EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSPLAG00000010372 (Gene tree)
Gene ID: 106947694
Gene Symbol: smndc1
Alias: -
Full Name: survival motor neuron domain containing 1
Gene Type: protein_coding
Species: Poecilia_latipinna
Status: putative
Strand: Minus strand
Length: 4691 bases
Position: chrKQ545567.1:795046-799736
Accession: 106947694
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPLAP00000024297	TUDOR	PF00567.24	0.00013	1	1
ENSPLAP00000024297	SMN	PF06003.12	8.6e-17	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPLAT00000003767	-	1413	XM_015032871	ENSPLAP00000024297	238 (aa)	XP_014888357	UPI00072DC5AB

Gene Model

Click here to download ENSPLAG00000010372's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPLAG00000010372's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPLAG00000010372	smndc1	100	76.050	ENSG00000119953	SMNDC1	100	76.050	Homo_sapiens
ENSPLAG00000010372	smndc1	100	90.756	ENSAPOG00000021772	smndc1	100	90.756	Acanthochromis_polyacanthus
ENSPLAG00000010372	smndc1	100	76.050	ENSAMEG00000005251	SMNDC1	100	76.050	Ailuropoda_melanoleuca
ENSPLAG00000010372	smndc1	100	88.655	ENSACIG00000004819	smndc1	100	88.655	Amphilophus_citrinellus
ENSPLAG00000010372	smndc1	100	90.336	ENSAOCG00000017869	smndc1	100	90.336	Amphiprion_ocellaris
ENSPLAG00000010372	smndc1	100	90.336	ENSAPEG00000007752	smndc1	100	90.336	Amphiprion_percula
ENSPLAG00000010372	smndc1	100	90.756	ENSATEG00000006830	smndc1	100	90.756	Anabas_testudineus
ENSPLAG00000010372	smndc1	83	75.758	ENSAPLG00000004322	SMNDC1	100	75.758	Anas_platyrhynchos
ENSPLAG00000010372	smndc1	100	76.050	ENSACAG00000005983	SMNDC1	100	76.050	Anolis_carolinensis
ENSPLAG00000010372	smndc1	100	76.050	ENSANAG00000032875	SMNDC1	100	76.050	Aotus_nancymaae
ENSPLAG00000010372	smndc1	100	88.655	ENSACLG00000016360	smndc1	100	88.655	Astatotilapia_calliptera
ENSPLAG00000010372	smndc1	100	80.252	ENSAMXG00000020310	smndc1	100	80.252	Astyanax_mexicanus
ENSPLAG00000010372	smndc1	100	76.050	ENSBTAG00000000551	SMNDC1	100	76.050	Bos_taurus
ENSPLAG00000010372	smndc1	100	76.050	ENSCJAG00000018624	SMNDC1	100	76.050	Callithrix_jacchus
ENSPLAG00000010372	smndc1	100	76.050	ENSCAFG00000010720	SMNDC1	100	76.050	Canis_familiaris
ENSPLAG00000010372	smndc1	100	76.050	ENSCAFG00020011913	SMNDC1	100	76.050	Canis_lupus_dingo
ENSPLAG00000010372	smndc1	100	76.050	ENSCHIG00000010604	SMNDC1	100	76.050	Capra_hircus
ENSPLAG00000010372	smndc1	100	76.050	ENSTSYG00000026454	SMNDC1	100	76.050	Carlito_syrichta
ENSPLAG00000010372	smndc1	100	62.500	ENSCAPG00000009132	SMNDC1	100	72.637	Cavia_aperea
ENSPLAG00000010372	smndc1	100	76.050	ENSCPOG00000031666	SMNDC1	100	76.050	Cavia_porcellus
ENSPLAG00000010372	smndc1	100	76.050	ENSCCAG00000021793	SMNDC1	100	76.050	Cebus_capucinus
ENSPLAG00000010372	smndc1	100	75.630	ENSCATG00000035910	SMNDC1	100	75.630	Cercocebus_atys
ENSPLAG00000010372	smndc1	100	76.050	ENSCLAG00000002838	SMNDC1	100	76.050	Chinchilla_lanigera
ENSPLAG00000010372	smndc1	100	76.050	ENSCSAG00000005169	SMNDC1	100	76.050	Chlorocebus_sabaeus
