EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSPLAG00000012071 (Gene tree)
Gene ID: 106941750
Gene Symbol: smn1
Alias: -
Full Name: survival motor neuron protein 1-like
Gene Type: protein_coding
Species: Poecilia_latipinna
Status: putative
Strand: Minus strand
Length: 9391 bases
Position: chrKQ545409.1:216859-226249
Accession: 106941750
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPLAP00000025219	SMN	PF06003.12	7.2e-114	1	1
ENSPLAP00000025207	SMN	PF06003.12	1.5e-97	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPLAT00000001426	-	774	-	ENSPLAP00000025207	257 (aa)	-	-
ENSPLAT00000001405	-	1602	XM_015024866	ENSPLAP00000025219	283 (aa)	XP_014880352	UPI00072E9CC3

Gene Model

Click here to download ENSPLAG00000012071's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPLAG00000012071's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPLAG00000012071	smn1	93	57.261	ENSG00000172062	SMN1	90	55.785	Homo_sapiens
ENSPLAG00000012071	smn1	93	57.261	ENSG00000205571	SMN2	83	68.421	Homo_sapiens
ENSPLAG00000012071	smn1	86	30.357	ENSAPOG00000012753	-	64	45.283	Acanthochromis_polyacanthus
ENSPLAG00000012071	smn1	100	82.686	ENSAPOG00000011324	smn1	100	82.686	Acanthochromis_polyacanthus
ENSPLAG00000012071	smn1	94	52.747	ENSAMEG00000003316	-	89	53.846	Ailuropoda_melanoleuca
ENSPLAG00000012071	smn1	93	76.806	ENSACIG00000019772	-	99	76.806	Amphilophus_citrinellus
ENSPLAG00000012071	smn1	65	79.762	ENSACIG00000007598	smn1	93	80.357	Amphilophus_citrinellus
ENSPLAG00000012071	smn1	100	82.686	ENSAOCG00000024444	smn1	100	82.686	Amphiprion_ocellaris
ENSPLAG00000012071	smn1	100	82.686	ENSAPEG00000016504	smn1	100	82.686	Amphiprion_percula
ENSPLAG00000012071	smn1	95	82.963	ENSATEG00000002182	smn1	82	82.963	Anabas_testudineus
ENSPLAG00000012071	smn1	66	44.898	ENSAPLG00000010912	-	96	48.969	Anas_platyrhynchos
ENSPLAG00000012071	smn1	98	51.273	ENSACAG00000010017	-	93	54.789	Anolis_carolinensis
ENSPLAG00000012071	smn1	96	51.568	ENSANAG00000032133	-	95	51.916	Aotus_nancymaae
ENSPLAG00000012071	smn1	99	78.495	ENSACLG00000007308	smn1	94	78.495	Astatotilapia_calliptera
ENSPLAG00000012071	smn1	100	62.324	ENSAMXG00000013884	smn1	100	64.808	Astyanax_mexicanus
ENSPLAG00000012071	smn1	94	52.747	ENSBTAG00000005743	SMN2	93	52.158	Bos_taurus
ENSPLAG00000012071	smn1	93	58.506	ENSCJAG00000016290	-	90	57.025	Callithrix_jacchus
ENSPLAG00000012071	smn1	94	53.846	ENSCAFG00000007812	SMN	93	54.212	Canis_familiaris
ENSPLAG00000012071	smn1	94	53.846	ENSCAFG00020019229	-	86	54.212	Canis_lupus_dingo
ENSPLAG00000012071	smn1	94	52.574	ENSCHIG00000015559	-	91	52.727	Capra_hircus
ENSPLAG00000012071	smn1	93	57.676	ENSTSYG00000012058	-	92	57.438	Carlito_syrichta
ENSPLAG00000012071	smn1	73	46.377	ENSCAPG00000011021	-	88	44.724	Cavia_aperea
ENSPLAG00000012071	smn1	94	51.254	ENSCPOG00000012328	-	93	51.971	Cavia_porcellus
ENSPLAG00000012071	smn1	94	51.825	ENSCPOG00000036973	-	92	52.190	Cavia_porcellus
ENSPLAG00000012071	smn1	93	58.091	ENSCCAG00000018127	-	90	56.612	Cebus_capucinus
