EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSPLAG00000012023 (Gene tree)
Gene ID: 106962487
Gene Symbol: rnpc3
Alias: -
Full Name: RNA binding region (RNP1%2C RRM) containing 3
Gene Type: protein_coding
Species: Poecilia_latipinna
Status: putative
Strand: Minus strand
Length: 15358 bases
Position: chrKQ546733.1:27766-43123
Accession: 106962487
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPLAP00000009294	RRM_1	PF00076.22	8.7e-16	1	2
ENSPLAP00000009294	RRM_1	PF00076.22	8.7e-16	2	2
ENSPLAP00000009298	RRM_1	PF00076.22	1e-15	1	2
ENSPLAP00000009298	RRM_1	PF00076.22	1e-15	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPLAT00000001461	-	1790	-	ENSPLAP00000009294	484 (aa)	-	-
ENSPLAT00000001450	-	1859	XM_015056934	ENSPLAP00000009298	507 (aa)	XP_014912420	UPI00072ED0CC

Gene Model

Click here to download ENSPLAG00000012023's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPLAG00000012023's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPLAG00000012023	rnpc3	97	52.918	ENSG00000185946	RNPC3	96	55.639	Homo_sapiens
ENSPLAG00000012023	rnpc3	99	80.990	ENSAPOG00000017371	rnpc3	99	80.792	Acanthochromis_polyacanthus
ENSPLAG00000012023	rnpc3	97	53.012	ENSAMEG00000001694	RNPC3	95	52.789	Ailuropoda_melanoleuca
ENSPLAG00000012023	rnpc3	99	76.817	ENSACIG00000021043	rnpc3	99	77.014	Amphilophus_citrinellus
ENSPLAG00000012023	rnpc3	99	81.102	ENSAOCG00000014052	rnpc3	98	81.102	Amphiprion_ocellaris
ENSPLAG00000012023	rnpc3	99	80.906	ENSAPEG00000008739	rnpc3	98	80.906	Amphiprion_percula
ENSPLAG00000012023	rnpc3	99	78.016	ENSATEG00000021263	rnpc3	99	77.864	Anabas_testudineus
ENSPLAG00000012023	rnpc3	89	55.702	ENSAPLG00000015605	RNPC3	99	54.825	Anas_platyrhynchos
ENSPLAG00000012023	rnpc3	95	54.601	ENSACAG00000002029	RNPC3	96	52.400	Anolis_carolinensis
ENSPLAG00000012023	rnpc3	97	52.610	ENSANAG00000019950	RNPC3	96	52.390	Aotus_nancymaae
ENSPLAG00000012023	rnpc3	99	79.290	ENSACLG00000014702	rnpc3	99	79.290	Astatotilapia_calliptera
ENSPLAG00000012023	rnpc3	100	63.158	ENSAMXG00000033372	rnpc3	100	63.158	Astyanax_mexicanus
ENSPLAG00000012023	rnpc3	97	53.521	ENSBTAG00000019091	RNPC3	95	53.521	Bos_taurus
ENSPLAG00000012023	rnpc3	97	52.209	ENSCJAG00000035686	RNPC3	95	52.008	Callithrix_jacchus
ENSPLAG00000012023	rnpc3	97	53.119	ENSCAFG00000019972	RNPC3	96	52.894	Canis_familiaris
ENSPLAG00000012023	rnpc3	97	53.119	ENSCAFG00020011300	RNPC3	96	52.894	Canis_lupus_dingo
ENSPLAG00000012023	rnpc3	97	53.678	ENSCHIG00000020361	RNPC3	95	53.414	Capra_hircus
ENSPLAG00000012023	rnpc3	97	52.610	ENSTSYG00000030256	RNPC3	96	52.390	Carlito_syrichta
ENSPLAG00000012023	rnpc3	86	43.665	ENSCAPG00000013600	RNPC3	97	43.807	Cavia_aperea
