EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSPLAG00000010554 (Gene tree)
Gene ID: 106949764
Gene Symbol: tomm20a
Alias: -
Full Name: AT-rich interaction domain 4B
Gene Type: protein_coding
Species: Poecilia_latipinna
Status: putative
Strand: Plus strand
Length: 63961 bases
Position: chrKQ545677.1:148245-212205
Accession: 106949764
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPLAP00000024405	Tudor-knot	PF11717.8	2.8e-10	1	1
ENSPLAP00000024400	Tudor-knot	PF11717.8	2.8e-10	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPLAT00000003507	-	7647	XM_015036251	ENSPLAP00000024394	1234 (aa)	XP_014891737	UPI00072E1C39
ENSPLAT00000003494	-	7716	-	ENSPLAP00000024400	1257 (aa)	-	-
ENSPLAT00000003476	-	7830	XM_015036245	ENSPLAP00000024405	1295 (aa)	XP_014891731	UPI00072EC282

Gene Model

Click here to download ENSPLAG00000010554's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPLAG00000010554's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPLAG00000010554	tomm20a	55	41.238	ENSG00000054267	ARID4B	85	75.728	Homo_sapiens
ENSPLAG00000010554	tomm20a	100	85.106	ENSAPOG00000010823	tomm20a	100	84.422	Acanthochromis_polyacanthus
ENSPLAG00000010554	tomm20a	93	91.726	ENSACIG00000006313	tomm20a	100	91.726	Amphilophus_citrinellus
ENSPLAG00000010554	tomm20a	100	85.182	ENSAOCG00000003330	tomm20a	100	84.119	Amphiprion_ocellaris
ENSPLAG00000010554	tomm20a	100	85.106	ENSAPEG00000024018	tomm20a	100	84.043	Amphiprion_percula
ENSPLAG00000010554	tomm20a	100	83.384	ENSATEG00000014930	tomm20a	100	83.460	Anabas_testudineus
ENSPLAG00000010554	tomm20a	100	49.858	ENSAPLG00000004422	ARID4B	99	49.124	Anas_platyrhynchos
ENSPLAG00000010554	tomm20a	54	60.055	ENSACAG00000001289	ARID4B	99	51.286	Anolis_carolinensis
ENSPLAG00000010554	tomm20a	100	50.833	ENSANAG00000038088	ARID4B	99	50.785	Aotus_nancymaae
ENSPLAG00000010554	tomm20a	93	81.235	ENSACLG00000023521	tomm20a	100	80.760	Astatotilapia_calliptera
ENSPLAG00000010554	tomm20a	82	77.724	ENSAMXG00000003657	tomm20a	90	76.755	Astyanax_mexicanus
ENSPLAG00000010554	tomm20a	100	51.383	ENSBTAG00000000222	ARID4B	99	51.824	Bos_taurus
ENSPLAG00000010554	tomm20a	100	50.952	ENSCJAG00000018055	ARID4B	99	51.238	Callithrix_jacchus
ENSPLAG00000010554	tomm20a	56	61.019	ENSCAFG00000011439	ARID4B	99	51.670	Canis_familiaris
ENSPLAG00000010554	tomm20a	99	50.929	ENSCAFG00020027130	ARID4B	99	51.307	Canis_lupus_dingo
ENSPLAG00000010554	tomm20a	100	50.615	ENSCCAG00000021520	ARID4B	99	50.667	Cebus_capucinus
ENSPLAG00000010554	tomm20a	100	50.945	ENSCATG00000042166	ARID4B	99	50.598	Cercocebus_atys
