EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSPLAG00000016232 (Gene tree)
Gene ID: 106944920
Gene Symbol: -
Alias: -
Full Name: UPF1%2C RNA helicase and ATPase
Gene Type: protein_coding
Species: Poecilia_latipinna
Status: putative
Strand: Plus strand
Length: 20451 bases
Position: chrKQ545433.1:294971-315421
Accession: 106944920
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPLAP00000027526	UPF1_Zn_bind	PF09416.10	1.6e-74	1	1
ENSPLAP00000027526	ResIII	PF04851.15	2.9e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPLAT00000020617	-	6428	XM_015028253	ENSPLAP00000027526	1097 (aa)	XP_014883739	UPI0004441DCA

Gene Model

Click here to download ENSPLAG00000016232's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPLAG00000016232's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSPLAG00000016232	-	100	90.999	ENSPLAG00000018155	-	100	90.369

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPLAG00000016232	-	100	92.232	ENSG00000005007	UPF1	100	92.321	Homo_sapiens
ENSPLAG00000016232	-	100	93.194	ENSAPOG00000023773	upf1	100	93.103	Acanthochromis_polyacanthus
ENSPLAG00000016232	-	100	98.365	ENSAPOG00000010916	-	100	98.365	Acanthochromis_polyacanthus
ENSPLAG00000016232	-	100	91.563	ENSAMEG00000011474	UPF1	100	91.652	Ailuropoda_melanoleuca
ENSPLAG00000016232	-	100	93.273	ENSACIG00000019949	upf1	100	93.091	Amphilophus_citrinellus
ENSPLAG00000016232	-	93	97.854	ENSACIG00000010985	-	100	97.854	Amphilophus_citrinellus
ENSPLAG00000016232	-	100	92.707	ENSAOCG00000018519	upf1	100	92.616	Amphiprion_ocellaris
ENSPLAG00000016232	-	100	98.274	ENSAOCG00000006352	-	100	98.274	Amphiprion_ocellaris
ENSPLAG00000016232	-	100	92.707	ENSAPEG00000016344	upf1	100	92.616	Amphiprion_percula
ENSPLAG00000016232	-	100	98.183	ENSAPEG00000006292	-	100	98.183	Amphiprion_percula
ENSPLAG00000016232	-	100	91.324	ENSATEG00000017867	upf1	100	92.039	Anabas_testudineus
ENSPLAG00000016232	-	100	98.183	ENSATEG00000016606	-	100	98.183	Anabas_testudineus
ENSPLAG00000016232	-	95	93.555	ENSAPLG00000009175	UPF1	100	93.555	Anas_platyrhynchos
ENSPLAG00000016232	-	95	92.300	ENSANAG00000024107	UPF1	95	92.300	Aotus_nancymaae
ENSPLAG00000016232	-	100	98.094	ENSACLG00000022630	-	100	98.094	Astatotilapia_calliptera
ENSPLAG00000016232	-	100	93.019	ENSACLG00000007181	upf1	100	93.000	Astatotilapia_calliptera
ENSPLAG00000016232	-	100	93.841	ENSAMXG00000042187	upf1	100	93.654	Astyanax_mexicanus
ENSPLAG00000016232	-	100	91.578	ENSBTAG00000020922	UPF1	100	91.667	Bos_taurus
ENSPLAG00000016232	-	97	49.677	WBGene00004880	smg-2	99	49.493	Caenorhabditis_elegans
ENSPLAG00000016232	-	100	91.335	ENSCJAG00000019627	UPF1	100	91.424	Callithrix_jacchus
ENSPLAG00000016232	-	100	91.335	ENSCAFG00000014578	UPF1	100	91.424	Canis_familiaris
ENSPLAG00000016232	-	100	92.232	ENSCAFG00020012347	UPF1	100	92.321	Canis_lupus_dingo
ENSPLAG00000016232	-	100	92.480	ENSCHIG00000011018	UPF1	100	92.569	Capra_hircus
ENSPLAG00000016232	-	95	93.441	ENSTSYG00000008877	UPF1	98	93.441	Carlito_syrichta