ENSPLAG00000012071	smn1	93	57.261	ENSCATG00000037002	-	90	55.785	Cercocebus_atys
ENSPLAG00000012071	smn1	94	53.937	ENSCLAG00000000284	-	91	54.656	Chinchilla_lanigera
ENSPLAG00000012071	smn1	94	53.309	ENSCSAG00000015688	-	91	53.309	Chlorocebus_sabaeus
ENSPLAG00000012071	smn1	71	80.000	ENSCHOG00000007346	-	100	48.235	Choloepus_hoffmanni
ENSPLAG00000012071	smn1	96	51.042	ENSCPBG00000010968	-	96	54.000	Chrysemys_picta_bellii
ENSPLAG00000012071	smn1	93	57.676	ENSCANG00000038242	-	90	57.438	Colobus_angolensis_palliatus
ENSPLAG00000012071	smn1	94	52.675	ENSCANG00000033324	-	90	52.066	Colobus_angolensis_palliatus
ENSPLAG00000012071	smn1	94	42.164	ENSCGRG00001016998	-	91	40.364	Cricetulus_griseus_chok1gshd
ENSPLAG00000012071	smn1	94	54.074	ENSCGRG00001017959	-	93	54.212	Cricetulus_griseus_chok1gshd
ENSPLAG00000012071	smn1	94	54.074	ENSCGRG00000007698	Smn1	93	54.212	Cricetulus_griseus_crigri
ENSPLAG00000012071	smn1	97	64.912	ENSCSEG00000015227	smn1	99	65.263	Cynoglossus_semilaevis
ENSPLAG00000012071	smn1	100	90.493	ENSCVAG00000007498	smn1	100	90.493	Cyprinodon_variegatus
ENSPLAG00000012071	smn1	100	62.333	ENSDARG00000018494	smn1	100	63.918	Danio_rerio
ENSPLAG00000012071	smn1	82	42.857	ENSDNOG00000045949	-	76	48.333	Dasypus_novemcinctus
ENSPLAG00000012071	smn1	82	46.639	ENSDNOG00000007283	-	97	47.521	Dasypus_novemcinctus
ENSPLAG00000012071	smn1	93	44.318	ENSDORG00000007082	Smn1	90	45.283	Dipodomys_ordii
ENSPLAG00000012071	smn1	73	46.875	ENSETEG00000001406	-	86	48.045	Echinops_telfairi
ENSPLAG00000012071	smn1	96	39.161	ENSEBUG00000011902	smn1	96	41.197	Eptatretus_burgeri
ENSPLAG00000012071	smn1	89	46.484	ENSEASG00005018000	-	89	48.249	Equus_asinus_asinus
ENSPLAG00000012071	smn1	94	51.661	ENSECAG00000015215	-	93	53.114	Equus_caballus
ENSPLAG00000012071	smn1	88	50.951	ENSEEUG00000015777	-	100	49.421	Erinaceus_europaeus
ENSPLAG00000012071	smn1	97	68.364	ENSELUG00000018067	smn1	100	67.845	Esox_lucius
ENSPLAG00000012071	smn1	93	56.432	ENSFCAG00000028292	SMN	92	56.198	Felis_catus
ENSPLAG00000012071	smn1	95	56.159	ENSFALG00000012320	-	95	52.107	Ficedula_albicollis
ENSPLAG00000012071	smn1	94	47.518	ENSFDAG00000017683	-	92	51.590	Fukomys_damarensis
ENSPLAG00000012071	smn1	97	89.130	ENSFHEG00000018508	smn1	100	89.130	Fundulus_heteroclitus
ENSPLAG00000012071	smn1	100	65.724	ENSGMOG00000017279	smn1	98	63.958	Gadus_morhua
ENSPLAG00000012071	smn1	94	51.880	ENSGALG00000002430	SMN	95	56.202	Gallus_gallus
ENSPLAG00000012071	smn1	100	98.587	ENSGAFG00000009501	smn1	100	98.587	Gambusia_affinis
ENSPLAG00000012071	smn1	100	80.565	ENSGACG00000010584	smn1	97	78.799	Gasterosteus_aculeatus
ENSPLAG00000012071	smn1	97	35.714	ENSGAGG00000013639	-	95	39.896	Gopherus_agassizii
ENSPLAG00000012071	smn1	95	55.133	ENSGAGG00000011374	-	95	56.835	Gopherus_agassizii
ENSPLAG00000012071	smn1	77	50.754	ENSGGOG00000026704	-	74	60.759	Gorilla_gorilla
ENSPLAG00000012071	smn1	90	57.511	ENSGGOG00000003872	-	93	56.223	Gorilla_gorilla
