EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSPLAG00000017268 (Gene tree)
Gene ID: 106949584
Gene Symbol: sf3a1
Alias: -
Full Name: splicing factor 3a subunit 1
Gene Type: protein_coding
Species: Poecilia_latipinna
Status: putative
Strand: Plus strand
Length: 9658 bases
Position: chrKQ545666.1:504978-514635
Accession: 106949584
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPLAP00000028116	PRP21_like_P	PF12230.8	1.1e-52	1	1
ENSPLAP00000028116	Surp	PF01805.20	6.7e-46	1	2
ENSPLAP00000028116	Surp	PF01805.20	6.7e-46	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPLAT00000030043	-	3203	XM_015035936	ENSPLAP00000028116	786 (aa)	XP_014891422	UPI00072EBFF7

Gene Model

Click here to download ENSPLAG00000017268's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPLAG00000017268's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPLAG00000017268	sf3a1	97	85.229	ENSG00000099995	SF3A1	100	83.648	Homo_sapiens
ENSPLAG00000017268	sf3a1	100	95.553	ENSAPOG00000020465	sf3a1	100	95.553	Acanthochromis_polyacanthus
ENSPLAG00000017268	sf3a1	97	85.098	ENSAMEG00000007737	SF3A1	100	83.438	Ailuropoda_melanoleuca
ENSPLAG00000017268	sf3a1	100	95.299	ENSACIG00000020672	sf3a1	100	95.299	Amphilophus_citrinellus
ENSPLAG00000017268	sf3a1	100	95.172	ENSAOCG00000003060	sf3a1	100	95.172	Amphiprion_ocellaris
ENSPLAG00000017268	sf3a1	100	95.299	ENSAPEG00000010735	sf3a1	100	95.299	Amphiprion_percula
ENSPLAG00000017268	sf3a1	97	94.771	ENSATEG00000021201	sf3a1	96	94.771	Anabas_testudineus
ENSPLAG00000017268	sf3a1	96	84.190	ENSAPLG00000009057	SF3A1	100	83.673	Anas_platyrhynchos
ENSPLAG00000017268	sf3a1	100	80.864	ENSACAG00000009415	SF3A1	100	80.864	Anolis_carolinensis
ENSPLAG00000017268	sf3a1	99	83.653	ENSANAG00000032045	SF3A1	100	83.648	Aotus_nancymaae
ENSPLAG00000017268	sf3a1	100	93.266	ENSACLG00000012622	sf3a1	100	94.155	Astatotilapia_calliptera
ENSPLAG00000017268	sf3a1	99	87.786	ENSAMXG00000005382	sf3a1	99	87.913	Astyanax_mexicanus
ENSPLAG00000017268	sf3a1	97	85.098	ENSBTAG00000003390	SF3A1	100	83.543	Bos_taurus
ENSPLAG00000017268	sf3a1	81	44.717	WBGene00004188	prp-21	90	44.151	Caenorhabditis_elegans
ENSPLAG00000017268	sf3a1	97	84.967	ENSCJAG00000010370	SF3A1	100	83.396	Callithrix_jacchus
ENSPLAG00000017268	sf3a1	97	85.098	ENSCAFG00000012559	SF3A1	100	83.543	Canis_familiaris
ENSPLAG00000017268	sf3a1	97	85.098	ENSCAFG00020000838	SF3A1	100	83.543	Canis_lupus_dingo
ENSPLAG00000017268	sf3a1	97	85.229	ENSCHIG00000018642	SF3A1	100	83.668	Capra_hircus
ENSPLAG00000017268	sf3a1	97	85.229	ENSTSYG00000004739	SF3A1	100	83.668	Carlito_syrichta
ENSPLAG00000017268	sf3a1	94	68.188	ENSCAPG00000015414	SF3A1	97	68.725	Cavia_aperea
ENSPLAG00000017268	sf3a1	99	83.590	ENSCPOG00000014589	SF3A1	100	83.417	Cavia_porcellus
