EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSPLAG00000011540 (Gene tree)
Gene ID: 106938661
Gene Symbol: pspc1
Alias: -
Full Name: paraspeckle component 1-like
Gene Type: protein_coding
Species: Poecilia_latipinna
Status: putative
Strand: Minus strand
Length: 12427 bases
Position: chrLMXD01031217.1:5015-17441
Accession: 106938661
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPLAP00000008881	RRM_1	PF00076.22	5.6e-32	1	2
ENSPLAP00000008881	RRM_1	PF00076.22	5.6e-32	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPLAT00000002139	-	3550	XM_015020788	ENSPLAP00000008881	517 (aa)	XP_014876274	UPI000443F3FA

Gene Model

Click here to download ENSPLAG00000011540's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPLAG00000011540's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSPLAG00000011540	pspc1	62	59.692	ENSPLAG00000004407	-	59	53.982
ENSPLAG00000011540	pspc1	65	66.071	ENSPLAG00000017492	nono	83	59.033

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPLAG00000011540	pspc1	87	68.076	ENSG00000121390	PSPC1	97	69.018	Homo_sapiens
ENSPLAG00000011540	pspc1	100	80.492	ENSAPOG00000015946	pspc1	100	79.545	Acanthochromis_polyacanthus
ENSPLAG00000011540	pspc1	93	65.936	ENSAMEG00000017420	PSPC1	93	66.998	Ailuropoda_melanoleuca
ENSPLAG00000011540	pspc1	100	73.143	ENSACIG00000018695	pspc1	100	72.190	Amphilophus_citrinellus
ENSPLAG00000011540	pspc1	100	80.755	ENSAOCG00000005279	pspc1	100	80.189	Amphiprion_ocellaris
ENSPLAG00000011540	pspc1	100	81.214	ENSAPEG00000015927	pspc1	100	80.645	Amphiprion_percula
ENSPLAG00000011540	pspc1	100	68.242	ENSATEG00000004878	pspc1	100	65.784	Anabas_testudineus
ENSPLAG00000011540	pspc1	69	65.928	ENSAPLG00000003643	SFPQ	77	58.111	Anas_platyrhynchos
ENSPLAG00000011540	pspc1	75	66.912	ENSAPLG00000006246	PSPC1	99	67.726	Anas_platyrhynchos
ENSPLAG00000011540	pspc1	90	65.121	ENSACAG00000002093	PSPC1	92	65.868	Anolis_carolinensis
ENSPLAG00000011540	pspc1	68	58.402	ENSACAG00000013307	-	65	53.811	Anolis_carolinensis
ENSPLAG00000011540	pspc1	87	67.653	ENSANAG00000000059	PSPC1	97	67.008	Aotus_nancymaae
ENSPLAG00000011540	pspc1	100	72.797	ENSACLG00000027220	pspc1	100	71.429	Astatotilapia_calliptera
ENSPLAG00000011540	pspc1	100	64.432	ENSAMXG00000036881	pspc1	100	64.991	Astyanax_mexicanus
ENSPLAG00000011540	pspc1	99	64.045	ENSBTAG00000003934	PSPC1	99	63.315	Bos_taurus
ENSPLAG00000011540	pspc1	87	67.653	ENSCJAG00000004554	PSPC1	95	66.008	Callithrix_jacchus
ENSPLAG00000011540	pspc1	87	68.076	ENSCAFG00020002009	PSPC1	97	69.773	Canis_lupus_dingo
ENSPLAG00000011540	pspc1	99	64.045	ENSCHIG00000016708	PSPC1	99	63.315	Capra_hircus
ENSPLAG00000011540	pspc1	76	61.045	ENSTSYG00000032882	PSPC1	90	60.238	Carlito_syrichta