ENSPLAG00000012071	smn1	100	80.919	ENSHBUG00000013987	smn1	100	80.919	Haplochromis_burtoni
ENSPLAG00000012071	smn1	94	47.464	ENSHGLG00000001905	-	94	51.103	Heterocephalus_glaber_female
ENSPLAG00000012071	smn1	94	50.362	ENSHGLG00000001018	-	92	50.741	Heterocephalus_glaber_female
ENSPLAG00000012071	smn1	94	50.362	ENSHGLG00100011252	-	92	50.741	Heterocephalus_glaber_male
ENSPLAG00000012071	smn1	92	47.407	ENSHGLG00100018676	-	96	51.128	Heterocephalus_glaber_male
ENSPLAG00000012071	smn1	94	68.345	ENSHCOG00000017136	smn1	89	72.830	Hippocampus_comes
ENSPLAG00000012071	smn1	100	65.625	ENSIPUG00000012580	smn1	86	66.308	Ictalurus_punctatus
ENSPLAG00000012071	smn1	91	51.538	ENSSTOG00000012288	-	93	52.453	Ictidomys_tridecemlineatus
ENSPLAG00000012071	smn1	56	51.049	ENSJJAG00000014853	-	91	47.059	Jaculus_jaculus
ENSPLAG00000012071	smn1	100	80.420	ENSKMAG00000007239	smn1	100	80.420	Kryptolebias_marmoratus
ENSPLAG00000012071	smn1	100	82.394	ENSLBEG00000022550	smn1	100	82.394	Labrus_bergylta
ENSPLAG00000012071	smn1	97	36.271	ENSLACG00000009808	-	95	36.054	Latimeria_chalumnae
ENSPLAG00000012071	smn1	98	31.293	ENSLOCG00000000801	-	94	31.250	Lepisosteus_oculatus
ENSPLAG00000012071	smn1	100	56.204	ENSLOCG00000011339	smn1	100	58.935	Lepisosteus_oculatus
ENSPLAG00000012071	smn1	94	51.087	ENSLAFG00000003425	-	99	46.000	Loxodonta_africana
ENSPLAG00000012071	smn1	94	50.368	ENSMFAG00000008812	-	91	50.362	Macaca_fascicularis
ENSPLAG00000012071	smn1	93	58.091	ENSMFAG00000031523	SMN1	90	57.851	Macaca_fascicularis
ENSPLAG00000012071	smn1	94	49.632	ENSMMUG00000030594	-	91	49.638	Macaca_mulatta
ENSPLAG00000012071	smn1	93	58.091	ENSMMUG00000020214	SMN1	90	57.851	Macaca_mulatta
ENSPLAG00000012071	smn1	76	40.991	ENSMNEG00000036423	-	81	40.930	Macaca_nemestrina
ENSPLAG00000012071	smn1	93	58.091	ENSMNEG00000035094	-	90	57.851	Macaca_nemestrina
ENSPLAG00000012071	smn1	93	58.091	ENSMLEG00000041902	-	91	57.851	Mandrillus_leucophaeus
ENSPLAG00000012071	smn1	100	80.634	ENSMAMG00000011034	smn1	100	80.634	Mastacembelus_armatus
ENSPLAG00000012071	smn1	100	81.272	ENSMZEG00005013634	smn1	100	81.272	Maylandia_zebra
ENSPLAG00000012071	smn1	69	50.000	ENSMGAG00000008889	-	94	49.215	Meleagris_gallopavo
ENSPLAG00000012071	smn1	94	51.311	ENSMAUG00000010262	Smn1	93	53.091	Mesocricetus_auratus
ENSPLAG00000012071	smn1	83	46.250	ENSMICG00000034708	-	71	61.250	Microcebus_murinus
ENSPLAG00000012071	smn1	94	54.244	ENSMOCG00000017833	Smn1	92	54.044	Microtus_ochrogaster
ENSPLAG00000012071	smn1	96	71.103	ENSMMOG00000005504	smn1	97	74.330	Mola_mola
ENSPLAG00000012071	smn1	94	53.047	ENSMODG00000001436	-	95	54.225	Monodelphis_domestica
ENSPLAG00000012071	smn1	100	82.042	ENSMALG00000008025	smn1	100	82.042	Monopterus_albus
ENSPLAG00000012071	smn1	94	54.444	MGP_CAROLIEiJ_G0018836	Smn1	93	53.846	Mus_caroli
ENSPLAG00000012071	smn1	94	54.074	ENSMUSG00000021645	Smn1	93	53.704	Mus_musculus
ENSPLAG00000012071	smn1	94	54.815	MGP_PahariEiJ_G0015911	Smn1	93	54.815	Mus_pahari
