EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSPLAG00000011925 (Gene tree)
Gene ID: 106940956
Gene Symbol: rpusd1
Alias: -
Full Name: RNA pseudouridine synthase domain containing 1
Gene Type: protein_coding
Species: Poecilia_latipinna
Status: putative
Strand: Minus strand
Length: 3453 bases
Position: chrKQ548686.1:37587-41039
Accession: 106940956
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPLAP00000025151	PseudoU_synth_2	PF00849.22	1.7e-23	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPLAT00000001580	-	1612	XM_015023851	ENSPLAP00000025151	303 (aa)	XP_014879337	UPI00072E8EF5

Gene Model

Click here to download ENSPLAG00000011925's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPLAG00000011925's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPLAG00000011925	rpusd1	98	57.377	ENSG00000007376	RPUSD1	99	67.066	Homo_sapiens
ENSPLAG00000011925	rpusd1	100	80.719	ENSAPOG00000022221	rpusd1	99	81.230	Acanthochromis_polyacanthus
ENSPLAG00000011925	rpusd1	98	59.197	ENSAMEG00000007461	RPUSD1	98	59.197	Ailuropoda_melanoleuca
ENSPLAG00000011925	rpusd1	100	78.526	ENSACIG00000015863	rpusd1	100	79.677	Amphilophus_citrinellus
ENSPLAG00000011925	rpusd1	100	82.201	ENSAOCG00000021975	rpusd1	97	82.201	Amphiprion_ocellaris
ENSPLAG00000011925	rpusd1	100	82.524	ENSAPEG00000001316	rpusd1	97	82.524	Amphiprion_percula
ENSPLAG00000011925	rpusd1	100	76.375	ENSATEG00000002984	rpusd1	99	79.612	Anabas_testudineus
ENSPLAG00000011925	rpusd1	77	59.916	ENSAPLG00000012316	RPUSD1	98	59.916	Anas_platyrhynchos
ENSPLAG00000011925	rpusd1	98	64.214	ENSACAG00000008953	RPUSD1	99	64.214	Anolis_carolinensis
ENSPLAG00000011925	rpusd1	98	57.377	ENSANAG00000024709	RPUSD1	98	57.377	Aotus_nancymaae
ENSPLAG00000011925	rpusd1	100	79.100	ENSACLG00000013692	rpusd1	100	79.421	Astatotilapia_calliptera
ENSPLAG00000011925	rpusd1	99	70.000	ENSAMXG00000019802	rpusd1	99	70.000	Astyanax_mexicanus
ENSPLAG00000011925	rpusd1	98	60.133	ENSBTAG00000000179	RPUSD1	98	60.000	Bos_taurus
ENSPLAG00000011925	rpusd1	98	57.705	ENSCJAG00000012253	RPUSD1	98	57.705	Callithrix_jacchus
ENSPLAG00000011925	rpusd1	98	57.525	ENSCAFG00000019614	RPUSD1	98	58.863	Canis_familiaris
ENSPLAG00000011925	rpusd1	98	57.525	ENSCAFG00020008891	RPUSD1	98	58.863	Canis_lupus_dingo
ENSPLAG00000011925	rpusd1	98	60.465	ENSCHIG00000012872	RPUSD1	98	60.328	Capra_hircus
ENSPLAG00000011925	rpusd1	98	56.522	ENSTSYG00000036934	RPUSD1	98	56.522	Carlito_syrichta
ENSPLAG00000011925	rpusd1	98	58.528	ENSCAPG00000014219	RPUSD1	98	58.528	Cavia_aperea
ENSPLAG00000011925	rpusd1	98	58.528	ENSCPOG00000034604	RPUSD1	98	58.528	Cavia_porcellus