ENSPLAG00000011540	pspc1	87	67.865	ENSCPOG00000000395	PSPC1	97	69.054	Cavia_porcellus
ENSPLAG00000011540	pspc1	87	67.653	ENSCCAG00000033498	PSPC1	95	66.206	Cebus_capucinus
ENSPLAG00000011540	pspc1	87	67.865	ENSCATG00000036434	PSPC1	96	73.961	Cercocebus_atys
ENSPLAG00000011540	pspc1	77	66.667	ENSCLAG00000005241	PSPC1	92	67.696	Chinchilla_lanigera
ENSPLAG00000011540	pspc1	92	61.943	ENSCHOG00000008913	PSPC1	92	63.692	Choloepus_hoffmanni
ENSPLAG00000011540	pspc1	87	67.234	ENSCPBG00000020859	PSPC1	88	68.153	Chrysemys_picta_bellii
ENSPLAG00000011540	pspc1	59	57.792	ENSCSAVG00000003533	-	53	60.791	Ciona_savignyi
ENSPLAG00000011540	pspc1	80	54.608	ENSCANG00000018948	PSPC1	87	79.401	Colobus_angolensis_palliatus
ENSPLAG00000011540	pspc1	92	66.329	ENSCGRG00001018368	Pspc1	92	67.409	Cricetulus_griseus_chok1gshd
ENSPLAG00000011540	pspc1	92	66.329	ENSCGRG00000011724	Pspc1	92	67.409	Cricetulus_griseus_crigri
ENSPLAG00000011540	pspc1	100	84.160	ENSCVAG00000007679	-	100	83.716	Cyprinodon_variegatus
ENSPLAG00000011540	pspc1	100	60.526	ENSDARG00000006621	pspc1	100	64.706	Danio_rerio
ENSPLAG00000011540	pspc1	87	68.344	ENSDNOG00000011078	PSPC1	95	65.564	Dasypus_novemcinctus
ENSPLAG00000011540	pspc1	96	62.308	ENSDORG00000016050	Pspc1	92	64.600	Dipodomys_ordii
ENSPLAG00000011540	pspc1	53	75.248	ENSETEG00000000502	-	60	75.248	Echinops_telfairi
ENSPLAG00000011540	pspc1	91	55.227	ENSEBUG00000003964	-	72	61.538	Eptatretus_burgeri
ENSPLAG00000011540	pspc1	58	45.511	ENSEBUG00000010133	pspc1	76	48.276	Eptatretus_burgeri
ENSPLAG00000011540	pspc1	99	63.265	ENSEASG00005000119	PSPC1	92	71.809	Equus_asinus_asinus
ENSPLAG00000011540	pspc1	99	63.265	ENSECAG00000017286	PSPC1	92	71.809	Equus_caballus
ENSPLAG00000011540	pspc1	50	68.846	ENSEEUG00000011288	-	56	64.286	Erinaceus_europaeus
ENSPLAG00000011540	pspc1	100	66.300	ENSELUG00000003746	pspc1	100	66.300	Esox_lucius
ENSPLAG00000011540	pspc1	99	62.991	ENSFCAG00000027841	PSPC1	97	70.025	Felis_catus
ENSPLAG00000011540	pspc1	87	67.021	ENSFALG00000008750	PSPC1	92	65.795	Ficedula_albicollis
ENSPLAG00000011540	pspc1	91	66.870	ENSFDAG00000002617	PSPC1	94	67.959	Fukomys_damarensis
ENSPLAG00000011540	pspc1	100	62.167	ENSGMOG00000015074	pspc1	100	62.500	Gadus_morhua
ENSPLAG00000011540	pspc1	87	67.234	ENSGALG00000017142	PSPC1	90	67.149	Gallus_gallus
ENSPLAG00000011540	pspc1	76	95.696	ENSGAFG00000006327	pspc1	81	95.696	Gambusia_affinis
ENSPLAG00000011540	pspc1	100	74.038	ENSGACG00000014901	pspc1	99	77.654	Gasterosteus_aculeatus
ENSPLAG00000011540	pspc1	73	64.304	ENSGAGG00000017325	-	64	57.275	Gopherus_agassizii
ENSPLAG00000011540	pspc1	87	67.234	ENSGAGG00000019164	PSPC1	88	68.153	Gopherus_agassizii
ENSPLAG00000011540	pspc1	87	68.076	ENSGGOG00000003414	PSPC1	97	69.018	Gorilla_gorilla