ENSPLAG00000010554	tomm20a	52	95.238	ENSCHOG00000001152	ARID4B	62	95.238	Choloepus_hoffmanni
ENSPLAG00000010554	tomm20a	99	77.915	ENSCSEG00000012928	tomm20a	98	76.715	Cynoglossus_semilaevis
ENSPLAG00000010554	tomm20a	100	87.395	ENSCVAG00000003244	tomm20a	100	87.213	Cyprinodon_variegatus
ENSPLAG00000010554	tomm20a	100	65.930	ENSDARG00000090656	tomm20a	99	65.426	Danio_rerio
ENSPLAG00000010554	tomm20a	89	57.647	ENSETEG00000005596	ARID4B	93	56.941	Echinops_telfairi
ENSPLAG00000010554	tomm20a	56	83.333	ENSEEUG00000005378	ARID4B	76	83.333	Erinaceus_europaeus
ENSPLAG00000010554	tomm20a	64	55.611	ENSELUG00000018441	tomm20a	91	54.042	Esox_lucius
ENSPLAG00000010554	tomm20a	99	50.538	ENSFDAG00000014194	ARID4B	54	60.894	Fukomys_damarensis
ENSPLAG00000010554	tomm20a	100	88.388	ENSFHEG00000003798	tomm20a	100	88.312	Fundulus_heteroclitus
ENSPLAG00000010554	tomm20a	90	73.541	ENSGMOG00000018747	tomm20a	91	74.118	Gadus_morhua
ENSPLAG00000010554	tomm20a	99	76.578	ENSGACG00000004298	tomm20a	100	77.262	Gasterosteus_aculeatus
ENSPLAG00000010554	tomm20a	91	70.755	ENSGAGG00000020544	ARID4B	97	50.455	Gopherus_agassizii
ENSPLAG00000010554	tomm20a	100	81.236	ENSHBUG00000020369	tomm20a	100	81.465	Haplochromis_burtoni
ENSPLAG00000010554	tomm20a	97	82.826	ENSHCOG00000010376	tomm20a	100	83.913	Hippocampus_comes
ENSPLAG00000010554	tomm20a	100	62.622	ENSIPUG00000014234	arid4b	99	61.668	Ictalurus_punctatus
ENSPLAG00000010554	tomm20a	100	51.118	ENSJJAG00000021368	Arid4b	54	60.858	Jaculus_jaculus
ENSPLAG00000010554	tomm20a	90	75.616	ENSKMAG00000010987	tomm20a	98	78.860	Kryptolebias_marmoratus
ENSPLAG00000010554	tomm20a	100	61.655	ENSLOCG00000015899	tomm20a	99	61.243	Lepisosteus_oculatus
ENSPLAG00000010554	tomm20a	99	50.903	ENSLAFG00000014295	ARID4B	99	50.745	Loxodonta_africana
ENSPLAG00000010554	tomm20a	93	81.930	ENSMAMG00000017134	tomm20a	99	81.691	Mastacembelus_armatus
ENSPLAG00000010554	tomm20a	100	81.388	ENSMZEG00005009879	tomm20a	100	81.312	Maylandia_zebra
ENSPLAG00000010554	tomm20a	93	86.184	ENSMMOG00000000561	tomm20a	98	86.463	Mola_mola
ENSPLAG00000010554	tomm20a	100	83.689	ENSMALG00000005205	tomm20a	100	82.622	Monopterus_albus
ENSPLAG00000010554	tomm20a	93	87.736	ENSNBRG00000019684	tomm20a	100	89.623	Neolamprologus_brichardi
ENSPLAG00000010554	tomm20a	100	50.945	ENSNLEG00000002665	ARID4B	99	50.675	Nomascus_leucogenys
ENSPLAG00000010554	tomm20a	100	51.692	ENSODEG00000005373	ARID4B	99	50.950	Octodon_degus
ENSPLAG00000010554	tomm20a	100	78.446	ENSORLG00000012510	tomm20a	100	78.065	Oryzias_latipes
ENSPLAG00000010554	tomm20a	91	85.885	ENSORLG00020013988	tomm20a	100	86.588	Oryzias_latipes_hni
