EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSPLAG00000013855 (Gene tree)
Gene ID: 106962760
Gene Symbol: trub1
Alias: -
Full Name: TruB pseudouridine synthase family member 1
Gene Type: protein_coding
Species: Poecilia_latipinna
Status: putative
Strand: Minus strand
Length: 4902 bases
Position: chrKQ546771.1:132374-137275
Accession: 106962760
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPLAP00000010854	TruB_N	PF01509.18	4.8e-46	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPLAT00000018089	-	2556	XM_015057371	ENSPLAP00000010854	285 (aa)	XP_014912857	UPI00072DB08C

Gene Model

Click here to download ENSPLAG00000013855's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPLAG00000013855's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSPLAG00000013855	trub1	69	33.500	ENSPLAG00000010484	trub2	57	33.500

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPLAG00000013855	trub1	86	66.122	ENSG00000165832	TRUB1	70	66.122	Homo_sapiens
ENSPLAG00000013855	trub1	86	84.836	ENSAPOG00000020565	trub1	99	80.220	Acanthochromis_polyacanthus
ENSPLAG00000013855	trub1	86	65.992	ENSAMEG00000014931	TRUB1	70	65.992	Ailuropoda_melanoleuca
ENSPLAG00000013855	trub1	94	77.323	ENSACIG00000003060	trub1	90	77.323	Amphilophus_citrinellus
ENSPLAG00000013855	trub1	86	84.836	ENSAOCG00000017188	trub1	99	80.220	Amphiprion_ocellaris
ENSPLAG00000013855	trub1	91	83.142	ENSAPEG00000015209	trub1	99	80.220	Amphiprion_percula
ENSPLAG00000013855	trub1	86	84.553	ENSATEG00000023291	trub1	88	84.553	Anabas_testudineus
ENSPLAG00000013855	trub1	86	67.623	ENSAPLG00000006808	TRUB1	87	67.623	Anas_platyrhynchos
ENSPLAG00000013855	trub1	86	64.082	ENSACAG00000009282	TRUB1	88	64.082	Anolis_carolinensis
ENSPLAG00000013855	trub1	86	66.122	ENSANAG00000022870	TRUB1	70	66.122	Aotus_nancymaae
ENSPLAG00000013855	trub1	95	81.250	ENSACLG00000000823	trub1	98	81.250	Astatotilapia_calliptera
ENSPLAG00000013855	trub1	87	77.510	ENSAMXG00000015845	trub1	83	77.510	Astyanax_mexicanus
ENSPLAG00000013855	trub1	86	66.939	ENSBTAG00000012955	TRUB1	70	66.939	Bos_taurus
ENSPLAG00000013855	trub1	86	66.122	ENSCJAG00000047815	TRUB1	70	66.122	Callithrix_jacchus
ENSPLAG00000013855	trub1	86	66.531	ENSCAFG00000011688	TRUB1	78	63.004	Canis_familiaris
ENSPLAG00000013855	trub1	86	66.531	ENSCAFG00020013237	TRUB1	78	63.004	Canis_lupus_dingo
ENSPLAG00000013855	trub1	86	66.531	ENSCHIG00000020884	TRUB1	73	66.531	Capra_hircus
ENSPLAG00000013855	trub1	86	64.898	ENSTSYG00000000446	TRUB1	70	64.898	Carlito_syrichta
ENSPLAG00000013855	trub1	74	59.242	ENSCAPG00000017088	TRUB1	82	59.242	Cavia_aperea