ENSPLAG00000011540	pspc1	100	81.418	ENSHBUG00000001139	pspc1	100	81.801	Haplochromis_burtoni
ENSPLAG00000011540	pspc1	99	63.519	ENSHGLG00000018811	PSPC1	89	69.002	Heterocephalus_glaber_female
ENSPLAG00000011540	pspc1	59	75.896	ENSHGLG00100007962	PSPC1	93	76.393	Heterocephalus_glaber_male
ENSPLAG00000011540	pspc1	81	75.714	ENSHCOG00000013251	pspc1	99	70.485	Hippocampus_comes
ENSPLAG00000011540	pspc1	100	65.485	ENSIPUG00000013192	pspc1	100	66.045	Ictalurus_punctatus
ENSPLAG00000011540	pspc1	91	65.731	ENSSTOG00000026833	PSPC1	97	69.720	Ictidomys_tridecemlineatus
ENSPLAG00000011540	pspc1	87	67.865	ENSJJAG00000018334	Pspc1	92	66.802	Jaculus_jaculus
ENSPLAG00000011540	pspc1	100	62.308	ENSKMAG00000013525	-	98	75.410	Kryptolebias_marmoratus
ENSPLAG00000011540	pspc1	99	72.913	ENSLBEG00000004474	pspc1	100	72.171	Labrus_bergylta
ENSPLAG00000011540	pspc1	100	60.773	ENSLACG00000010762	PSPC1	100	61.852	Latimeria_chalumnae
ENSPLAG00000011540	pspc1	100	65.121	ENSLOCG00000010832	pspc1	99	65.736	Lepisosteus_oculatus
ENSPLAG00000011540	pspc1	92	66.599	ENSLAFG00000010968	PSPC1	92	67.611	Loxodonta_africana
ENSPLAG00000011540	pspc1	87	67.865	ENSMFAG00000032728	PSPC1	97	74.033	Macaca_fascicularis
ENSPLAG00000011540	pspc1	87	67.865	ENSMMUG00000020262	PSPC1	94	73.961	Macaca_mulatta
ENSPLAG00000011540	pspc1	87	67.865	ENSMNEG00000027401	PSPC1	90	70.000	Macaca_nemestrina
ENSPLAG00000011540	pspc1	75	67.397	ENSMLEG00000039043	PSPC1	99	66.898	Mandrillus_leucophaeus
ENSPLAG00000011540	pspc1	100	76.350	ENSMAMG00000004333	pspc1	100	75.978	Mastacembelus_armatus
ENSPLAG00000011540	pspc1	100	72.797	ENSMZEG00005005726	pspc1	100	71.429	Maylandia_zebra
ENSPLAG00000011540	pspc1	76	66.184	ENSMGAG00000015134	PSPC1	100	66.988	Meleagris_gallopavo
ENSPLAG00000011540	pspc1	88	61.489	ENSMAUG00000021067	Pspc1	99	59.414	Mesocricetus_auratus
ENSPLAG00000011540	pspc1	92	67.742	ENSMICG00000013970	PSPC1	97	68.939	Microcebus_murinus
ENSPLAG00000011540	pspc1	92	65.720	ENSMOCG00000006060	Pspc1	92	66.802	Microtus_ochrogaster
ENSPLAG00000011540	pspc1	82	71.429	ENSMMOG00000004352	pspc1	65	50.882	Mola_mola
ENSPLAG00000011540	pspc1	83	70.588	ENSMODG00000008029	PSPC1	71	68.845	Monodelphis_domestica
ENSPLAG00000011540	pspc1	100	79.884	ENSMALG00000008914	pspc1	100	79.884	Monopterus_albus
ENSPLAG00000011540	pspc1	92	65.923	MGP_CAROLIEiJ_G0019341	Pspc1	90	70.534	Mus_caroli
ENSPLAG00000011540	pspc1	92	65.720	ENSMUSG00000021938	Pspc1	90	70.534	Mus_musculus
ENSPLAG00000011540	pspc1	92	65.996	MGP_PahariEiJ_G0030359	Pspc1	90	70.534	Mus_pahari
ENSPLAG00000011540	pspc1	92	65.720	MGP_SPRETEiJ_G0020232	Pspc1	90	70.534	Mus_spretus
ENSPLAG00000011540	pspc1	87	68.076	ENSMPUG00000013347	PSPC1	99	63.956	Mustela_putorius_furo