ENSPLAG00000012023	rnpc3	97	52.008	ENSCPOG00000031638	RNPC3	95	52.008	Cavia_porcellus
ENSPLAG00000012023	rnpc3	97	52.410	ENSCCAG00000024301	RNPC3	96	52.191	Cebus_capucinus
ENSPLAG00000012023	rnpc3	97	40.845	ENSCATG00000035930	-	52	48.163	Cercocebus_atys
ENSPLAG00000012023	rnpc3	97	52.811	ENSCATG00000002086	RNPC3	96	52.590	Cercocebus_atys
ENSPLAG00000012023	rnpc3	97	50.581	ENSCLAG00000005169	RNPC3	96	50.891	Chinchilla_lanigera
ENSPLAG00000012023	rnpc3	97	52.811	ENSCSAG00000001519	RNPC3	96	52.590	Chlorocebus_sabaeus
ENSPLAG00000012023	rnpc3	96	56.175	ENSCPBG00000028311	RNPC3	95	55.976	Chrysemys_picta_bellii
ENSPLAG00000012023	rnpc3	94	36.100	ENSCSAVG00000002800	-	76	54.264	Ciona_savignyi
ENSPLAG00000012023	rnpc3	97	52.410	ENSCANG00000031444	RNPC3	96	52.191	Colobus_angolensis_palliatus
ENSPLAG00000012023	rnpc3	96	53.213	ENSCGRG00001019276	Rnpc3	95	53.213	Cricetulus_griseus_chok1gshd
ENSPLAG00000012023	rnpc3	89	51.087	ENSCGRG00000000053	Rnpc3	99	51.087	Cricetulus_griseus_crigri
ENSPLAG00000012023	rnpc3	99	72.619	ENSCSEG00000013475	rnpc3	99	72.619	Cynoglossus_semilaevis
ENSPLAG00000012023	rnpc3	99	85.855	ENSCVAG00000002645	rnpc3	99	85.855	Cyprinodon_variegatus
ENSPLAG00000012023	rnpc3	99	62.868	ENSDARG00000011247	rnpc3	94	69.714	Danio_rerio
ENSPLAG00000012023	rnpc3	97	52.314	ENSDNOG00000044555	-	95	52.314	Dasypus_novemcinctus
ENSPLAG00000012023	rnpc3	97	52.918	ENSDNOG00000047498	-	95	52.918	Dasypus_novemcinctus
ENSPLAG00000012023	rnpc3	97	52.286	ENSDORG00000027343	Rnpc3	96	52.286	Dipodomys_ordii
ENSPLAG00000012023	rnpc3	54	41.667	FBgn0265184	CG44249	67	41.667	Drosophila_melanogaster
ENSPLAG00000012023	rnpc3	96	50.491	ENSEBUG00000002068	rnpc3	96	50.197	Eptatretus_burgeri
ENSPLAG00000012023	rnpc3	97	53.693	ENSEASG00005015957	RNPC3	95	53.693	Equus_asinus_asinus
ENSPLAG00000012023	rnpc3	97	53.892	ENSECAG00000021148	RNPC3	95	53.892	Equus_caballus
ENSPLAG00000012023	rnpc3	99	67.235	ENSELUG00000002264	rnpc3	99	64.583	Esox_lucius
ENSPLAG00000012023	rnpc3	97	53.200	ENSFCAG00000024312	RNPC3	96	53.200	Felis_catus
ENSPLAG00000012023	rnpc3	89	54.605	ENSFALG00000002580	RNPC3	99	54.245	Ficedula_albicollis
ENSPLAG00000012023	rnpc3	97	53.012	ENSFDAG00000019948	RNPC3	95	53.012	Fukomys_damarensis
ENSPLAG00000012023	rnpc3	99	79.324	ENSFHEG00000020647	rnpc3	99	79.125	Fundulus_heteroclitus
ENSPLAG00000012023	rnpc3	98	68.327	ENSGMOG00000019213	rnpc3	97	67.864	Gadus_morhua
ENSPLAG00000012023	rnpc3	96	56.073	ENSGALG00000005162	RNPC3	88	55.263	Gallus_gallus
ENSPLAG00000012023	rnpc3	100	93.320	ENSGAFG00000017236	rnpc3	100	93.320	Gambusia_affinis