ENSPLAG00000010372	smndc1	81	71.503	ENSCHOG00000002936	SMNDC1	100	71.503	Choloepus_hoffmanni
ENSPLAG00000010372	smndc1	100	76.471	ENSCPBG00000012837	SMNDC1	100	76.471	Chrysemys_picta_bellii
ENSPLAG00000010372	smndc1	100	59.244	ENSCANG00000036994	-	100	59.244	Colobus_angolensis_palliatus
ENSPLAG00000010372	smndc1	100	76.050	ENSCANG00000031720	-	100	76.050	Colobus_angolensis_palliatus
ENSPLAG00000010372	smndc1	100	69.748	ENSCANG00000034620	-	100	69.748	Colobus_angolensis_palliatus
ENSPLAG00000010372	smndc1	100	75.630	ENSCGRG00001012973	Smndc1	100	75.630	Cricetulus_griseus_chok1gshd
ENSPLAG00000010372	smndc1	100	75.630	ENSCGRG00000012396	Smndc1	100	75.630	Cricetulus_griseus_crigri
ENSPLAG00000010372	smndc1	100	85.294	ENSCSEG00000015621	smndc1	100	85.294	Cynoglossus_semilaevis
ENSPLAG00000010372	smndc1	100	92.017	ENSCVAG00000020432	smndc1	100	92.017	Cyprinodon_variegatus
ENSPLAG00000010372	smndc1	100	81.513	ENSDARG00000056235	smndc1	100	81.513	Danio_rerio
ENSPLAG00000010372	smndc1	100	76.050	ENSDNOG00000016387	SMNDC1	83	76.050	Dasypus_novemcinctus
ENSPLAG00000010372	smndc1	100	76.050	ENSDORG00000023715	Smndc1	100	76.050	Dipodomys_ordii
ENSPLAG00000010372	smndc1	95	41.767	FBgn0039977	CG17454	98	42.570	Drosophila_melanogaster
ENSPLAG00000010372	smndc1	100	67.220	ENSEBUG00000010929	smndc1	100	68.880	Eptatretus_burgeri
ENSPLAG00000010372	smndc1	100	76.050	ENSEASG00005014930	SMNDC1	100	76.050	Equus_asinus_asinus
ENSPLAG00000010372	smndc1	100	76.050	ENSECAG00000029973	SMNDC1	100	76.050	Equus_caballus
ENSPLAG00000010372	smndc1	83	55.051	ENSEEUG00000013407	-	100	55.051	Erinaceus_europaeus
ENSPLAG00000010372	smndc1	100	81.513	ENSELUG00000000227	smndc1	100	81.513	Esox_lucius
ENSPLAG00000010372	smndc1	100	76.050	ENSFCAG00000027353	SMNDC1	100	76.050	Felis_catus
ENSPLAG00000010372	smndc1	100	76.891	ENSFALG00000002306	SMNDC1	100	76.891	Ficedula_albicollis
ENSPLAG00000010372	smndc1	100	76.050	ENSFDAG00000006468	SMNDC1	100	76.050	Fukomys_damarensis
ENSPLAG00000010372	smndc1	100	93.277	ENSFHEG00000020150	smndc1	100	93.277	Fundulus_heteroclitus
ENSPLAG00000010372	smndc1	100	82.773	ENSGMOG00000016585	smndc1	100	82.773	Gadus_morhua
ENSPLAG00000010372	smndc1	100	76.891	ENSGALG00000008561	SMNDC1	100	76.891	Gallus_gallus
ENSPLAG00000010372	smndc1	100	96.639	ENSGAFG00000011582	smndc1	100	96.639	Gambusia_affinis
ENSPLAG00000010372	smndc1	100	87.395	ENSGACG00000009468	smndc1	100	87.395	Gasterosteus_aculeatus
ENSPLAG00000010372	smndc1	100	76.471	ENSGAGG00000024547	SMNDC1	100	76.471	Gopherus_agassizii
ENSPLAG00000010372	smndc1	100	76.050	ENSGGOG00000010071	SMNDC1	100	76.050	Gorilla_gorilla
ENSPLAG00000010372	smndc1	100	88.655	ENSHBUG00000017596	smndc1	100	88.655	Haplochromis_burtoni
ENSPLAG00000010372	smndc1	100	76.050	ENSHGLG00000013390	-	100	76.050	Heterocephalus_glaber_female
ENSPLAG00000010372	smndc1	100	54.918	ENSHGLG00000001157	-	100	54.098	Heterocephalus_glaber_female
ENSPLAG00000010372	smndc1	100	61.475	ENSHGLG00100004278	-	100	59.677	Heterocephalus_glaber_male