ENSPLAG00000016232	-	96	92.763	ENSCAPG00000005758	UPF1	95	92.871	Cavia_aperea
ENSPLAG00000016232	-	100	92.446	ENSCPOG00000025463	UPF1	100	91.996	Cavia_porcellus
ENSPLAG00000016232	-	100	92.232	ENSCCAG00000032175	UPF1	100	92.321	Cebus_capucinus
ENSPLAG00000016232	-	94	93.887	ENSCATG00000040306	UPF1	97	93.887	Cercocebus_atys
ENSPLAG00000016232	-	95	93.631	ENSCLAG00000004037	UPF1	99	93.156	Chinchilla_lanigera
ENSPLAG00000016232	-	100	92.232	ENSCSAG00000005276	UPF1	100	92.321	Chlorocebus_sabaeus
ENSPLAG00000016232	-	100	92.377	ENSCPBG00000012513	UPF1	100	92.280	Chrysemys_picta_bellii
ENSPLAG00000016232	-	77	79.508	ENSCING00000021399	-	99	78.429	Ciona_intestinalis
ENSPLAG00000016232	-	99	73.129	ENSCSAVG00000006533	-	99	73.129	Ciona_savignyi
ENSPLAG00000016232	-	95	93.631	ENSCANG00000029819	UPF1	97	93.631	Colobus_angolensis_palliatus
ENSPLAG00000016232	-	100	92.018	ENSCGRG00001021067	Upf1	100	91.659	Cricetulus_griseus_chok1gshd
ENSPLAG00000016232	-	95	92.966	ENSCGRG00000013480	Upf1	98	92.490	Cricetulus_griseus_crigri
ENSPLAG00000016232	-	100	88.171	ENSCSEG00000017239	upf1	100	88.193	Cynoglossus_semilaevis
ENSPLAG00000016232	-	100	97.816	ENSCSEG00000016159	-	100	97.816	Cynoglossus_semilaevis
ENSPLAG00000016232	-	100	99.273	ENSCVAG00000010561	upf1	100	99.273	Cyprinodon_variegatus
ENSPLAG00000016232	-	100	93.200	ENSDARG00000016302	upf1	100	93.472	Danio_rerio
ENSPLAG00000016232	-	95	91.065	ENSDORG00000009984	Upf1	95	90.589	Dipodomys_ordii
ENSPLAG00000016232	-	86	71.609	FBgn0030354	Upf1	81	71.058	Drosophila_melanogaster
ENSPLAG00000016232	-	55	86.281	ENSEBUG00000010069	upf1	96	86.612	Eptatretus_burgeri
ENSPLAG00000016232	-	100	92.390	ENSEASG00005006549	UPF1	100	92.480	Equus_asinus_asinus
ENSPLAG00000016232	-	100	92.390	ENSECAG00000010639	UPF1	100	92.480	Equus_caballus
ENSPLAG00000016232	-	100	92.419	ENSELUG00000020917	upf1	100	91.968	Esox_lucius
ENSPLAG00000016232	-	100	94.409	ENSELUG00000012916	-	100	94.500	Esox_lucius
ENSPLAG00000016232	-	100	91.247	ENSFCAG00000009757	UPF1	100	91.335	Felis_catus
ENSPLAG00000016232	-	95	94.185	ENSFALG00000009312	UPF1	96	94.084	Ficedula_albicollis
ENSPLAG00000016232	-	95	93.536	ENSFDAG00000014816	UPF1	99	93.061	Fukomys_damarensis
ENSPLAG00000016232	-	100	89.167	ENSFHEG00000006428	upf1	100	88.899	Fundulus_heteroclitus
ENSPLAG00000016232	-	86	99.002	ENSFHEG00000016276	-	96	99.002	Fundulus_heteroclitus
ENSPLAG00000016232	-	100	94.590	ENSGMOG00000007541	upf1	100	94.865	Gadus_morhua
ENSPLAG00000016232	-	100	92.218	ENSGALG00000003220	UPF1	100	92.129	Gallus_gallus
ENSPLAG00000016232	-	63	94.524	ENSGAFG00000015443	-	85	94.524	Gambusia_affinis
ENSPLAG00000016232	-	100	99.909	ENSGAFG00000004831	upf1	100	99.909	Gambusia_affinis
ENSPLAG00000016232	-	100	92.786	ENSGAGG00000022217	UPF1	100	92.876	Gopherus_agassizii
ENSPLAG00000016232	-	95	94.621	ENSGGOG00000002608	UPF1	99	94.621	Gorilla_gorilla
ENSPLAG00000016232	-	91	81.768	ENSHBUG00000014694	upf1	100	84.444	Haplochromis_burtoni