ENSPLAG00000011925	rpusd1	98	57.003	ENSCCAG00000034385	RPUSD1	98	57.705	Cebus_capucinus
ENSPLAG00000011925	rpusd1	98	57.843	ENSCATG00000042983	RPUSD1	98	58.170	Cercocebus_atys
ENSPLAG00000011925	rpusd1	98	57.191	ENSCLAG00000013966	RPUSD1	98	57.191	Chinchilla_lanigera
ENSPLAG00000011925	rpusd1	98	57.377	ENSCSAG00000012121	RPUSD1	98	57.705	Chlorocebus_sabaeus
ENSPLAG00000011925	rpusd1	98	63.455	ENSCPBG00000021101	RPUSD1	99	63.455	Chrysemys_picta_bellii
ENSPLAG00000011925	rpusd1	83	64.427	ENSCANG00000028576	RPUSD1	90	64.427	Colobus_angolensis_palliatus
ENSPLAG00000011925	rpusd1	98	58.882	ENSCGRG00001014253	Rpusd1	98	58.882	Cricetulus_griseus_chok1gshd
ENSPLAG00000011925	rpusd1	98	58.882	ENSCGRG00000017995	Rpusd1	98	58.882	Cricetulus_griseus_crigri
ENSPLAG00000011925	rpusd1	99	75.667	ENSCSEG00000018512	rpusd1	99	75.667	Cynoglossus_semilaevis
ENSPLAG00000011925	rpusd1	100	89.803	ENSCVAG00000022746	rpusd1	100	89.803	Cyprinodon_variegatus
ENSPLAG00000011925	rpusd1	98	70.805	ENSDARG00000060192	rpusd1	99	70.805	Danio_rerio
ENSPLAG00000011925	rpusd1	98	55.814	ENSDNOG00000003721	RPUSD1	98	55.814	Dasypus_novemcinctus
ENSPLAG00000011925	rpusd1	98	57.191	ENSDORG00000026656	Rpusd1	98	57.756	Dipodomys_ordii
ENSPLAG00000011925	rpusd1	96	46.906	ENSEBUG00000008767	rpusd1	92	46.906	Eptatretus_burgeri
ENSPLAG00000011925	rpusd1	98	56.634	ENSEASG00005018421	RPUSD1	74	56.958	Equus_asinus_asinus
ENSPLAG00000011925	rpusd1	100	68.471	ENSELUG00000014307	rpusd1	90	69.805	Esox_lucius
ENSPLAG00000011925	rpusd1	98	58.863	ENSFCAG00000010359	RPUSD1	98	58.863	Felis_catus
ENSPLAG00000011925	rpusd1	98	66.107	ENSFALG00000003211	RPUSD1	99	66.107	Ficedula_albicollis
ENSPLAG00000011925	rpusd1	98	57.525	ENSFDAG00000013398	RPUSD1	98	57.525	Fukomys_damarensis
ENSPLAG00000011925	rpusd1	100	86.971	ENSFHEG00000004736	rpusd1	100	89.902	Fundulus_heteroclitus
ENSPLAG00000011925	rpusd1	99	71.336	ENSGMOG00000010756	rpusd1	99	72.638	Gadus_morhua
ENSPLAG00000011925	rpusd1	98	64.356	ENSGALG00000005315	RPUSD1	99	64.356	Gallus_gallus
ENSPLAG00000011925	rpusd1	100	94.737	ENSGAFG00000009886	rpusd1	100	94.737	Gambusia_affinis
ENSPLAG00000011925	rpusd1	100	73.633	ENSGACG00000014276	rpusd1	100	77.994	Gasterosteus_aculeatus
ENSPLAG00000011925	rpusd1	98	63.123	ENSGAGG00000004181	RPUSD1	99	63.123	Gopherus_agassizii
ENSPLAG00000011925	rpusd1	98	58.170	ENSGGOG00000013997	RPUSD1	98	58.170	Gorilla_gorilla
ENSPLAG00000011925	rpusd1	100	79.421	ENSHBUG00000023728	rpusd1	100	79.743	Haplochromis_burtoni
ENSPLAG00000011925	rpusd1	98	57.525	ENSHGLG00000002595	RPUSD1	98	57.525	Heterocephalus_glaber_female