ENSPLAG00000012023	rnpc3	99	77.030	ENSGACG00000002048	rnpc3	99	77.148	Gasterosteus_aculeatus
ENSPLAG00000012023	rnpc3	96	56.574	ENSGAGG00000008438	RNPC3	94	56.539	Gopherus_agassizii
ENSPLAG00000012023	rnpc3	97	47.368	ENSGGOG00000026201	-	95	46.964	Gorilla_gorilla
ENSPLAG00000012023	rnpc3	82	77.083	ENSHBUG00000015966	rnpc3	85	77.089	Haplochromis_burtoni
ENSPLAG00000012023	rnpc3	97	52.610	ENSHGLG00000001708	RNPC3	95	52.610	Heterocephalus_glaber_female
ENSPLAG00000012023	rnpc3	97	52.610	ENSHGLG00100003005	RNPC3	95	52.610	Heterocephalus_glaber_male
ENSPLAG00000012023	rnpc3	99	74.851	ENSHCOG00000017135	rnpc3	99	74.851	Hippocampus_comes
ENSPLAG00000012023	rnpc3	99	61.328	ENSIPUG00000002916	rnpc3	99	62.549	Ictalurus_punctatus
ENSPLAG00000012023	rnpc3	97	51.703	ENSSTOG00000025020	RNPC3	95	51.703	Ictidomys_tridecemlineatus
ENSPLAG00000012023	rnpc3	96	52.314	ENSJJAG00000010203	Rnpc3	96	52.286	Jaculus_jaculus
ENSPLAG00000012023	rnpc3	99	80.716	ENSKMAG00000017358	rnpc3	99	80.318	Kryptolebias_marmoratus
ENSPLAG00000012023	rnpc3	100	78.978	ENSLBEG00000024901	rnpc3	98	78.978	Labrus_bergylta
ENSPLAG00000012023	rnpc3	99	56.809	ENSLACG00000005720	RNPC3	92	54.457	Latimeria_chalumnae
ENSPLAG00000012023	rnpc3	99	61.341	ENSLOCG00000007986	rnpc3	99	58.431	Lepisosteus_oculatus
ENSPLAG00000012023	rnpc3	97	53.320	ENSLAFG00000032342	RNPC3	95	53.320	Loxodonta_africana
ENSPLAG00000012023	rnpc3	97	40.323	ENSMFAG00000002917	-	54	47.368	Macaca_fascicularis
ENSPLAG00000012023	rnpc3	97	52.811	ENSMFAG00000002004	RNPC3	96	52.590	Macaca_fascicularis
ENSPLAG00000012023	rnpc3	82	49.537	ENSMMUG00000002098	-	85	49.537	Macaca_mulatta
ENSPLAG00000012023	rnpc3	97	52.610	ENSMMUG00000018039	RNPC3	96	52.390	Macaca_mulatta
ENSPLAG00000012023	rnpc3	97	49.799	ENSMNEG00000033950	RNPC3	95	49.602	Macaca_nemestrina
ENSPLAG00000012023	rnpc3	97	52.811	ENSMLEG00000033628	RNPC3	96	52.590	Mandrillus_leucophaeus
ENSPLAG00000012023	rnpc3	97	41.700	ENSMLEG00000034644	-	95	40.119	Mandrillus_leucophaeus
ENSPLAG00000012023	rnpc3	100	69.557	ENSMAMG00000007496	rnpc3	100	69.557	Mastacembelus_armatus
ENSPLAG00000012023	rnpc3	99	78.988	ENSMZEG00005020233	rnpc3	99	78.988	Maylandia_zebra
ENSPLAG00000012023	rnpc3	89	54.605	ENSMGAG00000006381	RNPC3	99	54.447	Meleagris_gallopavo
ENSPLAG00000012023	rnpc3	97	53.707	ENSMAUG00000001358	Rnpc3	96	53.479	Mesocricetus_auratus
ENSPLAG00000012023	rnpc3	97	53.012	ENSMICG00000029591	RNPC3	95	53.012	Microcebus_murinus
ENSPLAG00000012023	rnpc3	97	53.200	ENSMOCG00000013423	Rnpc3	96	52.976	Microtus_ochrogaster
ENSPLAG00000012023	rnpc3	99	71.825	ENSMMOG00000005309	rnpc3	99	72.817	Mola_mola