ENSPLAG00000012071	smn1	94	53.704	MGP_SPRETEiJ_G0019718	Smn1	93	53.333	Mus_spretus
ENSPLAG00000012071	smn1	92	53.759	ENSMPUG00000014470	-	93	52.727	Mustela_putorius_furo
ENSPLAG00000012071	smn1	94	52.536	ENSMLUG00000010603	-	89	53.069	Myotis_lucifugus
ENSPLAG00000012071	smn1	94	51.282	ENSNGAG00000019833	Smn1	93	51.418	Nannospalax_galili
ENSPLAG00000012071	smn1	100	82.686	ENSNBRG00000023000	smn1	100	82.686	Neolamprologus_brichardi
ENSPLAG00000012071	smn1	94	57.438	ENSNLEG00000004454	-	90	56.198	Nomascus_leucogenys
ENSPLAG00000012071	smn1	80	47.619	ENSMEUG00000011393	-	100	46.753	Notamacropus_eugenii
ENSPLAG00000012071	smn1	88	52.362	ENSOPRG00000002015	-	100	53.053	Ochotona_princeps
ENSPLAG00000012071	smn1	91	52.652	ENSODEG00000015976	-	91	51.923	Octodon_degus
ENSPLAG00000012071	smn1	100	82.332	ENSONIG00000011799	smn1	100	82.332	Oreochromis_niloticus
ENSPLAG00000012071	smn1	95	47.872	ENSOANG00000001626	-	95	53.818	Ornithorhynchus_anatinus
ENSPLAG00000012071	smn1	94	52.536	ENSOCUG00000026649	-	92	51.971	Oryctolagus_cuniculus
ENSPLAG00000012071	smn1	94	52.399	ENSOCUG00000017097	-	92	52.555	Oryctolagus_cuniculus
ENSPLAG00000012071	smn1	94	43.841	ENSOCUG00000025183	-	92	42.553	Oryctolagus_cuniculus
ENSPLAG00000012071	smn1	100	80.919	ENSORLG00000010552	smn1	100	80.919	Oryzias_latipes
ENSPLAG00000012071	smn1	100	81.467	ENSORLG00020007936	smn1	100	81.467	Oryzias_latipes_hni
ENSPLAG00000012071	smn1	100	80.919	ENSORLG00015022425	smn1	100	80.919	Oryzias_latipes_hsok
ENSPLAG00000012071	smn1	100	81.272	ENSOMEG00000007824	smn1	100	81.272	Oryzias_melastigma
ENSPLAG00000012071	smn1	91	48.134	ENSOGAG00000031414	-	92	46.886	Otolemur_garnettii
ENSPLAG00000012071	smn1	94	51.103	ENSOARG00000005425	-	97	51.087	Ovis_aries
ENSPLAG00000012071	smn1	93	56.017	ENSPPAG00000036640	-	92	53.232	Pan_paniscus
ENSPLAG00000012071	smn1	93	56.846	ENSPPRG00000005575	-	92	56.612	Panthera_pardus
ENSPLAG00000012071	smn1	93	56.846	ENSPTIG00000007745	-	92	56.612	Panthera_tigris_altaica
ENSPLAG00000012071	smn1	93	57.261	ENSPTRG00000016955	-	90	55.785	Pan_troglodytes
ENSPLAG00000012071	smn1	94	51.103	ENSPANG00000000253	-	91	51.012	Papio_anubis
ENSPLAG00000012071	smn1	94	57.851	ENSPANG00000013601	-	90	57.851	Papio_anubis
ENSPLAG00000012071	smn1	100	61.303	ENSPKIG00000011096	smn1	100	60.920	Paramormyrops_kingsleyae
ENSPLAG00000012071	smn1	92	52.381	ENSPSIG00000014787	-	83	53.906	Pelodiscus_sinensis
ENSPLAG00000012071	smn1	100	67.616	ENSPMGG00000012285	smn1	100	67.857	Periophthalmus_magnuspinnatus
ENSPLAG00000012071	smn1	92	42.007	ENSPMAG00000005004	smn1	89	41.199	Petromyzon_marinus
ENSPLAG00000012071	smn1	97	51.379	ENSPCIG00000025764	-	97	53.873	Phascolarctos_cinereus
ENSPLAG00000012071	smn1	100	99.647	ENSPFOG00000007786	smn1	100	99.647	Poecilia_formosa
ENSPLAG00000012071	smn1	100	99.647	ENSPMEG00000017085	smn1	100	99.647	Poecilia_mexicana
ENSPLAG00000012071	smn1	100	98.940	ENSPREG00000005824	smn1	100	98.940	Poecilia_reticulata
ENSPLAG00000012071	smn1	88	40.562	ENSPPYG00000019189	-	99	42.920	Pongo_abelii