ENSPLAG00000013855	trub1	65	64.516	ENSCPOG00000030129	-	72	64.516	Cavia_porcellus
ENSPLAG00000013855	trub1	64	65.574	ENSCPOG00000040236	-	75	65.574	Cavia_porcellus
ENSPLAG00000013855	trub1	86	66.122	ENSCCAG00000028842	TRUB1	70	66.122	Cebus_capucinus
ENSPLAG00000013855	trub1	86	66.122	ENSCATG00000033431	TRUB1	70	66.122	Cercocebus_atys
ENSPLAG00000013855	trub1	64	64.481	ENSCLAG00000008664	TRUB1	75	64.481	Chinchilla_lanigera
ENSPLAG00000013855	trub1	86	66.122	ENSCSAG00000004891	TRUB1	70	66.122	Chlorocebus_sabaeus
ENSPLAG00000013855	trub1	85	59.259	ENSCHOG00000011931	TRUB1	70	59.259	Choloepus_hoffmanni
ENSPLAG00000013855	trub1	91	67.176	ENSCPBG00000003051	TRUB1	90	67.176	Chrysemys_picta_bellii
ENSPLAG00000013855	trub1	86	66.122	ENSCANG00000029445	TRUB1	70	66.122	Colobus_angolensis_palliatus
ENSPLAG00000013855	trub1	84	57.563	ENSCGRG00001010322	-	66	57.143	Cricetulus_griseus_chok1gshd
ENSPLAG00000013855	trub1	74	66.509	ENSCGRG00001016772	-	71	66.355	Cricetulus_griseus_chok1gshd
ENSPLAG00000013855	trub1	84	65.126	ENSCGRG00000010806	Trub1	81	62.264	Cricetulus_griseus_crigri
ENSPLAG00000013855	trub1	89	78.656	ENSCSEG00000011261	trub1	82	78.656	Cynoglossus_semilaevis
ENSPLAG00000013855	trub1	89	85.098	ENSCVAG00000008791	trub1	78	85.098	Cyprinodon_variegatus
ENSPLAG00000013855	trub1	93	70.149	ENSDARG00000053805	trub1	92	70.149	Danio_rerio
ENSPLAG00000013855	trub1	86	64.082	ENSDNOG00000001069	TRUB1	70	64.082	Dasypus_novemcinctus
ENSPLAG00000013855	trub1	84	65.546	ENSDORG00000010431	Trub1	78	61.852	Dipodomys_ordii
ENSPLAG00000013855	trub1	63	64.234	ENSETEG00000009183	TRUB1	50	64.234	Echinops_telfairi
ENSPLAG00000013855	trub1	86	65.306	ENSEASG00005014739	TRUB1	70	65.306	Equus_asinus_asinus
ENSPLAG00000013855	trub1	86	65.306	ENSECAG00000007177	TRUB1	70	65.306	Equus_caballus
ENSPLAG00000013855	trub1	86	57.959	ENSEEUG00000013993	TRUB1	72	56.923	Erinaceus_europaeus
ENSPLAG00000013855	trub1	92	77.778	ENSELUG00000000502	trub1	91	77.778	Esox_lucius
ENSPLAG00000013855	trub1	86	66.531	ENSFCAG00000031927	TRUB1	70	66.531	Felis_catus
ENSPLAG00000013855	trub1	75	67.442	ENSFALG00000002232	TRUB1	83	67.442	Ficedula_albicollis
ENSPLAG00000013855	trub1	64	66.120	ENSFDAG00000008140	TRUB1	75	66.120	Fukomys_damarensis
ENSPLAG00000013855	trub1	96	86.182	ENSFHEG00000004016	trub1	95	86.182	Fundulus_heteroclitus
ENSPLAG00000013855	trub1	87	65.587	ENSGALG00000009091	TRUB1	87	65.587	Gallus_gallus
ENSPLAG00000013855	trub1	90	94.553	ENSGAFG00000009193	trub1	90	94.553	Gambusia_affinis
ENSPLAG00000013855	trub1	69	85.204	ENSGACG00000015387	trub1	96	85.204	Gasterosteus_aculeatus