ENSPLAG00000011925	rpusd1	98	57.525	ENSHGLG00100014303	RPUSD1	98	57.525	Heterocephalus_glaber_male
ENSPLAG00000011925	rpusd1	99	73.115	ENSHCOG00000002390	rpusd1	99	73.115	Hippocampus_comes
ENSPLAG00000011925	rpusd1	98	66.779	ENSIPUG00000001570	rpusd1	98	66.779	Ictalurus_punctatus
ENSPLAG00000011925	rpusd1	98	57.525	ENSSTOG00000004276	RPUSD1	98	57.525	Ictidomys_tridecemlineatus
ENSPLAG00000011925	rpusd1	98	58.333	ENSJJAG00000015696	Rpusd1	98	58.416	Jaculus_jaculus
ENSPLAG00000011925	rpusd1	99	85.149	ENSKMAG00000017287	rpusd1	99	85.149	Kryptolebias_marmoratus
ENSPLAG00000011925	rpusd1	100	77.994	ENSLBEG00000013354	RPUSD1	99	77.994	Labrus_bergylta
ENSPLAG00000011925	rpusd1	100	77.994	ENSLBEG00000022502	rpusd1	99	77.994	Labrus_bergylta
ENSPLAG00000011925	rpusd1	98	64.026	ENSLACG00000008869	RPUSD1	99	64.026	Latimeria_chalumnae
ENSPLAG00000011925	rpusd1	71	82.243	ENSLOCG00000005682	rpusd1	99	82.243	Lepisosteus_oculatus
ENSPLAG00000011925	rpusd1	98	57.191	ENSLAFG00000002115	RPUSD1	98	57.191	Loxodonta_africana
ENSPLAG00000011925	rpusd1	98	57.843	ENSMFAG00000003961	RPUSD1	98	58.170	Macaca_fascicularis
ENSPLAG00000011925	rpusd1	98	57.843	ENSMMUG00000000842	RPUSD1	98	58.170	Macaca_mulatta
ENSPLAG00000011925	rpusd1	98	57.843	ENSMNEG00000042712	RPUSD1	98	58.170	Macaca_nemestrina
ENSPLAG00000011925	rpusd1	98	57.843	ENSMLEG00000030591	RPUSD1	98	58.170	Mandrillus_leucophaeus
ENSPLAG00000011925	rpusd1	100	80.000	ENSMAMG00000004735	rpusd1	99	81.935	Mastacembelus_armatus
ENSPLAG00000011925	rpusd1	100	79.100	ENSMZEG00005003214	rpusd1	100	79.421	Maylandia_zebra
ENSPLAG00000011925	rpusd1	96	64.646	ENSMGAG00000005447	RPUSD1	98	64.646	Meleagris_gallopavo
ENSPLAG00000011925	rpusd1	83	56.917	ENSMAUG00000019998	Rpusd1	96	56.917	Mesocricetus_auratus
ENSPLAG00000011925	rpusd1	98	57.667	ENSMICG00000017561	RPUSD1	98	57.667	Microcebus_murinus
ENSPLAG00000011925	rpusd1	98	58.194	ENSMOCG00000014082	Rpusd1	98	59.333	Microtus_ochrogaster
ENSPLAG00000011925	rpusd1	99	74.510	ENSMMOG00000012569	rpusd1	99	75.738	Mola_mola
ENSPLAG00000011925	rpusd1	99	62.706	ENSMODG00000016882	RPUSD1	99	62.706	Monodelphis_domestica
ENSPLAG00000011925	rpusd1	100	79.355	ENSMALG00000017818	rpusd1	99	80.000	Monopterus_albus
ENSPLAG00000011925	rpusd1	98	58.528	MGP_CAROLIEiJ_G0021244	Rpusd1	98	58.746	Mus_caroli
ENSPLAG00000011925	rpusd1	98	58.194	ENSMUSG00000041199	Rpusd1	98	58.746	Mus_musculus
ENSPLAG00000011925	rpusd1	98	57.705	MGP_PahariEiJ_G0023562	Rpusd1	98	58.689	Mus_pahari
ENSPLAG00000011925	rpusd1	98	58.194	MGP_SPRETEiJ_G0022155	Rpusd1	98	58.746	Mus_spretus
ENSPLAG00000011925	rpusd1	96	57.823	ENSMPUG00000015897	RPUSD1	96	57.823	Mustela_putorius_furo
