.993	Tetraodon_nigroviridis
ENSPLAG00000009820	usb1	81	38.222	ENSTBEG00000001507	USB1	97	38.222	Tupaia_belangeri
ENSPLAG00000009820	usb1	82	52.193	ENSUAMG00000016823	USB1	98	47.687	Ursus_americanus
ENSPLAG00000009820	usb1	77	52.558	ENSUMAG00000021369	USB1	100	52.558	Ursus_maritimus
ENSPLAG00000009820	usb1	99	46.182	ENSVVUG00000023700	USB1	87	51.101	Vulpes_vulpes
ENSPLAG00000009820	usb1	76	55.399	ENSXETG00000013795	usb1	89	54.709	Xenopus_tropicalis
ENSPLAG00000009820	usb1	94	95.385	ENSXMAG00000024687	usb1	81	95.238	Xiphophorus_maculatus