EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSPLAG00000011125 (Gene tree)
Gene ID: 106935696
Gene Symbol: cirbpa
Alias: -
Full Name: cold inducible RNA binding protein
Gene Type: protein_coding
Species: Poecilia_latipinna
Status: putative
Strand: Minus strand
Length: 3988 bases
Position: chrKQ547313.1:94651-98638
Accession: 106935696
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPLAP00000008545	RRM_1	PF00076.22	8.7e-26	1	1
ENSPLAP00000008552	RRM_1	PF00076.22	8.7e-26	1	1
ENSPLAP00000008548	RRM_1	PF00076.22	8.9e-26	1	1
ENSPLAP00000024710	RRM_1	PF00076.22	8.9e-26	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPLAT00000002699	-	743	XM_015016280	ENSPLAP00000008545	183 (aa)	XP_014871766	UPI0004443897
ENSPLAT00000002692	-	787	-	ENSPLAP00000008552	183 (aa)	-	UPI0005148D78
ENSPLAT00000002702	-	704	XM_015016279	ENSPLAP00000008548	185 (aa)	XP_014871765	-
ENSPLAT00000002707	-	702	XM_015016278	ENSPLAP00000024710	185 (aa)	XP_014871764	-

Gene Model

Click here to download ENSPLAG00000011125's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPLAG00000011125's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSPLAG00000011125	cirbpa	55	49.296	ENSPLAG00000013254	hnrnpa1b	65	47.368
ENSPLAG00000011125	cirbpa	57	34.286	ENSPLAG00000022463	ncbp2	59	37.500

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPLAG00000011125	cirbpa	73	84.962	ENSAPOG00000004458	cirbpa	72	84.328	Acanthochromis_polyacanthus
ENSPLAG00000011125	cirbpa	100	80.000	ENSACIG00000016116	cirbpa	99	79.679	Amphilophus_citrinellus
ENSPLAG00000011125	cirbpa	100	77.174	ENSAOCG00000016212	cirbpa	98	74.737	Amphiprion_ocellaris
ENSPLAG00000011125	cirbpa	100	80.000	ENSAPEG00000011989	cirbpa	100	74.869	Amphiprion_percula
ENSPLAG00000011125	cirbpa	100	85.246	ENSATEG00000014985	cirbpa	99	79.670	Anabas_testudineus
ENSPLAG00000011125	cirbpa	100	84.324	ENSACLG00000002094	-	100	81.081	Astatotilapia_calliptera
ENSPLAG00000011125	cirbpa	100	55.072	ENSAMXG00000015612	cirbpb	84	56.650	Astyanax_mexicanus
ENSPLAG00000011125	cirbpa	100	68.557	ENSCSEG00000014344	cirbpa	99	72.251	Cynoglossus_semilaevis
ENSPLAG00000011125	cirbpa	100	88.108	ENSCVAG00000004853	cirbpa	100	87.978	Cyprinodon_variegatus
ENSPLAG00000011125	cirbpa	100	81.720	ENSFHEG00000002580	cirbpa	100	83.871	Fundulus_heteroclitus
ENSPLAG00000011125	cirbpa	100	58.673	ENSGMOG00000007179	cirbpb	98	50.246	Gadus_morhua
ENSPLAG00000011125	cirbpa	100	96.257	ENSGAFG00000008654	cirbpa	99	90.270	Gambusia_affinis
ENSPLAG00000011125	cirbpa	100	68.063	ENSGACG00000015206	cirbpa	99	71.429	Gasterosteus_aculeatus
ENSPLAG00000011125	cirbpa	100	84.492	ENSHBUG00000022060	cirbpa	100	81.081	Haplochromis_burtoni
ENSPLAG00000011125	cirbpa	100	71.354	ENSKMAG00000005905	cirbpa	100	70.492	Kryptolebias_marmoratus
ENSPLAG00000011125	cirbpa	100	65.104	ENSLBEG00000000292	cirbpa	100	62.842	Labrus_bergylta
ENSPLAG00000011125	cirbpa	100	82.703	ENSMAMG00000010168	cirbpa	99	80.541	Mastacembelus_armatus
ENSPLAG00000011125	cirbpa	100	84.492	ENSMZEG00005025577	-	100	81.081	Maylandia_zebra
ENSPLAG00000011125	cirbpa	100	82.514	ENSMALG00000020092	cirbpa	99	85.165	Monopterus_albus
ENSPLAG00000011125	cirbpa	100	84.492	ENSNBRG00000019658	cirbpa	100	81.081	Neolamprologus_brichardi
ENSPLAG00000011125	cirbpa	100	80.000	ENSONIG00000010169	cirbpa	99	79.144	Oreochromis_niloticus
ENSPLAG00000011125	cirbpa	100	85.405	ENSORLG00000015433	cirbpa	99	81.283	Oryzias_latipes
ENSPLAG00000011125	cirbpa	100	85.405	ENSORLG00020016909	cirbpa	99	81.283	Oryzias_latipes_hni
ENSPLAG00000011125	cirbpa	100	85.405	ENSORLG00015016636	cirbpa	99	81.283	Oryzias_latipes_hsok
ENSPLAG00000011125	cirbpa	100	85.792	ENSOMEG00000021469	cirbpa	72	83.060	Oryzias_melastigma
ENSPLAG00000011125	cirbpa	100	76.064	ENSPMGG00000017342	cirbpa	95	74.074	Periophthalmus_magnuspinnatus
ENSPLAG00000011125	cirbpa	100	100.000	ENSPFOG00000015653	cirbpa	100	100.000	Poecilia_formosa
ENSPLAG00000011125	cirbpa	100	100.000	ENSPMEG00000013878	cirbpa	100	100.000	Poecilia_mexicana
ENSPLAG00000011125	cirbpa	100	98.361	ENSPREG00000018042	cirbpa	97	94.536	Poecilia_reticulata
ENSPLAG00000011125	cirbpa	100	84.492	ENSPNYG00000007198	-	99	81.283	Pundamilia_nyererei
ENSPLAG00000011125	cirbpa	100	56.585	ENSPNAG00000019997	cirbpb	98	60.914	Pygocentrus_nattereri
ENSPLAG00000011125	cirbpa	100	60.638	ENSSFOG00015005346	cirbpb	99	66.842	Scleropages_formosus
ENSPLAG00000011125	cirbpa	100	72.589	ENSSMAG00000002412	cirbpa	100	71.282	Scophthalmus_maximus
ENSPLAG00000011125	cirbpa	100	65.027	ENSSDUG00000016099	cirbpa	99	63.265	Seriola_dumerili
ENSPLAG00000011125	cirbpa	100	70.652	ENSSPAG00000023037	cirbpa	98	67.760	Stegastes_partitus
ENSPLAG00000011125	cirbpa	100	71.892	ENSTRUG00000010187	cirbpa	99	69.730	Takifugu_rubripes
ENSPLAG00000011125	cirbpa	100	76.216	ENSTNIG00000000450	cirbpa	99	76.216	Tetraodon_nigroviridis
ENSPLAG00000011125	cirbpa	100	97.268	ENSXCOG00000008262	cirbpa	98	93.443	Xiphophorus_couchianus
ENSPLAG00000011125	cirbpa	100	97.297	ENSXMAG00000019336	cirbpa	99	93.514	Xiphophorus_maculatus