ENSPLAG00000017268	sf3a1	99	83.653	ENSCCAG00000032006	SF3A1	100	83.648	Cebus_capucinus
ENSPLAG00000017268	sf3a1	97	85.229	ENSCATG00000029241	SF3A1	100	83.668	Cercocebus_atys
ENSPLAG00000017268	sf3a1	97	84.496	ENSCLAG00000006508	SF3A1	100	83.899	Chinchilla_lanigera
ENSPLAG00000017268	sf3a1	97	85.229	ENSCSAG00000009470	SF3A1	100	83.648	Chlorocebus_sabaeus
ENSPLAG00000017268	sf3a1	58	90.458	ENSCHOG00000005201	SF3A1	65	90.458	Choloepus_hoffmanni
ENSPLAG00000017268	sf3a1	100	81.463	ENSCPBG00000007595	SF3A1	100	82.472	Chrysemys_picta_bellii
ENSPLAG00000017268	sf3a1	97	52.874	ENSCING00000008526	-	98	52.113	Ciona_intestinalis
ENSPLAG00000017268	sf3a1	93	64.035	ENSCSAVG00000005608	-	100	50.897	Ciona_savignyi
ENSPLAG00000017268	sf3a1	97	85.229	ENSCANG00000033564	SF3A1	100	83.648	Colobus_angolensis_palliatus
ENSPLAG00000017268	sf3a1	97	84.868	ENSCGRG00001008933	Sf3a1	100	83.396	Cricetulus_griseus_chok1gshd
ENSPLAG00000017268	sf3a1	97	84.868	ENSCGRG00000006127	Sf3a1	100	83.396	Cricetulus_griseus_crigri
ENSPLAG00000017268	sf3a1	100	90.355	ENSCSEG00000010792	sf3a1	100	90.355	Cynoglossus_semilaevis
ENSPLAG00000017268	sf3a1	100	95.802	ENSCVAG00000004560	sf3a1	100	95.802	Cyprinodon_variegatus
ENSPLAG00000017268	sf3a1	100	86.185	ENSDARG00000041887	sf3a1	100	89.831	Danio_rerio
ENSPLAG00000017268	sf3a1	97	85.379	ENSDNOG00000010629	SF3A1	100	83.312	Dasypus_novemcinctus
ENSPLAG00000017268	sf3a1	97	85.098	ENSDORG00000005613	Sf3a1	100	83.543	Dipodomys_ordii
ENSPLAG00000017268	sf3a1	84	60.640	FBgn0266917	Sf3a1	84	58.303	Drosophila_melanogaster
ENSPLAG00000017268	sf3a1	85	83.259	ENSETEG00000017194	SF3A1	95	84.454	Echinops_telfairi
ENSPLAG00000017268	sf3a1	97	67.497	ENSEBUG00000001285	sf3a1	95	69.009	Eptatretus_burgeri
ENSPLAG00000017268	sf3a1	99	83.780	ENSEASG00005010254	SF3A1	100	83.774	Equus_asinus_asinus
ENSPLAG00000017268	sf3a1	99	83.780	ENSECAG00000023962	SF3A1	100	83.774	Equus_caballus
ENSPLAG00000017268	sf3a1	74	91.803	ENSEEUG00000003159	SF3A1	83	91.803	Erinaceus_europaeus
ENSPLAG00000017268	sf3a1	100	86.835	ENSELUG00000022578	sf3a1	100	87.706	Esox_lucius
ENSPLAG00000017268	sf3a1	97	84.837	ENSFCAG00000011932	SF3A1	100	83.291	Felis_catus
ENSPLAG00000017268	sf3a1	96	82.695	ENSFALG00000006944	SF3A1	100	82.620	Ficedula_albicollis
ENSPLAG00000017268	sf3a1	97	84.967	ENSFDAG00000009560	SF3A1	100	83.417	Fukomys_damarensis
ENSPLAG00000017268	sf3a1	100	96.819	ENSFHEG00000010866	sf3a1	100	96.819	Fundulus_heteroclitus
ENSPLAG00000017268	sf3a1	100	86.929	ENSGMOG00000016024	sf3a1	100	85.660	Gadus_morhua
ENSPLAG00000017268	sf3a1	96	84.301	ENSGALG00000007937	SF3A1	100	82.936	Gallus_gallus
ENSPLAG00000017268	sf3a1	100	98.473	ENSGAFG00000009111	sf3a1	100	98.473	Gambusia_affinis
ENSPLAG00000017268	sf3a1	100	88.889	ENSGACG00000011893	sf3a1	100	88.510	Gasterosteus_aculeatus
