EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSPLAG00000016267 (Gene tree)
Gene ID: -
Gene Symbol: lsm4
Alias: -
Full Name: LSM4 homolog%2C U6 small nuclear RNA and mRNA degradation associated
Gene Type: protein_coding
Species: Poecilia_latipinna
Status: putative
Strand: Minus strand
Length: 2614 bases
Position: chrKQ545433.1:278362-280975
Accession: 106944923
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPLAP00000027560	LSM	PF01423.22	9.7e-17	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPLAT00000020686	-	1090	XM_015028258	ENSPLAP00000027560	143 (aa)	XP_014883744	-

Gene Model

Click here to download ENSPLAG00000016267's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPLAG00000016267's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSPLAG00000016267	lsm4	72	33.010	ENSPLAG00000023249	snrpd3l	88	33.628
ENSPLAG00000016267	lsm4	69	32.673	ENSPLAG00000017165	si:ch73-14h10.2	100	32.673

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPLAG00000016267	lsm4	93	77.444	ENSG00000130520	LSM4	99	76.389	Homo_sapiens
ENSPLAG00000016267	lsm4	100	88.079	ENSAPOG00000005643	lsm4	100	88.079	Acanthochromis_polyacanthus
ENSPLAG00000016267	lsm4	61	98.851	ENSAMEG00000011162	LSM4	93	79.856	Ailuropoda_melanoleuca
ENSPLAG00000016267	lsm4	100	89.865	ENSAOCG00000006414	lsm4	100	89.865	Amphiprion_ocellaris
ENSPLAG00000016267	lsm4	100	89.262	ENSAPEG00000006238	lsm4	100	89.262	Amphiprion_percula
ENSPLAG00000016267	lsm4	100	88.158	ENSATEG00000016559	lsm4	100	88.158	Anabas_testudineus
ENSPLAG00000016267	lsm4	62	98.864	ENSANAG00000034659	LSM4	99	76.389	Aotus_nancymaae
ENSPLAG00000016267	lsm4	100	89.796	ENSACLG00000022738	lsm4	100	89.796	Astatotilapia_calliptera
ENSPLAG00000016267	lsm4	100	88.194	ENSAMXG00000016932	lsm4	100	90.972	Astyanax_mexicanus
ENSPLAG00000016267	lsm4	62	98.864	ENSBTAG00000008578	LSM4	99	76.389	Bos_taurus
ENSPLAG00000016267	lsm4	58	75.904	WBGene00003078	lsm-4	81	67.619	Caenorhabditis_elegans
ENSPLAG00000016267	lsm4	62	98.864	ENSCJAG00000014171	LSM4	99	76.389	Callithrix_jacchus
ENSPLAG00000016267	lsm4	62	98.864	ENSCAFG00000014900	LSM4	90	80.000	Canis_familiaris
ENSPLAG00000016267	lsm4	62	98.864	ENSCAFG00020012137	LSM4	99	76.389	Canis_lupus_dingo
ENSPLAG00000016267	lsm4	61	98.851	ENSCHIG00000010928	LSM4	90	76.224	Capra_hircus
ENSPLAG00000016267	lsm4	62	97.727	ENSTSYG00000030906	LSM4	99	75.694	Carlito_syrichta
ENSPLAG00000016267	lsm4	62	97.727	ENSCAPG00000014140	LSM4	90	79.545	Cavia_aperea
ENSPLAG00000016267	lsm4	62	97.727	ENSCPOG00000024117	LSM4	90	79.545	Cavia_porcellus
ENSPLAG00000016267	lsm4	62	98.864	ENSCCAG00000036308	LSM4	99	76.389	Cebus_capucinus
ENSPLAG00000016267	lsm4	83	81.356	ENSCATG00000029311	LSM4	99	76.389	Cercocebus_atys
ENSPLAG00000016267	lsm4	62	98.864	ENSCLAG00000010828	LSM4	99	78.723	Chinchilla_lanigera
ENSPLAG00000016267	lsm4	62	98.864	ENSCSAG00000005370	LSM4	99	76.389	Chlorocebus_sabaeus
ENSPLAG00000016267	lsm4	62	100.000	ENSCPBG00000012925	LSM4	96	88.235	Chrysemys_picta_bellii
ENSPLAG00000016267	lsm4	60	93.023	ENSCING00000007519	-	86	82.569	Ciona_intestinalis
