EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSPLAG00000017660 (Gene tree)
Gene ID: 106936958
Gene Symbol: smg6
Alias: -
Full Name: SMG6%2C nonsense mediated mRNA decay factor
Gene Type: protein_coding
Species: Poecilia_latipinna
Status: putative
Strand: Minus strand
Length: 12845 bases
Position: chrKQ547554.1:43968-56812
Accession: 106936958
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPLAP00000028348	EST1	PF10374.9	4.3e-12	1	1
ENSPLAP00000028348	EST1_DNA_bind	PF10373.9	4.7e-57	1	1
ENSPLAP00000028348	PIN_4	PF13638.6	5.3e-22	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPLAT00000030172	-	6091	XM_015018220	ENSPLAP00000028348	1608 (aa)	XP_014873706	UPI00072E1C61

Gene Model

Click here to download ENSPLAG00000017660's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPLAG00000017660's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPLAG00000017660	smg6	74	53.768	ENSG00000070366	SMG6	100	57.299	Homo_sapiens
ENSPLAG00000017660	smg6	100	72.678	ENSAPOG00000019448	smg6	100	73.418	Acanthochromis_polyacanthus
ENSPLAG00000017660	smg6	74	54.186	ENSAMEG00000007632	SMG6	77	56.213	Ailuropoda_melanoleuca
ENSPLAG00000017660	smg6	93	70.798	ENSACIG00000012997	smg6	100	71.012	Amphilophus_citrinellus
ENSPLAG00000017660	smg6	100	73.614	ENSAOCG00000002630	smg6	100	74.399	Amphiprion_ocellaris
ENSPLAG00000017660	smg6	100	73.402	ENSAPEG00000019101	smg6	100	74.188	Amphiprion_percula
ENSPLAG00000017660	smg6	100	70.536	ENSATEG00000006483	smg6	100	70.918	Anabas_testudineus
ENSPLAG00000017660	smg6	62	49.571	ENSACAG00000011783	SMG6	72	53.378	Anolis_carolinensis
ENSPLAG00000017660	smg6	74	54.160	ENSANAG00000035760	SMG6	76	56.775	Aotus_nancymaae
ENSPLAG00000017660	smg6	100	70.078	ENSACLG00000005288	smg6	100	71.456	Astatotilapia_calliptera
ENSPLAG00000017660	smg6	75	66.791	ENSAMXG00000017326	smg6	93	66.604	Astyanax_mexicanus
ENSPLAG00000017660	smg6	74	54.317	ENSBTAG00000000267	SMG6	77	56.641	Bos_taurus
ENSPLAG00000017660	smg6	74	54.183	ENSCJAG00000001820	SMG6	77	56.641	Callithrix_jacchus
ENSPLAG00000017660	smg6	74	54.445	ENSCAFG00000019260	SMG6	83	54.517	Canis_familiaris
ENSPLAG00000017660	smg6	74	54.445	ENSCAFG00020009770	SMG6	83	54.517	Canis_lupus_dingo
ENSPLAG00000017660	smg6	74	54.431	ENSCHIG00000021998	SMG6	83	53.432	Capra_hircus
ENSPLAG00000017660	smg6	74	53.611	ENSTSYG00000003406	SMG6	100	56.752	Carlito_syrichta
ENSPLAG00000017660	smg6	67	52.242	ENSCAPG00000016197	SMG6	68	53.592	Cavia_aperea
ENSPLAG00000017660	smg6	74	53.145	ENSCPOG00000014878	SMG6	89	58.559	Cavia_porcellus
ENSPLAG00000017660	smg6	74	54.003	ENSCCAG00000035801	SMG6	77	56.555	Cebus_capucinus
ENSPLAG00000017660	smg6	74	54.245	ENSCATG00000031956	SMG6	77	56.775	Cercocebus_atys
ENSPLAG00000017660	smg6	74	53.061	ENSCLAG00000006748	SMG6	82	59.135	Chinchilla_lanigera