ENSPLAG00000017268	sf3a1	96	81.184	ENSGAGG00000000762	SF3A1	99	81.974	Gopherus_agassizii
ENSPLAG00000017268	sf3a1	97	85.229	ENSGGOG00000012631	SF3A1	100	83.648	Gorilla_gorilla
ENSPLAG00000017268	sf3a1	100	94.663	ENSHBUG00000015795	sf3a1	100	94.282	Haplochromis_burtoni
ENSPLAG00000017268	sf3a1	99	83.590	ENSHGLG00000007907	SF3A1	100	83.417	Heterocephalus_glaber_female
ENSPLAG00000017268	sf3a1	99	83.590	ENSHGLG00100013799	SF3A1	100	83.417	Heterocephalus_glaber_male
ENSPLAG00000017268	sf3a1	100	88.959	ENSHCOG00000015423	sf3a1	100	88.706	Hippocampus_comes
ENSPLAG00000017268	sf3a1	98	85.419	ENSIPUG00000002470	sf3a1	99	85.806	Ictalurus_punctatus
ENSPLAG00000017268	sf3a1	97	84.967	ENSSTOG00000013892	SF3A1	100	83.522	Ictidomys_tridecemlineatus
ENSPLAG00000017268	sf3a1	97	84.967	ENSJJAG00000022566	Sf3a1	100	83.417	Jaculus_jaculus
ENSPLAG00000017268	sf3a1	100	93.901	ENSKMAG00000002400	sf3a1	100	93.901	Kryptolebias_marmoratus
ENSPLAG00000017268	sf3a1	100	91.995	ENSLBEG00000022974	sf3a1	100	91.614	Labrus_bergylta
ENSPLAG00000017268	sf3a1	100	83.544	ENSLACG00000003565	SF3A1	100	84.177	Latimeria_chalumnae
ENSPLAG00000017268	sf3a1	100	86.979	ENSLOCG00000008251	sf3a1	99	87.358	Lepisosteus_oculatus
ENSPLAG00000017268	sf3a1	97	85.359	ENSLAFG00000000448	SF3A1	100	83.794	Loxodonta_africana
ENSPLAG00000017268	sf3a1	99	54.969	ENSLAFG00000026032	-	99	53.692	Loxodonta_africana
ENSPLAG00000017268	sf3a1	97	85.098	ENSMFAG00000031979	SF3A1	100	83.522	Macaca_fascicularis
ENSPLAG00000017268	sf3a1	97	85.098	ENSMMUG00000005547	SF3A1	100	83.522	Macaca_mulatta
ENSPLAG00000017268	sf3a1	97	85.229	ENSMNEG00000037229	SF3A1	100	83.648	Macaca_nemestrina
ENSPLAG00000017268	sf3a1	97	85.229	ENSMLEG00000041908	SF3A1	100	83.648	Mandrillus_leucophaeus
ENSPLAG00000017268	sf3a1	98	94.171	ENSMAMG00000006460	sf3a1	97	94.171	Mastacembelus_armatus
ENSPLAG00000017268	sf3a1	100	93.266	ENSMZEG00005009633	sf3a1	100	94.155	Maylandia_zebra
ENSPLAG00000017268	sf3a1	96	84.301	ENSMGAG00000001330	SF3A1	99	84.565	Meleagris_gallopavo
ENSPLAG00000017268	sf3a1	93	80.790	ENSMAUG00000020317	Sf3a1	100	77.904	Mesocricetus_auratus
ENSPLAG00000017268	sf3a1	97	85.229	ENSMICG00000010038	SF3A1	100	83.668	Microcebus_murinus
ENSPLAG00000017268	sf3a1	97	84.706	ENSMOCG00000008438	Sf3a1	100	83.417	Microtus_ochrogaster
ENSPLAG00000017268	sf3a1	100	88.945	ENSMMOG00000015588	sf3a1	99	89.708	Mola_mola
ENSPLAG00000017268	sf3a1	97	83.399	ENSMODG00000009270	SF3A1	100	82.872	Monodelphis_domestica
ENSPLAG00000017268	sf3a1	100	93.274	ENSMALG00000000148	sf3a1	100	93.655	Monopterus_albus
ENSPLAG00000017268	sf3a1	97	84.868	MGP_CAROLIEiJ_G0016029	Sf3a1	99	82.323	Mus_caroli
ENSPLAG00000017268	sf3a1	97	84.868	ENSMUSG00000002129	Sf3a1	99	82.323	Mus_musculus