ENSPLAG00000016267	lsm4	60	93.023	ENSCSAVG00000008596	-	87	82.569	Ciona_savignyi
ENSPLAG00000016267	lsm4	62	98.864	ENSCANG00000043686	LSM4	99	76.389	Colobus_angolensis_palliatus
ENSPLAG00000016267	lsm4	62	95.455	ENSCGRG00001014436	Lsm4	99	78.571	Cricetulus_griseus_chok1gshd
ENSPLAG00000016267	lsm4	61	95.402	ENSCGRG00000009398	Lsm4	99	78.417	Cricetulus_griseus_crigri
ENSPLAG00000016267	lsm4	100	83.217	ENSCSEG00000016127	lsm4	100	93.007	Cynoglossus_semilaevis
ENSPLAG00000016267	lsm4	100	95.105	ENSCVAG00000010601	lsm4	100	95.105	Cyprinodon_variegatus
ENSPLAG00000016267	lsm4	90	94.531	ENSCVAG00000021828	lsm4	98	94.531	Cyprinodon_variegatus
ENSPLAG00000016267	lsm4	96	85.417	ENSDARG00000023852	lsm4	99	88.194	Danio_rerio
ENSPLAG00000016267	lsm4	62	97.727	ENSDORG00000024225	Lsm4	99	81.295	Dipodomys_ordii
ENSPLAG00000016267	lsm4	75	77.570	FBgn0032240	CG17768	73	74.336	Drosophila_melanogaster
ENSPLAG00000016267	lsm4	51	97.260	ENSETEG00000007762	-	98	77.600	Echinops_telfairi
ENSPLAG00000016267	lsm4	52	93.333	ENSEBUG00000003639	-	72	73.148	Eptatretus_burgeri
ENSPLAG00000016267	lsm4	62	98.864	ENSECAG00000010141	LSM4	56	80.000	Equus_caballus
ENSPLAG00000016267	lsm4	87	94.400	ENSELUG00000012821	lsm4	95	94.400	Esox_lucius
ENSPLAG00000016267	lsm4	62	98.864	ENSFCAG00000040580	LSM4	99	76.389	Felis_catus
ENSPLAG00000016267	lsm4	61	100.000	ENSFALG00000009478	LSM4	96	88.148	Ficedula_albicollis
ENSPLAG00000016267	lsm4	61	98.851	ENSFDAG00000010124	LSM4	99	76.224	Fukomys_damarensis
ENSPLAG00000016267	lsm4	99	80.952	ENSGMOG00000007729	lsm4	99	81.081	Gadus_morhua
ENSPLAG00000016267	lsm4	62	100.000	ENSGALG00000003385	LSM4	96	88.235	Gallus_gallus
ENSPLAG00000016267	lsm4	100	96.503	ENSGAFG00000004903	lsm4	97	94.531	Gambusia_affinis
ENSPLAG00000016267	lsm4	100	84.667	ENSGACG00000008140	lsm4	100	88.667	Gasterosteus_aculeatus
ENSPLAG00000016267	lsm4	62	100.000	ENSGAGG00000017812	LSM4	96	88.235	Gopherus_agassizii
ENSPLAG00000016267	lsm4	83	81.513	ENSGGOG00000012914	-	99	76.389	Gorilla_gorilla
ENSPLAG00000016267	lsm4	100	90.411	ENSHBUG00000008858	lsm4	80	90.411	Haplochromis_burtoni
ENSPLAG00000016267	lsm4	62	98.864	ENSHGLG00000006568	LSM4	99	78.014	Heterocephalus_glaber_female
ENSPLAG00000016267	lsm4	64	98.913	ENSHGLG00100007894	LSM4	99	98.913	Heterocephalus_glaber_male
ENSPLAG00000016267	lsm4	100	95.105	ENSHCOG00000008819	lsm4	100	95.105	Hippocampus_comes
ENSPLAG00000016267	lsm4	100	88.889	ENSIPUG00000005368	Lsm4	100	91.667	Ictalurus_punctatus
ENSPLAG00000016267	lsm4	62	98.864	ENSSTOG00000016494	LSM4	99	76.389	Ictidomys_tridecemlineatus
ENSPLAG00000016267	lsm4	62	96.591	ENSJJAG00000017420	Lsm4	99	75.000	Jaculus_jaculus
ENSPLAG00000016267	lsm4	100	93.056	ENSKMAG00000005073	lsm4	100	93.056	Kryptolebias_marmoratus
ENSPLAG00000016267	lsm4	100	89.262	ENSLBEG00000027930	lsm4	100	89.262	Labrus_bergylta
ENSPLAG00000016267	lsm4	62	100.000	ENSLACG00000015861	LSM4	99	87.324	Latimeria_chalumnae
ENSPLAG00000016267	lsm4	88	91.339	ENSLOCG00000002025	lsm4	100	88.194	Lepisosteus_oculatus