ENSPLAG00000017660	smg6	74	54.481	ENSCSAG00000013800	SMG6	77	57.033	Chlorocebus_sabaeus
ENSPLAG00000017660	smg6	76	53.544	ENSCPBG00000020369	SMG6	84	53.591	Chrysemys_picta_bellii
ENSPLAG00000017660	smg6	91	48.060	ENSCANG00000031764	SMG6	100	57.664	Colobus_angolensis_palliatus
ENSPLAG00000017660	smg6	74	49.364	ENSCGRG00000007782	Smg6	77	51.718	Cricetulus_griseus_crigri
ENSPLAG00000017660	smg6	100	65.343	ENSCSEG00000012757	smg6	100	65.285	Cynoglossus_semilaevis
ENSPLAG00000017660	smg6	100	82.945	ENSCVAG00000012789	smg6	100	83.252	Cyprinodon_variegatus
ENSPLAG00000017660	smg6	100	56.838	ENSDARG00000100481	smg6	100	56.056	Danio_rerio
ENSPLAG00000017660	smg6	74	53.333	ENSDNOG00000048283	SMG6	76	56.003	Dasypus_novemcinctus
ENSPLAG00000017660	smg6	74	50.667	ENSDORG00000016614	Smg6	83	59.615	Dipodomys_ordii
ENSPLAG00000017660	smg6	83	87.500	ENSETEG00000016790	SMG6	64	87.500	Echinops_telfairi
ENSPLAG00000017660	smg6	59	47.700	ENSEBUG00000005059	smg6	61	47.485	Eptatretus_burgeri
ENSPLAG00000017660	smg6	74	53.888	ENSEASG00005009318	SMG6	76	56.395	Equus_asinus_asinus
ENSPLAG00000017660	smg6	74	53.888	ENSECAG00000006519	SMG6	76	56.395	Equus_caballus
ENSPLAG00000017660	smg6	74	46.336	ENSEEUG00000003493	SMG6	84	46.293	Erinaceus_europaeus
ENSPLAG00000017660	smg6	78	71.244	ENSELUG00000005934	smg6	87	64.654	Esox_lucius
ENSPLAG00000017660	smg6	74	53.876	ENSFCAG00000028817	SMG6	77	56.443	Felis_catus
ENSPLAG00000017660	smg6	83	51.309	ENSFALG00000006538	SMG6	88	53.232	Ficedula_albicollis
ENSPLAG00000017660	smg6	74	53.333	ENSFDAG00000015106	SMG6	82	58.654	Fukomys_damarensis
ENSPLAG00000017660	smg6	100	85.363	ENSFHEG00000013282	smg6	100	86.285	Fundulus_heteroclitus
ENSPLAG00000017660	smg6	77	52.731	ENSGALG00000003108	SMG6	84	52.856	Gallus_gallus
ENSPLAG00000017660	smg6	100	94.324	ENSGAFG00000000379	smg6	100	94.324	Gambusia_affinis
ENSPLAG00000017660	smg6	90	72.285	ENSGACG00000020521	smg6	99	72.311	Gasterosteus_aculeatus
ENSPLAG00000017660	smg6	74	53.551	ENSGAGG00000025617	SMG6	84	53.711	Gopherus_agassizii
ENSPLAG00000017660	smg6	74	54.003	ENSGGOG00000017156	SMG6	77	56.470	Gorilla_gorilla
ENSPLAG00000017660	smg6	100	70.174	ENSHBUG00000021311	smg6	100	70.906	Haplochromis_burtoni
ENSPLAG00000017660	smg6	74	53.527	ENSHGLG00000012882	SMG6	82	60.577	Heterocephalus_glaber_female
ENSPLAG00000017660	smg6	74	53.527	ENSHGLG00100017815	SMG6	82	60.577	Heterocephalus_glaber_male
ENSPLAG00000017660	smg6	66	68.860	ENSHCOG00000008761	smg6	83	68.056	Hippocampus_comes
ENSPLAG00000017660	smg6	100	54.017	ENSIPUG00000012493	smg6	100	53.433	Ictalurus_punctatus
ENSPLAG00000017660	smg6	74	53.543	ENSSTOG00000028127	SMG6	83	58.654	Ictidomys_tridecemlineatus
ENSPLAG00000017660	smg6	55	50.211	ENSJJAG00000015367	Smg6	76	48.943	Jaculus_jaculus