ENSPLAG00000011925	rpusd1	98	58.553	ENSMLUG00000001089	RPUSD1	98	58.553	Myotis_lucifugus
ENSPLAG00000011925	rpusd1	98	57.191	ENSNGAG00000003595	Rpusd1	98	57.190	Nannospalax_galili
ENSPLAG00000011925	rpusd1	100	78.947	ENSNBRG00000006457	rpusd1	100	79.276	Neolamprologus_brichardi
ENSPLAG00000011925	rpusd1	53	49.412	ENSNLEG00000008424	-	97	50.000	Nomascus_leucogenys
ENSPLAG00000011925	rpusd1	98	62.752	ENSMEUG00000016049	RPUSD1	98	62.752	Notamacropus_eugenii
ENSPLAG00000011925	rpusd1	98	51.171	ENSOPRG00000008340	RPUSD1	98	51.171	Ochotona_princeps
ENSPLAG00000011925	rpusd1	98	57.191	ENSODEG00000016945	RPUSD1	98	57.191	Octodon_degus
ENSPLAG00000011925	rpusd1	99	79.221	ENSONIG00000015672	rpusd1	100	79.545	Oreochromis_niloticus
ENSPLAG00000011925	rpusd1	100	76.898	ENSORLG00000013009	rpusd1	99	76.898	Oryzias_latipes
ENSPLAG00000011925	rpusd1	100	76.898	ENSORLG00020010382	rpusd1	99	76.898	Oryzias_latipes_hni
ENSPLAG00000011925	rpusd1	100	76.238	ENSORLG00015021354	rpusd1	99	76.238	Oryzias_latipes_hsok
ENSPLAG00000011925	rpusd1	100	77.888	ENSOMEG00000021426	rpusd1	99	77.888	Oryzias_melastigma
ENSPLAG00000011925	rpusd1	98	57.705	ENSOGAG00000003795	RPUSD1	98	57.705	Otolemur_garnettii
ENSPLAG00000011925	rpusd1	98	60.465	ENSOARG00000014254	RPUSD1	98	60.714	Ovis_aries
ENSPLAG00000011925	rpusd1	98	57.705	ENSPPAG00000034797	RPUSD1	98	57.705	Pan_paniscus
ENSPLAG00000011925	rpusd1	98	59.197	ENSPPRG00000012389	RPUSD1	98	59.197	Panthera_pardus
ENSPLAG00000011925	rpusd1	99	59.136	ENSPTIG00000008545	RPUSD1	77	73.267	Panthera_tigris_altaica
ENSPLAG00000011925	rpusd1	98	57.705	ENSPTRG00000007565	RPUSD1	98	57.705	Pan_troglodytes
ENSPLAG00000011925	rpusd1	98	57.843	ENSPANG00000024401	RPUSD1	98	58.170	Papio_anubis
ENSPLAG00000011925	rpusd1	100	69.408	ENSPKIG00000018890	rpusd1	91	69.408	Paramormyrops_kingsleyae
ENSPLAG00000011925	rpusd1	98	65.449	ENSPSIG00000013945	RPUSD1	99	65.449	Pelodiscus_sinensis
ENSPLAG00000011925	rpusd1	100	75.244	ENSPMGG00000014950	rpusd1	99	75.244	Periophthalmus_magnuspinnatus
ENSPLAG00000011925	rpusd1	98	57.525	ENSPEMG00000000497	Rpusd1	98	57.756	Peromyscus_maniculatus_bairdii
ENSPLAG00000011925	rpusd1	99	53.618	ENSPMAG00000001563	rpusd1	99	54.605	Petromyzon_marinus
ENSPLAG00000011925	rpusd1	98	63.758	ENSPCIG00000021216	-	92	63.758	Phascolarctos_cinereus
ENSPLAG00000011925	rpusd1	100	99.670	ENSPFOG00000007946	rpusd1	100	99.670	Poecilia_formosa
ENSPLAG00000011925	rpusd1	100	99.010	ENSPMEG00000002910	rpusd1	100	99.010	Poecilia_mexicana
ENSPLAG00000011925	rpusd1	100	97.368	ENSPREG00000019851	rpusd1	100	97.368	Poecilia_reticulata