ENSPLAG00000017268	sf3a1	97	84.737	MGP_PahariEiJ_G0016862	Sf3a1	99	82.323	Mus_pahari
ENSPLAG00000017268	sf3a1	97	84.868	MGP_SPRETEiJ_G0016870	Sf3a1	99	82.323	Mus_spretus
ENSPLAG00000017268	sf3a1	97	84.314	ENSMPUG00000013144	SF3A1	100	83.668	Mustela_putorius_furo
ENSPLAG00000017268	sf3a1	97	84.967	ENSMLUG00000002139	SF3A1	100	83.396	Myotis_lucifugus
ENSPLAG00000017268	sf3a1	99	83.780	ENSNGAG00000016977	Sf3a1	100	83.774	Nannospalax_galili
ENSPLAG00000017268	sf3a1	100	94.036	ENSNBRG00000016642	sf3a1	100	93.655	Neolamprologus_brichardi
ENSPLAG00000017268	sf3a1	97	85.229	ENSNLEG00000003686	SF3A1	100	83.648	Nomascus_leucogenys
ENSPLAG00000017268	sf3a1	94	74.661	ENSMEUG00000008741	SF3A1	100	74.639	Notamacropus_eugenii
ENSPLAG00000017268	sf3a1	97	85.621	ENSOPRG00000016636	SF3A1	100	84.171	Ochotona_princeps
ENSPLAG00000017268	sf3a1	97	84.967	ENSODEG00000002571	SF3A1	100	83.501	Octodon_degus
ENSPLAG00000017268	sf3a1	100	94.917	ENSONIG00000010848	sf3a1	100	94.536	Oreochromis_niloticus
ENSPLAG00000017268	sf3a1	97	85.098	ENSOCUG00000007633	SF3A1	100	83.648	Oryctolagus_cuniculus
ENSPLAG00000017268	sf3a1	96	93.899	ENSORLG00000013050	sf3a1	99	93.501	Oryzias_latipes
ENSPLAG00000017268	sf3a1	99	91.176	ENSORLG00020003236	sf3a1	97	91.366	Oryzias_latipes_hni
ENSPLAG00000017268	sf3a1	100	93.520	ENSORLG00015017411	sf3a1	100	93.139	Oryzias_latipes_hsok
ENSPLAG00000017268	sf3a1	100	94.028	ENSOMEG00000013362	sf3a1	100	93.647	Oryzias_melastigma
ENSPLAG00000017268	sf3a1	97	85.229	ENSOGAG00000012931	SF3A1	100	83.668	Otolemur_garnettii
ENSPLAG00000017268	sf3a1	97	83.791	ENSOARG00000006849	SF3A1	100	82.286	Ovis_aries
ENSPLAG00000017268	sf3a1	97	84.444	ENSPPAG00000041790	SF3A1	100	82.767	Pan_paniscus
ENSPLAG00000017268	sf3a1	97	84.837	ENSPPRG00000004391	SF3A1	100	83.291	Panthera_pardus
ENSPLAG00000017268	sf3a1	97	84.706	ENSPTIG00000000844	SF3A1	99	85.229	Panthera_tigris_altaica
ENSPLAG00000017268	sf3a1	97	85.229	ENSPTRG00000014240	SF3A1	100	83.648	Pan_troglodytes
ENSPLAG00000017268	sf3a1	97	85.229	ENSPANG00000020772	SF3A1	100	83.648	Papio_anubis
ENSPLAG00000017268	sf3a1	82	91.209	ENSPSIG00000012803	SF3A1	99	91.209	Pelodiscus_sinensis
ENSPLAG00000017268	sf3a1	97	89.935	ENSPMGG00000023096	sf3a1	100	90.980	Periophthalmus_magnuspinnatus
ENSPLAG00000017268	sf3a1	97	85.000	ENSPEMG00000009494	Sf3a1	100	83.522	Peromyscus_maniculatus_bairdii
ENSPLAG00000017268	sf3a1	69	77.737	ENSPMAG00000007139	-	93	78.102	Petromyzon_marinus
ENSPLAG00000017268	sf3a1	97	84.052	ENSPCIG00000022692	SF3A1	100	82.872	Phascolarctos_cinereus
ENSPLAG00000017268	sf3a1	100	88.832	ENSPFOG00000016768	sf3a1	100	88.832	Poecilia_formosa
ENSPLAG00000017268	sf3a1	96	99.096	ENSPMEG00000019811	sf3a1	100	99.096	Poecilia_mexicana
ENSPLAG00000017268	sf3a1	100	99.109	ENSPREG00000010347	sf3a1	100	99.109	Poecilia_reticulata