ENSPLAG00000017660	smg6	100	75.000	ENSKMAG00000000279	smg6	100	75.196	Kryptolebias_marmoratus
ENSPLAG00000017660	smg6	100	69.534	ENSLBEG00000002184	smg6	100	69.869	Labrus_bergylta
ENSPLAG00000017660	smg6	67	64.343	ENSLOCG00000006448	smg6	100	55.056	Lepisosteus_oculatus
ENSPLAG00000017660	smg6	74	52.969	ENSLAFG00000001261	SMG6	77	56.014	Loxodonta_africana
ENSPLAG00000017660	smg6	74	54.481	ENSMFAG00000003394	SMG6	77	57.033	Macaca_fascicularis
ENSPLAG00000017660	smg6	74	54.403	ENSMMUG00000023161	SMG6	77	56.947	Macaca_mulatta
ENSPLAG00000017660	smg6	74	51.648	ENSMNEG00000044592	SMG6	76	53.938	Macaca_nemestrina
ENSPLAG00000017660	smg6	87	58.772	ENSMLEG00000029353	SMG6	77	58.772	Mandrillus_leucophaeus
ENSPLAG00000017660	smg6	100	69.892	ENSMAMG00000020119	smg6	100	71.512	Mastacembelus_armatus
ENSPLAG00000017660	smg6	100	69.856	ENSMZEG00005024736	smg6	100	70.532	Maylandia_zebra
ENSPLAG00000017660	smg6	53	49.617	ENSMGAG00000005401	-	81	49.725	Meleagris_gallopavo
ENSPLAG00000017660	smg6	74	53.895	ENSMICG00000012913	SMG6	77	56.518	Microcebus_murinus
ENSPLAG00000017660	smg6	100	63.937	ENSMMOG00000010883	smg6	100	64.281	Mola_mola
ENSPLAG00000017660	smg6	74	54.739	ENSMODG00000010622	SMG6	72	59.000	Monodelphis_domestica
ENSPLAG00000017660	smg6	100	68.675	ENSMALG00000001106	smg6	100	69.052	Monopterus_albus
ENSPLAG00000017660	smg6	74	53.428	MGP_CAROLIEiJ_G0016729	Smg6	87	69.206	Mus_caroli
ENSPLAG00000017660	smg6	74	53.381	ENSMUSG00000038290	Smg6	87	68.889	Mus_musculus
ENSPLAG00000017660	smg6	74	52.776	MGP_PahariEiJ_G0017866	Smg6	87	68.571	Mus_pahari
ENSPLAG00000017660	smg6	74	53.302	MGP_SPRETEiJ_G0017572	Smg6	87	68.571	Mus_spretus
ENSPLAG00000017660	smg6	74	54.389	ENSMPUG00000013046	SMG6	77	56.555	Mustela_putorius_furo
ENSPLAG00000017660	smg6	74	54.107	ENSMLUG00000005739	SMG6	83	54.553	Myotis_lucifugus
ENSPLAG00000017660	smg6	74	53.512	ENSNGAG00000007287	Smg6	89	55.507	Nannospalax_galili
ENSPLAG00000017660	smg6	97	68.210	ENSNBRG00000009511	smg6	99	70.324	Neolamprologus_brichardi
ENSPLAG00000017660	smg6	74	54.216	ENSNLEG00000017171	SMG6	100	57.299	Nomascus_leucogenys
ENSPLAG00000017660	smg6	74	54.160	ENSMEUG00000015804	SMG6	78	55.952	Notamacropus_eugenii
ENSPLAG00000017660	smg6	52	62.304	ENSOPRG00000000579	SMG6	79	62.500	Ochotona_princeps
ENSPLAG00000017660	smg6	86	46.835	ENSODEG00000008038	SMG6	82	50.595	Octodon_degus
ENSPLAG00000017660	smg6	100	70.197	ENSONIG00000005594	smg6	99	76.250	Oreochromis_niloticus
ENSPLAG00000017660	smg6	74	53.907	ENSOCUG00000013018	SMG6	83	53.678	Oryctolagus_cuniculus
ENSPLAG00000017660	smg6	100	66.989	ENSORLG00000003317	smg6	100	67.775	Oryzias_latipes
ENSPLAG00000017660	smg6	100	66.948	ENSORLG00020015343	smg6	100	67.494	Oryzias_latipes_hni
ENSPLAG00000017660	smg6	100	67.089	ENSORLG00015020454	smg6	100	68.077	Oryzias_latipes_hsok