ENSPLAG00000013855	trub1	93	66.418	ENSGAGG00000009758	TRUB1	70	70.204	Gopherus_agassizii
ENSPLAG00000013855	trub1	86	66.122	ENSGGOG00000004583	TRUB1	70	66.122	Gorilla_gorilla
ENSPLAG00000013855	trub1	95	80.882	ENSHBUG00000016787	trub1	98	80.882	Haplochromis_burtoni
ENSPLAG00000013855	trub1	86	64.490	ENSHGLG00000015314	TRUB1	70	64.490	Heterocephalus_glaber_female
ENSPLAG00000013855	trub1	64	65.574	ENSHGLG00100009183	TRUB1	77	65.574	Heterocephalus_glaber_male
ENSPLAG00000013855	trub1	97	78.777	ENSHCOG00000017877	trub1	100	78.777	Hippocampus_comes
ENSPLAG00000013855	trub1	87	78.138	ENSIPUG00000017559	trub1	87	78.138	Ictalurus_punctatus
ENSPLAG00000013855	trub1	82	68.085	ENSSTOG00000003641	TRUB1	71	68.085	Ictidomys_tridecemlineatus
ENSPLAG00000013855	trub1	86	65.306	ENSJJAG00000011800	Trub1	72	65.306	Jaculus_jaculus
ENSPLAG00000013855	trub1	97	79.856	ENSKMAG00000006232	trub1	100	79.856	Kryptolebias_marmoratus
ENSPLAG00000013855	trub1	95	79.779	ENSLBEG00000026722	trub1	95	79.779	Labrus_bergylta
ENSPLAG00000013855	trub1	91	72.093	ENSLACG00000014885	TRUB1	86	72.093	Latimeria_chalumnae
ENSPLAG00000013855	trub1	91	74.231	ENSLOCG00000012979	trub1	88	74.231	Lepisosteus_oculatus
ENSPLAG00000013855	trub1	87	65.873	ENSLAFG00000015452	TRUB1	72	65.873	Loxodonta_africana
ENSPLAG00000013855	trub1	86	66.122	ENSMFAG00000031767	TRUB1	70	66.122	Macaca_fascicularis
ENSPLAG00000013855	trub1	86	66.122	ENSMMUG00000001902	TRUB1	70	66.122	Macaca_mulatta
ENSPLAG00000013855	trub1	86	60.408	ENSMNEG00000044646	TRUB1	69	60.408	Macaca_nemestrina
ENSPLAG00000013855	trub1	86	66.122	ENSMLEG00000042655	TRUB1	70	66.122	Mandrillus_leucophaeus
ENSPLAG00000013855	trub1	95	81.250	ENSMZEG00005024095	trub1	98	81.250	Maylandia_zebra
ENSPLAG00000013855	trub1	87	66.397	ENSMGAG00000011135	TRUB1	85	66.397	Meleagris_gallopavo
ENSPLAG00000013855	trub1	84	63.025	ENSMAUG00000011101	Trub1	72	62.857	Mesocricetus_auratus
ENSPLAG00000013855	trub1	86	65.714	ENSMICG00000016324	TRUB1	70	65.714	Microcebus_murinus
ENSPLAG00000013855	trub1	84	66.109	ENSMOCG00000017759	Trub1	79	62.921	Microtus_ochrogaster
ENSPLAG00000013855	trub1	86	67.213	ENSMODG00000009676	TRUB1	74	62.547	Monodelphis_domestica
ENSPLAG00000013855	trub1	86	66.129	MGP_CAROLIEiJ_G0023100	Trub1	76	67.380	Mus_caroli
ENSPLAG00000013855	trub1	86	65.323	ENSMUSG00000025086	Trub1	76	66.310	Mus_musculus
ENSPLAG00000013855	trub1	87	65.079	MGP_PahariEiJ_G0014588	Trub1	75	65.079	Mus_pahari
ENSPLAG00000013855	trub1	86	65.323	MGP_SPRETEiJ_G0024021	Trub1	76	66.310	Mus_spretus
ENSPLAG00000013855	trub1	86	66.531	ENSMPUG00000003556	TRUB1	70	66.531	Mustela_putorius_furo