ENSPLAG00000011925	rpusd1	98	44.482	ENSPCAG00000002258	RPUSD1	98	44.482	Procavia_capensis
ENSPLAG00000011925	rpusd1	98	55.410	ENSPCOG00000022582	RPUSD1	98	55.738	Propithecus_coquereli
ENSPLAG00000011925	rpusd1	98	54.426	ENSPVAG00000013104	RPUSD1	98	54.754	Pteropus_vampyrus
ENSPLAG00000011925	rpusd1	100	79.421	ENSPNYG00000024076	rpusd1	100	79.743	Pundamilia_nyererei
ENSPLAG00000011925	rpusd1	99	68.000	ENSPNAG00000013806	rpusd1	99	68.000	Pygocentrus_nattereri
ENSPLAG00000011925	rpusd1	98	58.528	ENSRNOG00000023639	Rpusd1	98	59.406	Rattus_norvegicus
ENSPLAG00000011925	rpusd1	98	58.361	ENSRBIG00000030238	RPUSD1	98	58.361	Rhinopithecus_bieti
ENSPLAG00000011925	rpusd1	98	58.361	ENSRROG00000036663	RPUSD1	98	58.361	Rhinopithecus_roxellana
ENSPLAG00000011925	rpusd1	98	59.197	ENSSBOG00000033063	RPUSD1	98	59.197	Saimiri_boliviensis_boliviensis
ENSPLAG00000011925	rpusd1	98	62.752	ENSSHAG00000013500	RPUSD1	98	62.752	Sarcophilus_harrisii
ENSPLAG00000011925	rpusd1	98	72.483	ENSSFOG00015014394	rpusd1	99	72.483	Scleropages_formosus
ENSPLAG00000011925	rpusd1	100	82.201	ENSSMAG00000008045	rpusd1	93	82.201	Scophthalmus_maximus
ENSPLAG00000011925	rpusd1	100	77.670	ENSSDUG00000001829	rpusd1	97	82.201	Seriola_dumerili
ENSPLAG00000011925	rpusd1	100	77.670	ENSSLDG00000020853	rpusd1	97	82.201	Seriola_lalandi_dorsalis
ENSPLAG00000011925	rpusd1	54	72.892	ENSSARG00000011187	-	99	72.892	Sorex_araneus
ENSPLAG00000011925	rpusd1	62	63.298	ENSSPUG00000005119	-	98	63.298	Sphenodon_punctatus
ENSPLAG00000011925	rpusd1	100	84.466	ENSSPAG00000012708	rpusd1	99	84.466	Stegastes_partitus
ENSPLAG00000011925	rpusd1	98	58.361	ENSSSCG00000008000	RPUSD1	98	65.354	Sus_scrofa
ENSPLAG00000011925	rpusd1	82	71.084	ENSTGUG00000015375	RPUSD1	98	71.084	Taeniopygia_guttata
ENSPLAG00000011925	rpusd1	100	74.757	ENSTRUG00000003041	rpusd1	99	77.023	Takifugu_rubripes
ENSPLAG00000011925	rpusd1	99	72.000	ENSTNIG00000002660	rpusd1	99	72.000	Tetraodon_nigroviridis
ENSPLAG00000011925	rpusd1	98	60.000	ENSTTRG00000010167	RPUSD1	98	60.000	Tursiops_truncatus
ENSPLAG00000011925	rpusd1	98	58.528	ENSUAMG00000012736	RPUSD1	98	58.528	Ursus_americanus
ENSPLAG00000011925	rpusd1	98	58.863	ENSUMAG00000021174	RPUSD1	94	63.320	Ursus_maritimus
ENSPLAG00000011925	rpusd1	98	59.532	ENSVVUG00000012357	RPUSD1	98	59.532	Vulpes_vulpes
ENSPLAG00000011925	rpusd1	98	64.430	ENSXETG00000007184	rpusd1	98	64.430	Xenopus_tropicalis
ENSPLAG00000011925	rpusd1	100	94.408	ENSXCOG00000017930	rpusd1	100	94.408	Xiphophorus_couchianus
ENSPLAG00000011925	rpusd1	100	94.408	ENSXMAG00000024084	rpusd1	100	94.408	Xiphophorus_maculatus