ENSPLAG00000012071	smn1	92	50.379	ENSPPYG00000015533	-	95	51.515	Pongo_abelii
ENSPLAG00000012071	smn1	91	51.119	ENSPCAG00000004187	-	97	50.741	Procavia_capensis
ENSPLAG00000012071	smn1	70	51.934	ENSPCOG00000022307	-	65	59.028	Propithecus_coquereli
ENSPLAG00000012071	smn1	94	54.244	ENSPVAG00000005977	-	92	54.212	Pteropus_vampyrus
ENSPLAG00000012071	smn1	100	82.686	ENSPNYG00000014148	smn1	100	82.686	Pundamilia_nyererei
ENSPLAG00000012071	smn1	100	64.583	ENSPNAG00000014007	smn1	87	66.319	Pygocentrus_nattereri
ENSPLAG00000012071	smn1	95	53.114	ENSRNOG00000018067	Smn1	93	53.455	Rattus_norvegicus
ENSPLAG00000012071	smn1	93	57.676	ENSRBIG00000037052	-	90	57.438	Rhinopithecus_bieti
ENSPLAG00000012071	smn1	91	51.220	ENSRBIG00000036775	-	88	51.440	Rhinopithecus_bieti
ENSPLAG00000012071	smn1	94	50.598	ENSRROG00000031088	-	91	50.000	Rhinopithecus_roxellana
ENSPLAG00000012071	smn1	93	57.676	ENSRROG00000039399	-	90	57.438	Rhinopithecus_roxellana
ENSPLAG00000012071	smn1	56	58.000	ENSSBOG00000020112	-	87	47.200	Saimiri_boliviensis_boliviensis
ENSPLAG00000012071	smn1	93	58.921	ENSSBOG00000011665	-	90	57.438	Saimiri_boliviensis_boliviensis
ENSPLAG00000012071	smn1	96	51.903	ENSSHAG00000001499	-	98	53.114	Sarcophilus_harrisii
ENSPLAG00000012071	smn1	100	61.832	ENSSFOG00015015507	smn1	100	62.548	Scleropages_formosus
ENSPLAG00000012071	smn1	100	78.799	ENSSMAG00000007922	smn1	100	78.799	Scophthalmus_maximus
ENSPLAG00000012071	smn1	100	85.915	ENSSDUG00000018533	smn1	100	85.915	Seriola_dumerili
ENSPLAG00000012071	smn1	100	86.268	ENSSLDG00000021135	smn1	100	86.268	Seriola_lalandi_dorsalis
ENSPLAG00000012071	smn1	96	55.439	ENSSPUG00000000373	-	99	54.513	Sphenodon_punctatus
ENSPLAG00000012071	smn1	100	81.979	ENSSPAG00000004345	smn1	100	81.979	Stegastes_partitus
ENSPLAG00000012071	smn1	75	62.500	ENSSSCG00000029127	-	91	45.679	Sus_scrofa
ENSPLAG00000012071	smn1	94	53.875	ENSSSCG00000016970	-	92	53.214	Sus_scrofa
ENSPLAG00000012071	smn1	91	52.364	ENSTGUG00000001548	-	95	49.270	Taeniopygia_guttata
ENSPLAG00000012071	smn1	100	66.078	ENSTRUG00000000736	smn	100	68.551	Takifugu_rubripes
ENSPLAG00000012071	smn1	100	65.172	ENSTNIG00000009892	smn1	100	67.586	Tetraodon_nigroviridis
ENSPLAG00000012071	smn1	59	61.146	ENSTBEG00000002399	-	86	55.866	Tupaia_belangeri
ENSPLAG00000012071	smn1	59	59.615	ENSTTRG00000005080	-	91	53.069	Tursiops_truncatus
ENSPLAG00000012071	smn1	59	61.538	ENSUAMG00000024947	-	63	57.143	Ursus_americanus
ENSPLAG00000012071	smn1	94	53.480	ENSUMAG00000007842	-	69	54.579	Ursus_maritimus
ENSPLAG00000012071	smn1	63	77.778	ENSVPAG00000009887	-	93	49.811	Vicugna_pacos
ENSPLAG00000012071	smn1	94	53.846	ENSVVUG00000006934	-	93	54.212	Vulpes_vulpes
ENSPLAG00000012071	smn1	95	56.679	ENSXETG00000018189	smn2	95	55.789	Xenopus_tropicalis
ENSPLAG00000012071	smn1	51	63.793	ENSXETG00000004912	-	80	63.793	Xenopus_tropicalis
ENSPLAG00000012071	smn1	100	97.276	ENSXMAG00000001521	smn1	100	97.276	Xiphophorus_maculatus