ENSPLAG00000010554	tomm20a	91	86.058	ENSORLG00015022835	tomm20a	100	86.288	Oryzias_latipes_hsok
ENSPLAG00000010554	tomm20a	100	78.839	ENSOMEG00000000521	tomm20a	100	79.068	Oryzias_melastigma
ENSPLAG00000010554	tomm20a	99	52.321	ENSOARG00000003481	ARID4B	97	51.887	Ovis_aries
ENSPLAG00000010554	tomm20a	100	51.422	ENSPPRG00000013739	ARID4B	99	52.213	Panthera_pardus
ENSPLAG00000010554	tomm20a	100	52.071	ENSPTIG00000012520	ARID4B	99	52.660	Panthera_tigris_altaica
ENSPLAG00000010554	tomm20a	56	58.916	ENSPMGG00000001596	tomm20a	89	79.070	Periophthalmus_magnuspinnatus
ENSPLAG00000010554	tomm20a	100	52.065	ENSPCIG00000029756	ARID4B	99	51.779	Phascolarctos_cinereus
ENSPLAG00000010554	tomm20a	100	99.228	ENSPFOG00000019430	tomm20a	100	99.228	Poecilia_formosa
ENSPLAG00000010554	tomm20a	100	96.901	ENSPMEG00000003093	tomm20a	100	96.901	Poecilia_mexicana
ENSPLAG00000010554	tomm20a	100	97.456	ENSPREG00000007996	tomm20a	100	97.456	Poecilia_reticulata
ENSPLAG00000010554	tomm20a	93	54.470	ENSPVAG00000015159	ARID4B	99	50.931	Pteropus_vampyrus
ENSPLAG00000010554	tomm20a	99	76.318	ENSPNYG00000013988	tomm20a	100	76.165	Pundamilia_nyererei
ENSPLAG00000010554	tomm20a	100	67.019	ENSPNAG00000000523	tomm20a	92	65.677	Pygocentrus_nattereri
ENSPLAG00000010554	tomm20a	99	47.269	ENSRBIG00000042029	ARID4B	96	47.812	Rhinopithecus_bieti
ENSPLAG00000010554	tomm20a	100	51.159	ENSRROG00000045203	ARID4B	99	50.629	Rhinopithecus_roxellana
ENSPLAG00000010554	tomm20a	100	50.473	ENSSHAG00000015214	ARID4B	99	51.010	Sarcophilus_harrisii
ENSPLAG00000010554	tomm20a	100	60.720	ENSSFOG00015000132	arid4b	99	60.793	Scleropages_formosus
ENSPLAG00000010554	tomm20a	75	48.617	ENSSFOG00015008923	tomm20a	98	49.078	Scleropages_formosus
ENSPLAG00000010554	tomm20a	100	80.599	ENSSMAG00000010430	tomm20a	100	81.423	Scophthalmus_maximus
ENSPLAG00000010554	tomm20a	100	84.996	ENSSDUG00000003019	tomm20a	100	84.539	Seriola_dumerili
ENSPLAG00000010554	tomm20a	100	84.715	ENSSPAG00000007358	tomm20a	100	83.802	Stegastes_partitus
ENSPLAG00000010554	tomm20a	56	61.295	ENSSSCG00000010156	ARID4B	62	61.699	Sus_scrofa
ENSPLAG00000010554	tomm20a	69	69.684	ENSTRUG00000002893	tomm20a	100	69.466	Takifugu_rubripes
ENSPLAG00000010554	tomm20a	58	70.025	ENSTBEG00000003961	ARID4B	67	69.042	Tupaia_belangeri
ENSPLAG00000010554	tomm20a	100	51.599	ENSTTRG00000002228	ARID4B	99	51.232	Tursiops_truncatus
ENSPLAG00000010554	tomm20a	54	59.014	ENSVVUG00000008154	ARID4B	98	50.263	Vulpes_vulpes
ENSPLAG00000010554	tomm20a	100	96.682	ENSXMAG00000006538	tomm20a	100	96.682	Xiphophorus_maculatus