ENSPLAG00000010372	smndc1	100	76.050	ENSHGLG00100004814	-	100	76.050	Heterocephalus_glaber_male
ENSPLAG00000010372	smndc1	100	84.100	ENSHCOG00000000783	smndc1	100	84.100	Hippocampus_comes
ENSPLAG00000010372	smndc1	100	81.092	ENSIPUG00000004217	smndc1	100	81.092	Ictalurus_punctatus
ENSPLAG00000010372	smndc1	100	76.050	ENSSTOG00000006088	SMNDC1	100	76.050	Ictidomys_tridecemlineatus
ENSPLAG00000010372	smndc1	100	76.050	ENSJJAG00000019974	Smndc1	100	76.050	Jaculus_jaculus
ENSPLAG00000010372	smndc1	100	89.916	ENSKMAG00000020134	smndc1	100	89.916	Kryptolebias_marmoratus
ENSPLAG00000010372	smndc1	100	89.076	ENSLBEG00000004598	smndc1	100	89.076	Labrus_bergylta
ENSPLAG00000010372	smndc1	100	74.790	ENSLACG00000007784	SMNDC1	100	74.790	Latimeria_chalumnae
ENSPLAG00000010372	smndc1	100	82.353	ENSLOCG00000012355	smndc1	100	82.353	Lepisosteus_oculatus
ENSPLAG00000010372	smndc1	100	75.630	ENSLAFG00000014353	SMNDC1	100	75.630	Loxodonta_africana
ENSPLAG00000010372	smndc1	100	63.445	ENSMFAG00000038381	-	100	63.445	Macaca_fascicularis
ENSPLAG00000010372	smndc1	100	76.050	ENSMFAG00000002433	-	100	76.050	Macaca_fascicularis
ENSPLAG00000010372	smndc1	100	63.445	ENSMMUG00000045875	-	100	63.445	Macaca_mulatta
ENSPLAG00000010372	smndc1	100	76.050	ENSMMUG00000007775	SMNDC1	100	76.050	Macaca_mulatta
ENSPLAG00000010372	smndc1	100	76.050	ENSMNEG00000042963	-	100	76.050	Macaca_nemestrina
ENSPLAG00000010372	smndc1	100	66.807	ENSMNEG00000033853	-	100	66.807	Macaca_nemestrina
ENSPLAG00000010372	smndc1	100	71.548	ENSMLEG00000040236	SMNDC1	100	71.130	Mandrillus_leucophaeus
ENSPLAG00000010372	smndc1	89	85.915	ENSMAMG00000018233	smndc1	87	85.915	Mastacembelus_armatus
ENSPLAG00000010372	smndc1	100	88.655	ENSMZEG00005027510	smndc1	100	88.655	Maylandia_zebra
ENSPLAG00000010372	smndc1	99	67.932	ENSMGAG00000010777	SMNDC1	99	67.932	Meleagris_gallopavo
ENSPLAG00000010372	smndc1	100	76.050	ENSMAUG00000012243	-	100	76.050	Mesocricetus_auratus
ENSPLAG00000010372	smndc1	99	62.447	ENSMAUG00000005459	-	93	62.447	Mesocricetus_auratus
ENSPLAG00000010372	smndc1	100	75.630	ENSMICG00000027336	-	100	75.630	Microcebus_murinus
ENSPLAG00000010372	smndc1	100	65.546	ENSMICG00000031640	-	100	65.546	Microcebus_murinus
ENSPLAG00000010372	smndc1	100	75.630	ENSMOCG00000002458	Smndc1	100	75.630	Microtus_ochrogaster
ENSPLAG00000010372	smndc1	100	86.555	ENSMMOG00000008856	smndc1	100	86.555	Mola_mola
ENSPLAG00000010372	smndc1	100	76.050	ENSMODG00000010542	SMNDC1	100	76.050	Monodelphis_domestica
ENSPLAG00000010372	smndc1	100	88.235	ENSMALG00000017598	smndc1	100	88.235	Monopterus_albus
ENSPLAG00000010372	smndc1	100	76.050	MGP_CAROLIEiJ_G0023072	Smndc1	100	76.050	Mus_caroli
ENSPLAG00000010372	smndc1	100	76.050	ENSMUSG00000025024	Smndc1	100	76.050	Mus_musculus
ENSPLAG00000010372	smndc1	100	76.050	MGP_PahariEiJ_G0014560	Smndc1	100	76.050	Mus_pahari
ENSPLAG00000010372	smndc1	100	76.050	MGP_SPRETEiJ_G0023993	Smndc1	100	76.050	Mus_spretus
ENSPLAG00000010372	smndc1	100	76.050	ENSMPUG00000002089	SMNDC1	100	76.050	Mustela_putorius_furo