ENSPLAG00000016267	lsm4	61	97.701	ENSLAFG00000017459	LSM4	98	79.856	Loxodonta_africana
ENSPLAG00000016267	lsm4	62	98.864	ENSMFAG00000031194	LSM4	99	76.389	Macaca_fascicularis
ENSPLAG00000016267	lsm4	62	98.864	ENSMMUG00000004405	LSM4	99	76.389	Macaca_mulatta
ENSPLAG00000016267	lsm4	62	98.864	ENSMNEG00000042899	LSM4	99	76.389	Macaca_nemestrina
ENSPLAG00000016267	lsm4	83	81.356	ENSMLEG00000027948	LSM4	99	76.389	Mandrillus_leucophaeus
ENSPLAG00000016267	lsm4	100	92.308	ENSMAMG00000006190	lsm4	100	92.308	Mastacembelus_armatus
ENSPLAG00000016267	lsm4	100	90.411	ENSMZEG00005016420	lsm4	100	90.411	Maylandia_zebra
ENSPLAG00000016267	lsm4	94	78.676	ENSMGAG00000004976	LSM4	96	86.765	Meleagris_gallopavo
ENSPLAG00000016267	lsm4	69	95.960	ENSMICG00000000222	LSM4	99	75.694	Microcebus_murinus
ENSPLAG00000016267	lsm4	62	95.455	ENSMOCG00000020861	Lsm4	99	77.857	Microtus_ochrogaster
ENSPLAG00000016267	lsm4	51	100.000	ENSMODG00000015044	-	98	79.200	Monodelphis_domestica
ENSPLAG00000016267	lsm4	100	91.608	ENSMALG00000018159	lsm4	100	91.608	Monopterus_albus
ENSPLAG00000016267	lsm4	62	95.455	MGP_CAROLIEiJ_G0031158	Lsm4	99	77.857	Mus_caroli
ENSPLAG00000016267	lsm4	62	95.455	ENSMUSG00000031848	Lsm4	100	87.500	Mus_musculus
ENSPLAG00000016267	lsm4	62	95.455	MGP_PahariEiJ_G0021623	Lsm4	99	77.857	Mus_pahari
ENSPLAG00000016267	lsm4	62	95.455	MGP_SPRETEiJ_G0032276	Lsm4	99	77.857	Mus_spretus
ENSPLAG00000016267	lsm4	62	98.864	ENSMPUG00000015589	LSM4	99	76.389	Mustela_putorius_furo
ENSPLAG00000016267	lsm4	61	98.851	ENSMLUG00000004010	LSM4	98	76.224	Myotis_lucifugus
ENSPLAG00000016267	lsm4	62	95.455	ENSNGAG00000008644	Lsm4	99	77.857	Nannospalax_galili
ENSPLAG00000016267	lsm4	69	100.000	ENSNBRG00000022150	lsm4	64	99.038	Neolamprologus_brichardi
ENSPLAG00000016267	lsm4	51	95.890	ENSMEUG00000013229	LSM4	73	90.110	Notamacropus_eugenii
ENSPLAG00000016267	lsm4	54	97.403	ENSOPRG00000005575	LSM4	98	71.212	Ochotona_princeps
ENSPLAG00000016267	lsm4	97	60.714	ENSODEG00000011712	-	98	50.725	Octodon_degus
ENSPLAG00000016267	lsm4	62	98.864	ENSODEG00000020549	-	99	81.295	Octodon_degus
ENSPLAG00000016267	lsm4	62	88.636	ENSODEG00000004519	-	99	74.101	Octodon_degus
ENSPLAG00000016267	lsm4	100	89.796	ENSONIG00000012724	lsm4	100	89.796	Oreochromis_niloticus
ENSPLAG00000016267	lsm4	61	94.505	ENSOANG00000007434	LSM4	94	90.826	Ornithorhynchus_anatinus
ENSPLAG00000016267	lsm4	100	93.056	ENSORLG00000008391	lsm4	100	93.056	Oryzias_latipes
ENSPLAG00000016267	lsm4	100	92.361	ENSORLG00020014829	lsm4	100	92.361	Oryzias_latipes_hni
ENSPLAG00000016267	lsm4	100	91.667	ENSORLG00015010205	lsm4	100	91.667	Oryzias_latipes_hsok
ENSPLAG00000016267	lsm4	100	93.750	ENSOMEG00000003606	lsm4	100	93.750	Oryzias_melastigma
ENSPLAG00000016267	lsm4	69	95.918	ENSOGAG00000027992	LSM4	92	80.000	Otolemur_garnettii
ENSPLAG00000016267	lsm4	61	98.851	ENSOARG00000012553	LSM4	94	81.159	Ovis_aries
ENSPLAG00000016267	lsm4	83	81.513	ENSPPAG00000044045	-	99	76.389	Pan_paniscus
ENSPLAG00000016267	lsm4	62	98.864	ENSPPRG00000018264	LSM4	99	76.389	Panthera_pardus
ENSPLAG00000016267	lsm4	61	98.851	ENSPTIG00000006306	LSM4	99	76.224	Panthera_tigris_altaica