ENSPLAG00000016232	-	87	100.000	ENSHBUG00000008939	upf1	95	100.000	Haplochromis_burtoni
ENSPLAG00000016232	-	100	91.070	ENSHGLG00000010900	UPF1	100	91.158	Heterocephalus_glaber_female
ENSPLAG00000016232	-	95	91.730	ENSHGLG00100005904	UPF1	96	91.730	Heterocephalus_glaber_male
ENSPLAG00000016232	-	100	97.545	ENSHCOG00000008918	upf1	100	97.545	Hippocampus_comes
ENSPLAG00000016232	-	100	93.841	ENSIPUG00000005108	UPF1	100	93.654	Ictalurus_punctatus
ENSPLAG00000016232	-	100	92.232	ENSSTOG00000009196	UPF1	100	91.875	Ictidomys_tridecemlineatus
ENSPLAG00000016232	-	100	91.281	ENSJJAG00000023151	Upf1	100	90.925	Jaculus_jaculus
ENSPLAG00000016232	-	100	98.819	ENSKMAG00000004962	upf1	100	98.819	Kryptolebias_marmoratus
ENSPLAG00000016232	-	100	91.398	ENSLBEG00000014862	upf1	100	91.577	Labrus_bergylta
ENSPLAG00000016232	-	100	97.459	ENSLBEG00000027848	-	100	97.459	Labrus_bergylta
ENSPLAG00000016232	-	63	94.413	ENSLACG00000008482	UPF1	100	94.413	Latimeria_chalumnae
ENSPLAG00000016232	-	100	95.186	ENSLOCG00000002072	upf1	100	95.186	Lepisosteus_oculatus
ENSPLAG00000016232	-	100	90.877	ENSLAFG00000014963	UPF1	100	90.965	Loxodonta_africana
ENSPLAG00000016232	-	100	91.986	ENSMFAG00000037748	UPF1	100	92.075	Macaca_fascicularis
ENSPLAG00000016232	-	100	91.741	ENSMMUG00000023286	UPF1	100	91.829	Macaca_mulatta
ENSPLAG00000016232	-	100	91.986	ENSMNEG00000000046	UPF1	100	92.075	Macaca_nemestrina
ENSPLAG00000016232	-	95	93.631	ENSMLEG00000028404	UPF1	99	93.631	Mandrillus_leucophaeus
ENSPLAG00000016232	-	100	91.771	ENSMAMG00000006229	upf1	100	92.487	Mastacembelus_armatus
ENSPLAG00000016232	-	100	97.641	ENSMAMG00000006231	-	100	97.641	Mastacembelus_armatus
ENSPLAG00000016232	-	100	98.094	ENSMZEG00005016386	-	100	98.094	Maylandia_zebra
ENSPLAG00000016232	-	100	91.935	ENSMZEG00005003489	upf1	100	92.273	Maylandia_zebra
ENSPLAG00000016232	-	95	93.162	ENSMGAG00000004745	UPF1	100	93.162	Meleagris_gallopavo
ENSPLAG00000016232	-	95	92.966	ENSMAUG00000011398	Upf1	95	92.490	Mesocricetus_auratus
ENSPLAG00000016232	-	100	92.143	ENSMICG00000001659	UPF1	100	92.232	Microcebus_murinus
ENSPLAG00000016232	-	100	91.119	ENSMOCG00000005699	Upf1	100	90.853	Microtus_ochrogaster
ENSPLAG00000016232	-	95	95.885	ENSMMOG00000007537	-	99	95.885	Mola_mola
ENSPLAG00000016232	-	100	92.343	ENSMMOG00000007881	upf1	100	92.623	Mola_mola
ENSPLAG00000016232	-	100	91.093	ENSMODG00000003689	UPF1	100	91.270	Monodelphis_domestica
ENSPLAG00000016232	-	100	92.616	ENSMALG00000000144	upf1	100	92.616	Monopterus_albus
ENSPLAG00000016232	-	100	96.018	ENSMALG00000018100	-	100	96.018	Monopterus_albus
ENSPLAG00000016232	-	100	91.928	MGP_CAROLIEiJ_G0031142	Upf1	100	91.570	Mus_caroli
ENSPLAG00000016232	-	100	91.928	ENSMUSG00000058301	Upf1	100	91.570	Mus_musculus
ENSPLAG00000016232	-	100	91.928	MGP_PahariEiJ_G0021607	Upf1	100	91.570	Mus_pahari
ENSPLAG00000016232	-	100	91.928	MGP_SPRETEiJ_G0032260	Upf1	100	91.570	Mus_spretus