ENSPLAG00000012023	rnpc3	97	53.320	ENSMODG00000002946	RNPC3	95	53.320	Monodelphis_domestica
ENSPLAG00000012023	rnpc3	98	73.413	ENSMALG00000015471	rnpc3	99	73.413	Monopterus_albus
ENSPLAG00000012023	rnpc3	97	54.032	MGP_CAROLIEiJ_G0025555	Rnpc3	96	54.032	Mus_caroli
ENSPLAG00000012023	rnpc3	97	53.614	ENSMUSG00000027981	Rnpc3	99	51.915	Mus_musculus
ENSPLAG00000012023	rnpc3	97	53.386	MGP_PahariEiJ_G0027001	Rnpc3	97	53.386	Mus_pahari
ENSPLAG00000012023	rnpc3	97	50.584	MGP_SPRETEiJ_G0026505	Rnpc3	96	53.614	Mus_spretus
ENSPLAG00000012023	rnpc3	97	53.226	ENSMPUG00000007349	RNPC3	96	53.000	Mustela_putorius_furo
ENSPLAG00000012023	rnpc3	96	54.453	ENSMLUG00000028743	RNPC3	96	54.217	Myotis_lucifugus
ENSPLAG00000012023	rnpc3	97	52.906	ENSNGAG00000010939	Rnpc3	95	52.906	Nannospalax_galili
ENSPLAG00000012023	rnpc3	99	79.684	ENSNBRG00000012196	rnpc3	96	79.684	Neolamprologus_brichardi
ENSPLAG00000012023	rnpc3	97	52.918	ENSNLEG00000012013	RNPC3	96	52.695	Nomascus_leucogenys
ENSPLAG00000012023	rnpc3	97	52.024	ENSODEG00000007612	RNPC3	96	51.807	Octodon_degus
ENSPLAG00000012023	rnpc3	99	80.196	ENSONIG00000004770	rnpc3	100	81.098	Oreochromis_niloticus
ENSPLAG00000012023	rnpc3	91	54.915	ENSOANG00000008220	RNPC3	99	53.419	Ornithorhynchus_anatinus
ENSPLAG00000012023	rnpc3	97	52.906	ENSOCUG00000004016	RNPC3	95	53.000	Oryctolagus_cuniculus
ENSPLAG00000012023	rnpc3	99	77.822	ENSORLG00000005694	rnpc3	99	77.822	Oryzias_latipes
ENSPLAG00000012023	rnpc3	100	78.193	ENSORLG00020005513	rnpc3	100	78.193	Oryzias_latipes_hni
ENSPLAG00000012023	rnpc3	99	78.020	ENSORLG00015002179	rnpc3	99	78.020	Oryzias_latipes_hsok
ENSPLAG00000012023	rnpc3	100	78.978	ENSOMEG00000017737	rnpc3	100	78.978	Oryzias_melastigma
ENSPLAG00000012023	rnpc3	97	53.280	ENSOGAG00000026182	RNPC3	96	53.280	Otolemur_garnettii
ENSPLAG00000012023	rnpc3	97	53.678	ENSOARG00000018719	RNPC3	95	53.414	Ovis_aries
ENSPLAG00000012023	rnpc3	97	47.485	ENSPPAG00000030278	-	97	46.988	Pan_paniscus
ENSPLAG00000012023	rnpc3	97	52.705	ENSPPAG00000037459	RNPC3	96	52.485	Pan_paniscus
ENSPLAG00000012023	rnpc3	97	53.200	ENSPPRG00000020246	RNPC3	96	53.200	Panthera_pardus
ENSPLAG00000012023	rnpc3	97	53.200	ENSPTIG00000009887	RNPC3	97	53.200	Panthera_tigris_altaica
ENSPLAG00000012023	rnpc3	97	52.610	ENSPTRG00000033902	RNPC3	96	52.390	Pan_troglodytes
ENSPLAG00000012023	rnpc3	97	46.761	ENSPTRG00000044227	-	97	46.559	Pan_troglodytes
ENSPLAG00000012023	rnpc3	97	41.865	ENSPANG00000029957	-	51	46.559	Papio_anubis
ENSPLAG00000012023	rnpc3	97	52.918	ENSPANG00000012137	RNPC3	96	52.695	Papio_anubis
ENSPLAG00000012023	rnpc3	99	64.567	ENSPKIG00000008828	rnpc3	98	61.961	Paramormyrops_kingsleyae