ENSPLAG00000016267	lsm4	83	81.513	ENSPTRG00000031470	LSM4	99	76.389	Pan_troglodytes
ENSPLAG00000016267	lsm4	83	81.356	ENSPANG00000014399	LSM4	99	76.389	Papio_anubis
ENSPLAG00000016267	lsm4	100	88.194	ENSPKIG00000006154	lsm4	100	89.583	Paramormyrops_kingsleyae
ENSPLAG00000016267	lsm4	61	100.000	ENSPSIG00000012358	LSM4	96	87.407	Pelodiscus_sinensis
ENSPLAG00000016267	lsm4	62	95.455	ENSPEMG00000001358	Lsm4	99	77.857	Peromyscus_maniculatus_bairdii
ENSPLAG00000016267	lsm4	100	98.601	ENSPFOG00000000570	lsm4	76	98.601	Poecilia_formosa
ENSPLAG00000016267	lsm4	100	98.601	ENSPMEG00000016378	lsm4	100	98.601	Poecilia_mexicana
ENSPLAG00000016267	lsm4	100	99.301	ENSPREG00000011290	lsm4	76	99.301	Poecilia_reticulata
ENSPLAG00000016267	lsm4	62	98.864	ENSPPYG00000009736	LSM4	99	76.389	Pongo_abelii
ENSPLAG00000016267	lsm4	51	97.260	ENSPCAG00000008513	LSM4	98	77.600	Procavia_capensis
ENSPLAG00000016267	lsm4	69	95.960	ENSPCOG00000019837	LSM4	99	75.694	Propithecus_coquereli
ENSPLAG00000016267	lsm4	62	98.864	ENSPVAG00000015383	LSM4	99	76.389	Pteropus_vampyrus
ENSPLAG00000016267	lsm4	100	90.411	ENSPNYG00000016794	lsm4	100	90.411	Pundamilia_nyererei
ENSPLAG00000016267	lsm4	95	91.176	ENSPNAG00000016598	lsm4	100	91.176	Pygocentrus_nattereri
ENSPLAG00000016267	lsm4	62	95.455	ENSRNOG00000019572	Lsm4	99	77.857	Rattus_norvegicus
ENSPLAG00000016267	lsm4	62	98.864	ENSRBIG00000024717	LSM4	99	76.389	Rhinopithecus_bieti
ENSPLAG00000016267	lsm4	83	81.356	ENSRROG00000045706	LSM4	99	76.389	Rhinopithecus_roxellana
ENSPLAG00000016267	lsm4	58	40.860	YER112W	LSM4	52	40.206	Saccharomyces_cerevisiae
ENSPLAG00000016267	lsm4	52	98.649	ENSSBOG00000022455	LSM4	98	73.846	Saimiri_boliviensis_boliviensis
ENSPLAG00000016267	lsm4	62	100.000	ENSSHAG00000011559	LSM4	99	81.429	Sarcophilus_harrisii
ENSPLAG00000016267	lsm4	100	89.583	ENSSFOG00015021067	lsm4	100	90.972	Scleropages_formosus
ENSPLAG00000016267	lsm4	100	76.000	ENSSMAG00000021020	lsm4	100	84.667	Scophthalmus_maximus
ENSPLAG00000016267	lsm4	100	80.240	ENSSDUG00000009588	lsm4	100	80.240	Seriola_dumerili
ENSPLAG00000016267	lsm4	100	79.762	ENSSLDG00000006827	lsm4	100	79.762	Seriola_lalandi_dorsalis
ENSPLAG00000016267	lsm4	61	100.000	ENSSPUG00000010166	LSM4	68	95.238	Sphenodon_punctatus
ENSPLAG00000016267	lsm4	100	88.079	ENSSPAG00000011615	lsm4	100	88.079	Stegastes_partitus
ENSPLAG00000016267	lsm4	62	98.864	ENSSSCG00000034314	LSM4	99	76.389	Sus_scrofa
ENSPLAG00000016267	lsm4	100	91.608	ENSTRUG00000021737	lsm4	100	91.608	Takifugu_rubripes
ENSPLAG00000016267	lsm4	100	88.889	ENSTNIG00000010191	lsm4	100	92.361	Tetraodon_nigroviridis
ENSPLAG00000016267	lsm4	62	98.864	ENSUAMG00000000665	LSM4	88	94.340	Ursus_americanus
ENSPLAG00000016267	lsm4	62	98.864	ENSUMAG00000009013	LSM4	99	76.389	Ursus_maritimus
ENSPLAG00000016267	lsm4	61	98.851	ENSVVUG00000008136	LSM4	70	76.224	Vulpes_vulpes
ENSPLAG00000016267	lsm4	69	96.939	ENSXETG00000024933	lsm4	99	86.331	Xenopus_tropicalis
ENSPLAG00000016267	lsm4	100	96.503	ENSXMAG00000026672	lsm4	76	96.503	Xiphophorus_maculatus