ENSPLAG00000016232	-	100	92.232	ENSMPUG00000015516	UPF1	100	92.321	Mustela_putorius_furo
ENSPLAG00000016232	-	99	92.025	ENSMLUG00000012122	UPF1	99	92.115	Myotis_lucifugus
ENSPLAG00000016232	-	100	90.788	ENSNGAG00000024107	Upf1	100	90.434	Nannospalax_galili
ENSPLAG00000016232	-	100	94.488	ENSNBRG00000022069	-	100	97.184	Neolamprologus_brichardi
ENSPLAG00000016232	-	100	91.364	ENSNBRG00000000670	upf1	100	91.182	Neolamprologus_brichardi
ENSPLAG00000016232	-	95	87.833	ENSNLEG00000006062	UPF1	99	87.833	Nomascus_leucogenys
ENSPLAG00000016232	-	83	88.845	ENSMEUG00000014146	-	83	88.845	Notamacropus_eugenii
ENSPLAG00000016232	-	95	87.416	ENSOPRG00000014018	UPF1	99	87.416	Ochotona_princeps
ENSPLAG00000016232	-	100	92.619	ENSODEG00000012426	UPF1	100	92.169	Octodon_degus
ENSPLAG00000016232	-	100	92.115	ENSONIG00000010452	upf1	100	92.453	Oreochromis_niloticus
ENSPLAG00000016232	-	100	98.094	ENSONIG00000012729	-	100	98.094	Oreochromis_niloticus
ENSPLAG00000016232	-	100	91.312	ENSOANG00000004568	UPF1	100	91.223	Ornithorhynchus_anatinus
ENSPLAG00000016232	-	100	97.457	ENSORLG00000008453	upf1	100	97.457	Oryzias_latipes
ENSPLAG00000016232	-	100	97.368	ENSORLG00020014758	upf1	100	97.368	Oryzias_latipes_hni
ENSPLAG00000016232	-	100	97.368	ENSORLG00015010165	upf1	100	97.368	Oryzias_latipes_hsok
ENSPLAG00000016232	-	100	97.911	ENSOMEG00000003665	upf1	100	97.911	Oryzias_melastigma
ENSPLAG00000016232	-	100	92.321	ENSOGAG00000012866	UPF1	100	92.411	Otolemur_garnettii
ENSPLAG00000016232	-	96	90.524	ENSOARG00000010739	UPF1	100	90.340	Ovis_aries
ENSPLAG00000016232	-	95	93.466	ENSPPAG00000043884	UPF1	96	93.466	Pan_paniscus
ENSPLAG00000016232	-	100	91.247	ENSPPRG00000023470	UPF1	100	91.335	Panthera_pardus
ENSPLAG00000016232	-	95	92.234	ENSPTIG00000010159	UPF1	99	92.234	Panthera_tigris_altaica
ENSPLAG00000016232	-	100	91.986	ENSPTRG00000010721	UPF1	100	92.075	Pan_troglodytes
ENSPLAG00000016232	-	100	91.986	ENSPANG00000008847	UPF1	100	92.075	Papio_anubis
ENSPLAG00000016232	-	92	94.940	ENSPKIG00000006069	upf1	95	95.871	Paramormyrops_kingsleyae
ENSPLAG00000016232	-	70	93.342	ENSPSIG00000009491	UPF1	100	93.342	Pelodiscus_sinensis
ENSPLAG00000016232	-	100	90.769	ENSPMGG00000017327	upf1	100	90.679	Periophthalmus_magnuspinnatus
ENSPLAG00000016232	-	100	91.119	ENSPEMG00000001085	Upf1	100	90.764	Peromyscus_maniculatus_bairdii
ENSPLAG00000016232	-	100	87.805	ENSPMAG00000001206	upf1	100	87.805	Petromyzon_marinus
ENSPLAG00000016232	-	100	92.493	ENSPCIG00000006156	UPF1	100	92.583	Phascolarctos_cinereus
ENSPLAG00000016232	-	100	91.568	ENSPMEG00000011443	-	100	91.530	Poecilia_mexicana
ENSPLAG00000016232	-	100	99.909	ENSPMEG00000016319	-	100	99.909	Poecilia_mexicana
ENSPLAG00000016232	-	100	91.285	ENSPREG00000009940	upf1	100	90.925	Poecilia_reticulata
ENSPLAG00000016232	-	100	99.727	ENSPREG00000011247	-	100	99.727	Poecilia_reticulata
ENSPLAG00000016232	-	100	86.472	ENSPPYG00000009752	UPF1	100	86.460	Pongo_abelii
ENSPLAG00000016232	-	75	98.653	ENSPCAG00000012962	UPF1	76	98.653	Procavia_capensis