ENSPLAG00000010372	smndc1	100	76.050	ENSMLUG00000016007	SMNDC1	100	76.050	Myotis_lucifugus
ENSPLAG00000010372	smndc1	100	76.471	ENSNGAG00000006833	Smndc1	100	76.471	Nannospalax_galili
ENSPLAG00000010372	smndc1	100	88.235	ENSNBRG00000017089	smndc1	100	88.235	Neolamprologus_brichardi
ENSPLAG00000010372	smndc1	100	76.050	ENSNLEG00000015471	SMNDC1	100	76.050	Nomascus_leucogenys
ENSPLAG00000010372	smndc1	70	58.683	ENSMEUG00000010120	-	82	58.683	Notamacropus_eugenii
ENSPLAG00000010372	smndc1	100	76.050	ENSOPRG00000015348	SMNDC1	100	76.050	Ochotona_princeps
ENSPLAG00000010372	smndc1	100	54.622	ENSODEG00000007594	-	100	52.521	Octodon_degus
ENSPLAG00000010372	smndc1	100	88.235	ENSONIG00000000434	smndc1	100	88.235	Oreochromis_niloticus
ENSPLAG00000010372	smndc1	100	76.471	ENSOANG00000001598	SMNDC1	100	76.471	Ornithorhynchus_anatinus
ENSPLAG00000010372	smndc1	100	55.882	ENSOCUG00000012274	-	100	58.403	Oryctolagus_cuniculus
ENSPLAG00000010372	smndc1	100	75.630	ENSOCUG00000008145	-	100	75.630	Oryctolagus_cuniculus
ENSPLAG00000010372	smndc1	100	83.613	ENSORLG00000005934	smndc1	95	83.613	Oryzias_latipes
ENSPLAG00000010372	smndc1	100	83.613	ENSORLG00020008796	smndc1	95	83.613	Oryzias_latipes_hni
ENSPLAG00000010372	smndc1	100	83.613	ENSORLG00015013666	smndc1	100	83.613	Oryzias_latipes_hsok
ENSPLAG00000010372	smndc1	100	83.613	ENSOMEG00000007590	smndc1	100	83.613	Oryzias_melastigma
ENSPLAG00000010372	smndc1	100	76.050	ENSOGAG00000000571	SMNDC1	100	76.050	Otolemur_garnettii
ENSPLAG00000010372	smndc1	100	76.050	ENSOARG00000009500	SMNDC1	100	76.050	Ovis_aries
ENSPLAG00000010372	smndc1	100	76.050	ENSPPAG00000027815	SMNDC1	100	76.050	Pan_paniscus
ENSPLAG00000010372	smndc1	100	76.050	ENSPPRG00000013749	SMNDC1	100	76.050	Panthera_pardus
ENSPLAG00000010372	smndc1	100	76.050	ENSPTIG00000011451	SMNDC1	100	76.050	Panthera_tigris_altaica
ENSPLAG00000010372	smndc1	100	76.050	ENSPTRG00000002937	SMNDC1	100	76.050	Pan_troglodytes
ENSPLAG00000010372	smndc1	100	71.849	ENSPANG00000031346	-	100	71.849	Papio_anubis
ENSPLAG00000010372	smndc1	100	76.050	ENSPANG00000020805	-	100	76.050	Papio_anubis
ENSPLAG00000010372	smndc1	100	81.092	ENSPKIG00000017164	smndc1	100	81.092	Paramormyrops_kingsleyae
ENSPLAG00000010372	smndc1	100	76.471	ENSPSIG00000012257	SMNDC1	100	76.471	Pelodiscus_sinensis
ENSPLAG00000010372	smndc1	100	81.513	ENSPMGG00000015651	smndc1	100	81.513	Periophthalmus_magnuspinnatus
ENSPLAG00000010372	smndc1	100	76.050	ENSPEMG00000022058	Smndc1	100	76.050	Peromyscus_maniculatus_bairdii
ENSPLAG00000010372	smndc1	100	65.021	ENSPMAG00000007705	smndc1	100	64.609	Petromyzon_marinus
ENSPLAG00000010372	smndc1	95	56.195	ENSPCIG00000009693	-	98	56.195	Phascolarctos_cinereus
ENSPLAG00000010372	smndc1	100	76.050	ENSPCIG00000018419	SMNDC1	100	76.050	Phascolarctos_cinereus
ENSPLAG00000010372	smndc1	100	98.739	ENSPFOG00000017113	smndc1	100	98.739	Poecilia_formosa
ENSPLAG00000010372	smndc1	100	97.899	ENSPMEG00000012288	smndc1	100	97.899	Poecilia_mexicana
ENSPLAG00000010372	smndc1	100	96.639	ENSPREG00000012279	smndc1	100	96.639	Poecilia_reticulata