ENSPLAG00000013855	trub1	86	65.306	ENSMLUG00000017686	TRUB1	79	62.222	Myotis_lucifugus
ENSPLAG00000013855	trub1	86	65.306	ENSNGAG00000018682	Trub1	70	65.306	Nannospalax_galili
ENSPLAG00000013855	trub1	89	82.745	ENSNBRG00000023393	trub1	91	82.745	Neolamprologus_brichardi
ENSPLAG00000013855	trub1	86	66.122	ENSNLEG00000016345	TRUB1	70	66.122	Nomascus_leucogenys
ENSPLAG00000013855	trub1	71	70.149	ENSMEUG00000006603	TRUB1	83	65.333	Notamacropus_eugenii
ENSPLAG00000013855	trub1	92	62.738	ENSOPRG00000009371	TRUB1	71	65.306	Ochotona_princeps
ENSPLAG00000013855	trub1	86	64.082	ENSODEG00000010854	TRUB1	70	64.082	Octodon_degus
ENSPLAG00000013855	trub1	94	81.041	ENSONIG00000007249	trub1	98	81.041	Oreochromis_niloticus
ENSPLAG00000013855	trub1	87	66.129	ENSOANG00000001556	TRUB1	87	64.015	Ornithorhynchus_anatinus
ENSPLAG00000013855	trub1	86	65.306	ENSOCUG00000009456	TRUB1	71	65.306	Oryctolagus_cuniculus
ENSPLAG00000013855	trub1	95	80.220	ENSORLG00000029719	trub1	98	80.220	Oryzias_latipes
ENSPLAG00000013855	trub1	95	79.853	ENSORLG00020016767	trub1	96	79.853	Oryzias_latipes_hni
ENSPLAG00000013855	trub1	95	79.121	ENSORLG00015014728	trub1	98	79.121	Oryzias_latipes_hsok
ENSPLAG00000013855	trub1	91	81.609	ENSOMEG00000014556	trub1	92	81.609	Oryzias_melastigma
ENSPLAG00000013855	trub1	86	66.122	ENSOGAG00000015895	TRUB1	70	66.122	Otolemur_garnettii
ENSPLAG00000013855	trub1	86	64.683	ENSOARG00000015591	TRUB1	78	61.314	Ovis_aries
ENSPLAG00000013855	trub1	86	66.122	ENSPPAG00000043645	TRUB1	70	66.122	Pan_paniscus
ENSPLAG00000013855	trub1	86	66.122	ENSPPRG00000007096	TRUB1	70	66.122	Panthera_pardus
ENSPLAG00000013855	trub1	86	66.122	ENSPTIG00000006378	TRUB1	70	66.122	Panthera_tigris_altaica
ENSPLAG00000013855	trub1	86	66.122	ENSPTRG00000002964	TRUB1	70	66.122	Pan_troglodytes
ENSPLAG00000013855	trub1	86	66.122	ENSPANG00000020712	TRUB1	70	66.122	Papio_anubis
ENSPLAG00000013855	trub1	60	77.778	ENSPKIG00000003852	trub1	74	77.778	Paramormyrops_kingsleyae
ENSPLAG00000013855	trub1	91	67.816	ENSPSIG00000012877	TRUB1	90	67.816	Pelodiscus_sinensis
ENSPLAG00000013855	trub1	94	75.655	ENSPMGG00000000075	trub1	94	75.655	Periophthalmus_magnuspinnatus
ENSPLAG00000013855	trub1	92	63.396	ENSPEMG00000011156	Trub1	78	63.396	Peromyscus_maniculatus_bairdii
ENSPLAG00000013855	trub1	86	67.213	ENSPCIG00000009729	TRUB1	73	63.060	Phascolarctos_cinereus
ENSPLAG00000013855	trub1	96	99.634	ENSPFOG00000009950	trub1	100	99.634	Poecilia_formosa
ENSPLAG00000013855	trub1	97	99.278	ENSPMEG00000009064	trub1	100	99.278	Poecilia_mexicana