ENSPLAG00000017268	sf3a1	97	85.229	ENSPPYG00000011707	SF3A1	100	83.648	Pongo_abelii
ENSPLAG00000017268	sf3a1	57	83.884	ENSPCAG00000003266	SF3A1	57	83.884	Procavia_capensis
ENSPLAG00000017268	sf3a1	97	84.967	ENSPCOG00000026630	SF3A1	100	83.417	Propithecus_coquereli
ENSPLAG00000017268	sf3a1	95	84.471	ENSPVAG00000017719	SF3A1	94	85.007	Pteropus_vampyrus
ENSPLAG00000017268	sf3a1	100	94.536	ENSPNYG00000018706	sf3a1	100	94.155	Pundamilia_nyererei
ENSPLAG00000017268	sf3a1	99	87.913	ENSPNAG00000003721	sf3a1	99	87.532	Pygocentrus_nattereri
ENSPLAG00000017268	sf3a1	99	83.505	ENSRNOG00000005218	Sf3a1	99	82.084	Rattus_norvegicus
ENSPLAG00000017268	sf3a1	97	85.098	ENSRBIG00000032167	SF3A1	100	83.522	Rhinopithecus_bieti
ENSPLAG00000017268	sf3a1	97	85.098	ENSRROG00000044908	SF3A1	100	83.522	Rhinopithecus_roxellana
ENSPLAG00000017268	sf3a1	93	85.034	ENSSBOG00000021960	SF3A1	98	85.479	Saimiri_boliviensis_boliviensis
ENSPLAG00000017268	sf3a1	97	80.784	ENSSHAG00000003666	SF3A1	97	82.353	Sarcophilus_harrisii
ENSPLAG00000017268	sf3a1	100	89.886	ENSSFOG00015004579	sf3a1	100	90.771	Scleropages_formosus
ENSPLAG00000017268	sf3a1	100	90.089	ENSSMAG00000004275	sf3a1	100	89.835	Scophthalmus_maximus
ENSPLAG00000017268	sf3a1	100	93.774	ENSSDUG00000022219	sf3a1	100	93.520	Seriola_dumerili
ENSPLAG00000017268	sf3a1	100	93.774	ENSSLDG00000012642	sf3a1	100	93.520	Seriola_lalandi_dorsalis
ENSPLAG00000017268	sf3a1	97	81.961	ENSSARG00000005960	SF3A1	99	82.484	Sorex_araneus
ENSPLAG00000017268	sf3a1	96	83.117	ENSSPUG00000018863	SF3A1	100	82.960	Sphenodon_punctatus
ENSPLAG00000017268	sf3a1	100	94.663	ENSSPAG00000011856	sf3a1	100	94.282	Stegastes_partitus
ENSPLAG00000017268	sf3a1	97	84.314	ENSSSCG00000010002	SF3A1	100	83.543	Sus_scrofa
ENSPLAG00000017268	sf3a1	96	84.079	ENSTGUG00000010547	SF3A1	99	84.675	Taeniopygia_guttata
ENSPLAG00000017268	sf3a1	100	88.945	ENSTRUG00000006118	sf3a1	100	88.945	Takifugu_rubripes
ENSPLAG00000017268	sf3a1	64	87.361	ENSTNIG00000005713	sf3a1	89	89.381	Tetraodon_nigroviridis
ENSPLAG00000017268	sf3a1	97	78.562	ENSTBEG00000012771	SF3A1	100	77.233	Tupaia_belangeri
ENSPLAG00000017268	sf3a1	97	84.856	ENSTTRG00000001535	SF3A1	100	83.438	Tursiops_truncatus
ENSPLAG00000017268	sf3a1	99	82.025	ENSUAMG00000006750	SF3A1	99	82.532	Ursus_americanus
ENSPLAG00000017268	sf3a1	99	84.041	ENSUMAG00000016665	SF3A1	99	84.556	Ursus_maritimus
ENSPLAG00000017268	sf3a1	97	85.098	ENSVVUG00000003075	SF3A1	100	83.543	Vulpes_vulpes
ENSPLAG00000017268	sf3a1	100	77.945	ENSXETG00000016144	sf3a1	96	85.081	Xenopus_tropicalis
ENSPLAG00000017268	sf3a1	100	98.092	ENSXCOG00000015653	sf3a1	100	98.092	Xiphophorus_couchianus
ENSPLAG00000017268	sf3a1	100	98.346	ENSXMAG00000002753	sf3a1	100	98.346	Xiphophorus_maculatus