ENSPLAG00000011540	pspc1	87	68.987	ENSMLUG00000017663	PSPC1	92	67.197	Myotis_lucifugus
ENSPLAG00000011540	pspc1	92	66.395	ENSNGAG00000011271	Pspc1	92	66.599	Nannospalax_galili
ENSPLAG00000011540	pspc1	76	76.515	ENSNBRG00000014059	pspc1	92	74.000	Neolamprologus_brichardi
ENSPLAG00000011540	pspc1	87	68.076	ENSNLEG00000001294	PSPC1	93	66.799	Nomascus_leucogenys
ENSPLAG00000011540	pspc1	87	61.229	ENSODEG00000019012	-	99	59.335	Octodon_degus
ENSPLAG00000011540	pspc1	87	59.660	ENSODEG00000007817	-	99	54.029	Octodon_degus
ENSPLAG00000011540	pspc1	100	81.071	ENSONIG00000012010	pspc1	99	81.071	Oreochromis_niloticus
ENSPLAG00000011540	pspc1	75	66.910	ENSOANG00000009017	-	100	67.971	Ornithorhynchus_anatinus
ENSPLAG00000011540	pspc1	91	53.049	ENSOANG00000011381	-	84	57.639	Ornithorhynchus_anatinus
ENSPLAG00000011540	pspc1	87	68.153	ENSOCUG00000006153	PSPC1	92	67.000	Oryctolagus_cuniculus
ENSPLAG00000011540	pspc1	100	77.799	ENSORLG00000004232	-	100	77.992	Oryzias_latipes
ENSPLAG00000011540	pspc1	100	78.571	ENSORLG00020000578	PSPC1	100	78.764	Oryzias_latipes_hni
ENSPLAG00000011540	pspc1	100	78.378	ENSORLG00015017480	pspc1	100	78.571	Oryzias_latipes_hsok
ENSPLAG00000011540	pspc1	87	68.288	ENSOGAG00000012643	PSPC1	92	67.683	Otolemur_garnettii
ENSPLAG00000011540	pspc1	86	68.365	ENSOARG00000014163	PSPC1	95	68.870	Ovis_aries
ENSPLAG00000011540	pspc1	87	61.945	ENSPPAG00000009836	PSPC1	92	77.812	Pan_paniscus
ENSPLAG00000011540	pspc1	99	62.991	ENSPPRG00000008833	PSPC1	99	63.956	Panthera_pardus
ENSPLAG00000011540	pspc1	84	62.418	ENSPTIG00000016917	PSPC1	90	63.797	Panthera_tigris_altaica
ENSPLAG00000011540	pspc1	83	69.615	ENSPTRG00000005677	PSPC1	97	69.018	Pan_troglodytes
ENSPLAG00000011540	pspc1	87	67.865	ENSPANG00000001992	PSPC1	96	74.033	Papio_anubis
ENSPLAG00000011540	pspc1	100	63.752	ENSPKIG00000003578	pspc1	100	65.177	Paramormyrops_kingsleyae
ENSPLAG00000011540	pspc1	87	66.596	ENSPSIG00000005168	PSPC1	88	66.879	Pelodiscus_sinensis
ENSPLAG00000011540	pspc1	69	72.423	ENSPMGG00000015135	pspc1	98	72.191	Periophthalmus_magnuspinnatus
ENSPLAG00000011540	pspc1	92	65.517	ENSPEMG00000015214	Pspc1	92	67.004	Peromyscus_maniculatus_bairdii
ENSPLAG00000011540	pspc1	58	43.137	ENSPMAG00000004618	pspc1	91	43.137	Petromyzon_marinus
ENSPLAG00000011540	pspc1	92	66.533	ENSPCIG00000017680	PSPC1	95	66.148	Phascolarctos_cinereus
ENSPLAG00000011540	pspc1	99	100.000	ENSPFOG00000003362	pspc1	100	100.000	Poecilia_formosa
ENSPLAG00000011540	pspc1	100	99.613	ENSPMEG00000008322	pspc1	100	99.613	Poecilia_mexicana
ENSPLAG00000011540	pspc1	62	59.877	ENSPMEG00000001025	-	59	53.437	Poecilia_mexicana
ENSPLAG00000011540	pspc1	100	98.453	ENSPREG00000007786	pspc1	100	98.453	Poecilia_reticulata