ENSPLAG00000012023	rnpc3	65	52.853	ENSPSIG00000007396	RNPC3	99	52.853	Pelodiscus_sinensis
ENSPLAG00000012023	rnpc3	99	64.522	ENSPMGG00000011742	rnpc3	99	64.327	Periophthalmus_magnuspinnatus
ENSPLAG00000012023	rnpc3	92	50.106	ENSPEMG00000020112	Rnpc3	99	51.310	Peromyscus_maniculatus_bairdii
ENSPLAG00000012023	rnpc3	97	53.924	ENSPCIG00000004415	-	95	53.924	Phascolarctos_cinereus
ENSPLAG00000012023	rnpc3	100	98.817	ENSPFOG00000009895	rnpc3	100	98.817	Poecilia_formosa
ENSPLAG00000012023	rnpc3	100	98.619	ENSPMEG00000003663	rnpc3	100	98.619	Poecilia_mexicana
ENSPLAG00000012023	rnpc3	100	97.436	ENSPREG00000010206	rnpc3	100	97.436	Poecilia_reticulata
ENSPLAG00000012023	rnpc3	81	48.921	ENSPPYG00000001102	RNPC3	95	48.694	Pongo_abelii
ENSPLAG00000012023	rnpc3	99	79.093	ENSPNYG00000020603	rnpc3	99	79.093	Pundamilia_nyererei
ENSPLAG00000012023	rnpc3	97	53.427	ENSRNOG00000017310	Rnpc3	95	53.427	Rattus_norvegicus
ENSPLAG00000012023	rnpc3	97	49.098	ENSRBIG00000043897	RNPC3	95	48.907	Rhinopithecus_bieti
ENSPLAG00000012023	rnpc3	97	52.811	ENSRROG00000032334	RNPC3	96	52.590	Rhinopithecus_roxellana
ENSPLAG00000012023	rnpc3	97	52.295	ENSSBOG00000024473	RNPC3	96	52.295	Saimiri_boliviensis_boliviensis
ENSPLAG00000012023	rnpc3	97	53.521	ENSSHAG00000011859	RNPC3	95	53.521	Sarcophilus_harrisii
ENSPLAG00000012023	rnpc3	97	68.273	ENSSFOG00015013055	rnpc3	97	68.000	Scleropages_formosus
ENSPLAG00000012023	rnpc3	99	76.953	ENSSMAG00000020346	rnpc3	99	73.633	Scophthalmus_maximus
ENSPLAG00000012023	rnpc3	99	78.824	ENSSDUG00000006600	rnpc3	99	78.824	Seriola_dumerili
ENSPLAG00000012023	rnpc3	99	78.824	ENSSLDG00000007979	rnpc3	99	78.824	Seriola_lalandi_dorsalis
ENSPLAG00000012023	rnpc3	95	57.230	ENSSPUG00000008539	-	92	56.823	Sphenodon_punctatus
ENSPLAG00000012023	rnpc3	96	52.515	ENSSPUG00000003872	-	92	52.515	Sphenodon_punctatus
ENSPLAG00000012023	rnpc3	99	80.318	ENSSPAG00000005633	rnpc3	99	80.119	Stegastes_partitus
ENSPLAG00000012023	rnpc3	97	51.758	ENSSSCG00000037254	RNPC3	95	51.807	Sus_scrofa
ENSPLAG00000012023	rnpc3	89	55.604	ENSTGUG00000004795	-	99	54.066	Taeniopygia_guttata
ENSPLAG00000012023	rnpc3	99	73.715	ENSTNIG00000018963	rnpc3	99	73.715	Tetraodon_nigroviridis
ENSPLAG00000012023	rnpc3	97	53.012	ENSUMAG00000007775	RNPC3	97	52.883	Ursus_maritimus
ENSPLAG00000012023	rnpc3	97	53.119	ENSVVUG00000000331	RNPC3	96	52.894	Vulpes_vulpes
ENSPLAG00000012023	rnpc3	97	42.717	ENSXETG00000025027	rnpc3	97	42.574	Xenopus_tropicalis
ENSPLAG00000012023	rnpc3	100	90.154	ENSXCOG00000005013	rnpc3	100	91.313	Xiphophorus_couchianus
ENSPLAG00000012023	rnpc3	100	94.892	ENSXMAG00000006495	rnpc3	100	94.892	Xiphophorus_maculatus