ENSPLAG00000016232	-	100	91.733	ENSPCOG00000023813	UPF1	100	91.822	Propithecus_coquereli
ENSPLAG00000016232	-	68	100.000	ENSPVAG00000003183	UPF1	69	100.000	Pteropus_vampyrus
ENSPLAG00000016232	-	100	91.935	ENSPNYG00000003694	upf1	100	92.273	Pundamilia_nyererei
ENSPLAG00000016232	-	100	98.094	ENSPNYG00000016731	-	100	98.094	Pundamilia_nyererei
ENSPLAG00000016232	-	100	93.569	ENSPNAG00000025614	upf1	100	93.382	Pygocentrus_nattereri
ENSPLAG00000016232	-	100	91.928	ENSRNOG00000020134	Upf1	100	91.570	Rattus_norvegicus
ENSPLAG00000016232	-	95	91.255	ENSRBIG00000013894	UPF1	98	94.530	Rhinopithecus_bieti
ENSPLAG00000016232	-	95	93.631	ENSRROG00000040935	UPF1	98	94.530	Rhinopithecus_roxellana
ENSPLAG00000016232	-	73	57.822	YMR080C	NAM7	82	57.822	Saccharomyces_cerevisiae
ENSPLAG00000016232	-	94	93.887	ENSSBOG00000023632	UPF1	96	93.887	Saimiri_boliviensis_boliviensis
ENSPLAG00000016232	-	95	93.548	ENSSHAG00000010499	UPF1	100	93.548	Sarcophilus_harrisii
ENSPLAG00000016232	-	100	95.009	ENSSFOG00015021095	upf1	100	95.009	Scleropages_formosus
ENSPLAG00000016232	-	100	98.004	ENSSMAG00000021018	-	100	98.004	Scophthalmus_maximus
ENSPLAG00000016232	-	100	91.129	ENSSMAG00000005055	upf1	100	91.756	Scophthalmus_maximus
ENSPLAG00000016232	-	100	91.503	ENSSDUG00000013320	upf1	100	92.397	Seriola_dumerili
ENSPLAG00000016232	-	100	98.185	ENSSDUG00000009629	-	100	98.185	Seriola_dumerili
ENSPLAG00000016232	-	100	92.329	ENSSLDG00000020868	upf1	100	92.870	Seriola_lalandi_dorsalis
ENSPLAG00000016232	-	100	98.185	ENSSLDG00000006878	-	100	98.185	Seriola_lalandi_dorsalis
ENSPLAG00000016232	-	100	92.619	ENSSPUG00000010538	UPF1	100	92.709	Sphenodon_punctatus
ENSPLAG00000016232	-	100	90.628	ENSSPAG00000000003	upf1	100	90.901	Stegastes_partitus
ENSPLAG00000016232	-	100	98.273	ENSSPAG00000011521	-	100	98.273	Stegastes_partitus
ENSPLAG00000016232	-	100	92.390	ENSSSCG00000039301	UPF1	99	94.343	Sus_scrofa
ENSPLAG00000016232	-	83	86.489	ENSTGUG00000001057	UPF1	100	90.533	Taeniopygia_guttata
ENSPLAG00000016232	-	100	96.906	ENSTRUG00000005131	-	100	96.906	Takifugu_rubripes
ENSPLAG00000016232	-	100	92.532	ENSTRUG00000000150	upf1	100	92.532	Takifugu_rubripes
ENSPLAG00000016232	-	100	88.899	ENSTTRG00000011544	UPF1	100	88.899	Tursiops_truncatus
ENSPLAG00000016232	-	100	92.143	ENSUAMG00000007093	UPF1	100	92.232	Ursus_americanus
ENSPLAG00000016232	-	95	94.343	ENSUMAG00000006652	UPF1	99	95.026	Ursus_maritimus
ENSPLAG00000016232	-	100	92.232	ENSVVUG00000007797	UPF1	100	92.321	Vulpes_vulpes
ENSPLAG00000016232	-	100	79.648	ENSXETG00000013602	upf1	100	79.648	Xenopus_tropicalis
ENSPLAG00000016232	-	94	99.805	ENSXCOG00000005764	-	100	99.805	Xiphophorus_couchianus
ENSPLAG00000016232	-	97	91.509	ENSXCOG00000015275	-	96	91.415	Xiphophorus_couchianus
ENSPLAG00000016232	-	100	91.705	ENSXMAG00000001703	-	100	91.613	Xiphophorus_maculatus
ENSPLAG00000016232	-	100	99.727	ENSXMAG00000002540	-	100	99.727	Xiphophorus_maculatus