ENSPLAG00000010372	smndc1	100	76.050	ENSPPYG00000002643	SMNDC1	100	76.050	Pongo_abelii
ENSPLAG00000010372	smndc1	81	71.503	ENSPCAG00000016183	SMNDC1	100	71.503	Procavia_capensis
ENSPLAG00000010372	smndc1	100	75.630	ENSPCOG00000024343	SMNDC1	100	75.630	Propithecus_coquereli
ENSPLAG00000010372	smndc1	100	60.504	ENSPVAG00000004368	SMNDC1	100	60.504	Pteropus_vampyrus
ENSPLAG00000010372	smndc1	83	86.869	ENSPNYG00000024093	smndc1	86	86.869	Pundamilia_nyererei
ENSPLAG00000010372	smndc1	100	78.571	ENSPNAG00000025285	smndc1	100	78.571	Pygocentrus_nattereri
ENSPLAG00000010372	smndc1	100	76.050	ENSRNOG00000014833	Smndc1	100	76.050	Rattus_norvegicus
ENSPLAG00000010372	smndc1	100	75.630	ENSRBIG00000000224	-	100	75.630	Rhinopithecus_bieti
ENSPLAG00000010372	smndc1	100	62.605	ENSRBIG00000032452	-	100	62.605	Rhinopithecus_bieti
ENSPLAG00000010372	smndc1	100	62.605	ENSRROG00000039125	-	100	62.605	Rhinopithecus_roxellana
ENSPLAG00000010372	smndc1	100	76.050	ENSRROG00000044992	-	100	76.050	Rhinopithecus_roxellana
ENSPLAG00000010372	smndc1	100	76.050	ENSSBOG00000026789	SMNDC1	100	76.050	Saimiri_boliviensis_boliviensis
ENSPLAG00000010372	smndc1	100	76.050	ENSSHAG00000015189	SMNDC1	100	76.050	Sarcophilus_harrisii
ENSPLAG00000010372	smndc1	100	80.252	ENSSFOG00015008311	smndc1	100	80.252	Scleropages_formosus
ENSPLAG00000010372	smndc1	100	89.916	ENSSMAG00000020118	smndc1	100	89.916	Scophthalmus_maximus
ENSPLAG00000010372	smndc1	100	89.496	ENSSDUG00000015330	smndc1	100	89.496	Seriola_dumerili
ENSPLAG00000010372	smndc1	100	89.076	ENSSLDG00000017325	smndc1	100	89.076	Seriola_lalandi_dorsalis
ENSPLAG00000010372	smndc1	100	76.050	ENSSARG00000006063	SMNDC1	100	76.050	Sorex_araneus
ENSPLAG00000010372	smndc1	100	76.471	ENSSPUG00000004574	SMNDC1	100	76.471	Sphenodon_punctatus
ENSPLAG00000010372	smndc1	100	89.076	ENSSPAG00000000338	smndc1	100	89.076	Stegastes_partitus
ENSPLAG00000010372	smndc1	100	76.050	ENSSSCG00000030507	SMNDC1	100	76.050	Sus_scrofa
ENSPLAG00000010372	smndc1	100	76.891	ENSTGUG00000010599	SMNDC1	100	76.891	Taeniopygia_guttata
ENSPLAG00000010372	smndc1	100	83.193	ENSTRUG00000023281	smndc1	100	83.193	Takifugu_rubripes
ENSPLAG00000010372	smndc1	100	84.034	ENSTNIG00000013331	smndc1	100	84.034	Tetraodon_nigroviridis
ENSPLAG00000010372	smndc1	100	76.050	ENSTBEG00000014337	SMNDC1	100	76.050	Tupaia_belangeri
ENSPLAG00000010372	smndc1	100	76.050	ENSUAMG00000008142	SMNDC1	100	76.050	Ursus_americanus
ENSPLAG00000010372	smndc1	100	76.050	ENSUMAG00000023722	SMNDC1	100	76.050	Ursus_maritimus
ENSPLAG00000010372	smndc1	83	75.253	ENSVPAG00000003402	SMNDC1	100	75.253	Vicugna_pacos
ENSPLAG00000010372	smndc1	100	76.050	ENSVVUG00000007820	SMNDC1	100	76.050	Vulpes_vulpes
ENSPLAG00000010372	smndc1	57	65.441	ENSXETG00000015415	SMNDC1	96	65.441	Xenopus_tropicalis
ENSPLAG00000010372	smndc1	100	95.378	ENSXCOG00000009159	smndc1	100	95.378	Xiphophorus_couchianus
ENSPLAG00000010372	smndc1	100	96.218	ENSXMAG00000012755	smndc1	100	96.218	Xiphophorus_maculatus