ENSPLAG00000011540	pspc1	87	67.653	ENSPPYG00000005186	PSPC1	96	66.596	Pongo_abelii
ENSPLAG00000011540	pspc1	93	63.600	ENSPCOG00000014364	PSPC1	88	67.031	Propithecus_coquereli
ENSPLAG00000011540	pspc1	87	67.941	ENSPVAG00000005036	PSPC1	93	66.004	Pteropus_vampyrus
ENSPLAG00000011540	pspc1	100	73.180	ENSPNYG00000008893	pspc1	100	71.810	Pundamilia_nyererei
ENSPLAG00000011540	pspc1	100	66.105	ENSPNAG00000016511	pspc1	100	67.041	Pygocentrus_nattereri
ENSPLAG00000011540	pspc1	92	65.517	ENSRNOG00000020782	Pspc1	90	70.302	Rattus_norvegicus
ENSPLAG00000011540	pspc1	93	65.347	ENSRBIG00000036057	PSPC1	97	73.684	Rhinopithecus_bieti
ENSPLAG00000011540	pspc1	92	65.600	ENSRROG00000036334	PSPC1	97	69.424	Rhinopithecus_roxellana
ENSPLAG00000011540	pspc1	78	58.275	ENSSBOG00000028172	PSPC1	86	79.401	Saimiri_boliviensis_boliviensis
ENSPLAG00000011540	pspc1	92	61.876	ENSSHAG00000004696	PSPC1	95	61.628	Sarcophilus_harrisii
ENSPLAG00000011540	pspc1	87	68.930	ENSSFOG00015001395	pspc1	99	70.886	Scleropages_formosus
ENSPLAG00000011540	pspc1	100	77.154	ENSSMAG00000001761	pspc1	100	76.404	Scophthalmus_maximus
ENSPLAG00000011540	pspc1	100	76.374	ENSSDUG00000010651	pspc1	100	76.923	Seriola_dumerili
ENSPLAG00000011540	pspc1	100	70.849	ENSSLDG00000004284	pspc1	100	71.319	Seriola_lalandi_dorsalis
ENSPLAG00000011540	pspc1	83	64.365	ENSSARG00000000888	PSPC1	99	59.404	Sorex_araneus
ENSPLAG00000011540	pspc1	90	58.774	ENSSPUG00000008550	PSPC1	99	54.461	Sphenodon_punctatus
ENSPLAG00000011540	pspc1	86	52.550	ENSSPUG00000001136	-	63	50.231	Sphenodon_punctatus
ENSPLAG00000011540	pspc1	100	79.478	ENSSPAG00000001921	pspc1	100	78.545	Stegastes_partitus
ENSPLAG00000011540	pspc1	87	68.076	ENSSSCG00000009569	PSPC1	98	69.720	Sus_scrofa
ENSPLAG00000011540	pspc1	87	67.021	ENSTGUG00000011295	PSPC1	99	67.941	Taeniopygia_guttata
ENSPLAG00000011540	pspc1	100	70.690	ENSTRUG00000011335	pspc1	100	70.115	Takifugu_rubripes
ENSPLAG00000011540	pspc1	100	71.954	ENSTNIG00000010358	pspc1	100	71.954	Tetraodon_nigroviridis
ENSPLAG00000011540	pspc1	87	59.615	ENSTBEG00000002361	PSPC1	97	55.985	Tupaia_belangeri
ENSPLAG00000011540	pspc1	100	62.523	ENSTTRG00000003343	PSPC1	99	63.687	Tursiops_truncatus
ENSPLAG00000011540	pspc1	62	74.528	ENSUAMG00000012309	PSPC1	98	70.056	Ursus_americanus
ENSPLAG00000011540	pspc1	93	65.545	ENSUMAG00000013993	PSPC1	97	73.407	Ursus_maritimus
ENSPLAG00000011540	pspc1	75	67.229	ENSVPAG00000010029	PSPC1	100	68.949	Vicugna_pacos
ENSPLAG00000011540	pspc1	87	68.076	ENSVVUG00000006414	PSPC1	99	69.773	Vulpes_vulpes
ENSPLAG00000011540	pspc1	76	96.203	ENSXCOG00000017438	pspc1	93	96.203	Xiphophorus_couchianus
ENSPLAG00000011540	pspc1	76	96.962	ENSXMAG00000007929	pspc1	93	96.962	Xiphophorus_maculatus