ENSPLAG00000013855	trub1	97	97.112	ENSPREG00000003343	trub1	100	97.112	Poecilia_reticulata
ENSPLAG00000013855	trub1	86	65.714	ENSPPYG00000002676	TRUB1	70	65.714	Pongo_abelii
ENSPLAG00000013855	trub1	93	57.836	ENSPCAG00000008427	TRUB1	72	59.921	Procavia_capensis
ENSPLAG00000013855	trub1	86	60.000	ENSPCOG00000024360	TRUB1	68	60.000	Propithecus_coquereli
ENSPLAG00000013855	trub1	71	68.812	ENSPVAG00000007575	TRUB1	77	68.812	Pteropus_vampyrus
ENSPLAG00000013855	trub1	95	81.250	ENSPNYG00000018614	trub1	98	81.250	Pundamilia_nyererei
ENSPLAG00000013855	trub1	92	65.267	ENSPNAG00000006881	trub1	83	65.267	Pygocentrus_nattereri
ENSPLAG00000013855	trub1	87	64.286	ENSRNOG00000017321	Trub1	82	60.573	Rattus_norvegicus
ENSPLAG00000013855	trub1	86	57.085	ENSRBIG00000033423	TRUB1	68	57.085	Rhinopithecus_bieti
ENSPLAG00000013855	trub1	86	66.122	ENSRROG00000033902	TRUB1	70	66.122	Rhinopithecus_roxellana
ENSPLAG00000013855	trub1	86	66.122	ENSSBOG00000024237	TRUB1	70	66.122	Saimiri_boliviensis_boliviensis
ENSPLAG00000013855	trub1	75	68.372	ENSSHAG00000009346	TRUB1	72	68.372	Sarcophilus_harrisii
ENSPLAG00000013855	trub1	92	75.758	ENSSFOG00015022124	trub1	90	75.758	Scleropages_formosus
ENSPLAG00000013855	trub1	95	81.618	ENSSMAG00000001020	trub1	97	81.618	Scophthalmus_maximus
ENSPLAG00000013855	trub1	94	80.669	ENSSDUG00000016414	trub1	97	83.271	Seriola_dumerili
ENSPLAG00000013855	trub1	94	80.297	ENSSLDG00000015486	trub1	97	82.900	Seriola_lalandi_dorsalis
ENSPLAG00000013855	trub1	91	66.160	ENSSPUG00000001642	TRUB1	90	66.160	Sphenodon_punctatus
ENSPLAG00000013855	trub1	97	80.216	ENSSPAG00000001217	trub1	100	80.216	Stegastes_partitus
ENSPLAG00000013855	trub1	87	65.476	ENSSSCG00000010653	TRUB1	73	65.476	Sus_scrofa
ENSPLAG00000013855	trub1	86	67.213	ENSTGUG00000010971	TRUB1	91	65.098	Taeniopygia_guttata
ENSPLAG00000013855	trub1	74	56.872	ENSTBEG00000002880	TRUB1	83	56.872	Tupaia_belangeri
ENSPLAG00000013855	trub1	71	68.317	ENSTTRG00000005767	TRUB1	77	68.317	Tursiops_truncatus
ENSPLAG00000013855	trub1	86	66.531	ENSUAMG00000024876	TRUB1	70	66.531	Ursus_americanus
ENSPLAG00000013855	trub1	86	66.531	ENSUMAG00000002411	TRUB1	72	68.306	Ursus_maritimus
ENSPLAG00000013855	trub1	86	66.531	ENSVPAG00000005507	TRUB1	70	66.531	Vicugna_pacos
ENSPLAG00000013855	trub1	86	66.531	ENSVVUG00000010085	TRUB1	59	66.531	Vulpes_vulpes
ENSPLAG00000013855	trub1	86	68.163	ENSXETG00000023828	trub1	88	68.163	Xenopus_tropicalis
ENSPLAG00000013855	trub1	88	96.800	ENSXCOG00000017847	trub1	88	96.800	Xiphophorus_couchianus
ENSPLAG00000013855	trub1	97	96.029	ENSXMAG00000014701	trub1	100	96.029	Xiphophorus_maculatus