EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSPLAG00000012038 (Gene tree)
Gene ID: 106949169
Gene Symbol: -
Alias: -
Full Name: lysine rich coiled-coil 1
Gene Type: protein_coding
Species: Poecilia_latipinna
Status: putative
Strand: Minus strand
Length: 7766 bases
Position: chrKQ545644.1:288896-296661
Accession: 106949169
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPLAP00000025173	zf-met	PF12874.7	1e-19	1	4
ENSPLAP00000025173	zf-met	PF12874.7	1e-19	2	4
ENSPLAP00000025173	zf-met	PF12874.7	1e-19	3	4
ENSPLAP00000025173	zf-met	PF12874.7	1e-19	4	4
ENSPLAP00000025167	zf-met	PF12874.7	9.3e-18	1	3
ENSPLAP00000025167	zf-met	PF12874.7	9.3e-18	2	3
ENSPLAP00000025167	zf-met	PF12874.7	9.3e-18	3	3
ENSPLAP00000025163	zf-met	PF12874.7	4.1e-14	1	3
ENSPLAP00000025163	zf-met	PF12874.7	4.1e-14	2	3
ENSPLAP00000025163	zf-met	PF12874.7	4.1e-14	3	3

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPLAT00000001538	-	1425	-	ENSPLAP00000025167	474 (aa)	-	-
ENSPLAT00000001549	-	1686	-	ENSPLAP00000025163	561 (aa)	-	-
ENSPLAT00000001516	-	2887	XM_015035265	ENSPLAP00000025173	546 (aa)	XP_014890751	-

Gene Model

Click here to download ENSPLAG00000012038's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPLAG00000012038's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPLAG00000012038	-	99	43.701	ENSACIG00000003672	-	100	44.870	Amphilophus_citrinellus
ENSPLAG00000012038	-	62	54.693	ENSAPEG00000002169	-	97	50.398	Amphiprion_percula
ENSPLAG00000012038	-	58	42.945	ENSAMXG00000040757	-	99	34.923	Astyanax_mexicanus
ENSPLAG00000012038	-	99	53.726	ENSFHEG00000022774	-	73	55.459	Fundulus_heteroclitus
ENSPLAG00000012038	-	97	83.799	ENSGAFG00000021491	-	87	80.311	Gambusia_affinis
ENSPLAG00000012038	-	100	46.939	ENSKMAG00000018937	-	94	48.731	Kryptolebias_marmoratus
ENSPLAG00000012038	-	96	32.265	ENSLACG00000004486	-	95	32.200	Latimeria_chalumnae
ENSPLAG00000012038	-	60	58.912	ENSMAMG00000018920	-	100	46.029	Mastacembelus_armatus
ENSPLAG00000012038	-	98	46.123	ENSNBRG00000018883	-	99	46.693	Neolamprologus_brichardi
ENSPLAG00000012038	-	60	49.716	ENSONIG00000020374	-	98	45.032	Oreochromis_niloticus
ENSPLAG00000012038	-	68	53.619	ENSORLG00000026368	-	100	43.025	Oryzias_latipes
ENSPLAG00000012038	-	68	53.619	ENSORLG00020000211	-	100	43.697	Oryzias_latipes_hni
ENSPLAG00000012038	-	68	52.815	ENSORLG00015004724	-	100	44.923	Oryzias_latipes_hsok
ENSPLAG00000012038	-	100	45.234	ENSOMEG00000002792	-	100	46.967	Oryzias_melastigma
ENSPLAG00000012038	-	65	42.679	ENSPKIG00000016531	-	99	36.707	Paramormyrops_kingsleyae
ENSPLAG00000012038	-	100	98.901	ENSPFOG00000010723	-	95	98.901	Poecilia_formosa
ENSPLAG00000012038	-	100	93.380	ENSPMEG00000020927	-	100	93.380	Poecilia_mexicana
ENSPLAG00000012038	-	96	92.641	ENSPREG00000020523	-	100	87.674	Poecilia_reticulata
ENSPLAG00000012038	-	100	44.773	ENSPNYG00000003309	-	99	44.771	Pundamilia_nyererei
ENSPLAG00000012038	-	66	51.491	ENSSLDG00000017802	-	100	45.714	Seriola_lalandi_dorsalis
ENSPLAG00000012038	-	100	86.847	ENSXMAG00000002135	-	100	87.207	Xiphophorus_maculatus