ENSPLAG00000017660	smg6	100	67.773	ENSOMEG00000010838	smg6	100	68.584	Oryzias_melastigma
ENSPLAG00000017660	smg6	74	54.003	ENSOGAG00000004483	SMG6	77	56.470	Otolemur_garnettii
ENSPLAG00000017660	smg6	74	54.517	ENSOARG00000015076	SMG6	85	53.864	Ovis_aries
ENSPLAG00000017660	smg6	74	54.039	ENSPPAG00000043296	SMG6	77	56.384	Pan_paniscus
ENSPLAG00000017660	smg6	74	53.876	ENSPPRG00000014581	SMG6	77	56.443	Panthera_pardus
ENSPLAG00000017660	smg6	74	53.876	ENSPTIG00000008925	SMG6	100	57.482	Panthera_tigris_altaica
ENSPLAG00000017660	smg6	74	53.961	ENSPTRG00000008544	SMG6	100	57.299	Pan_troglodytes
ENSPLAG00000017660	smg6	74	54.403	ENSPANG00000024588	SMG6	77	56.947	Papio_anubis
ENSPLAG00000017660	smg6	68	51.997	ENSPSIG00000006660	SMG6	82	51.736	Pelodiscus_sinensis
ENSPLAG00000017660	smg6	94	77.989	ENSPMGG00000000844	smg6	99	77.717	Periophthalmus_magnuspinnatus
ENSPLAG00000017660	smg6	74	54.041	ENSPEMG00000020707	Smg6	84	58.654	Peromyscus_maniculatus_bairdii
ENSPLAG00000017660	smg6	100	99.067	ENSPFOG00000012035	smg6	100	99.067	Poecilia_formosa
ENSPLAG00000017660	smg6	100	99.440	ENSPMEG00000000258	smg6	100	99.440	Poecilia_mexicana
ENSPLAG00000017660	smg6	100	96.582	ENSPREG00000010066	smg6	100	96.582	Poecilia_reticulata
ENSPLAG00000017660	smg6	74	50.078	ENSPPYG00000007790	SMG6	77	52.292	Pongo_abelii
ENSPLAG00000017660	smg6	71	58.730	ENSPCAG00000000552	SMG6	83	51.181	Procavia_capensis
ENSPLAG00000017660	smg6	74	53.670	ENSPCOG00000020925	SMG6	77	56.213	Propithecus_coquereli
ENSPLAG00000017660	smg6	71	61.588	ENSPVAG00000002159	SMG6	73	61.588	Pteropus_vampyrus
ENSPLAG00000017660	smg6	93	67.075	ENSPNYG00000024151	smg6	99	70.126	Pundamilia_nyererei
ENSPLAG00000017660	smg6	74	61.994	ENSPNAG00000015480	smg6	100	52.070	Pygocentrus_nattereri
ENSPLAG00000017660	smg6	74	53.465	ENSRNOG00000003041	Smg6	87	69.524	Rattus_norvegicus
ENSPLAG00000017660	smg6	74	54.203	ENSRBIG00000024746	SMG6	77	56.727	Rhinopithecus_bieti
ENSPLAG00000017660	smg6	74	54.203	ENSRROG00000030423	SMG6	100	57.664	Rhinopithecus_roxellana
ENSPLAG00000017660	smg6	74	54.301	ENSSBOG00000022518	SMG6	76	54.841	Saimiri_boliviensis_boliviensis
ENSPLAG00000017660	smg6	74	54.581	ENSSHAG00000010045	SMG6	76	56.525	Sarcophilus_harrisii
ENSPLAG00000017660	smg6	94	67.677	ENSSFOG00015005436	smg6	100	51.091	Scleropages_formosus
ENSPLAG00000017660	smg6	100	69.964	ENSSMAG00000019777	smg6	100	69.964	Scophthalmus_maximus
ENSPLAG00000017660	smg6	100	73.329	ENSSDUG00000016412	smg6	100	73.926	Seriola_dumerili
ENSPLAG00000017660	smg6	90	73.753	ENSSLDG00000020747	smg6	98	74.147	Seriola_lalandi_dorsalis
ENSPLAG00000017660	smg6	74	54.444	ENSSPUG00000007152	SMG6	72	58.530	Sphenodon_punctatus
ENSPLAG00000017660	smg6	100	73.418	ENSSPAG00000015633	smg6	100	74.096	Stegastes_partitus
ENSPLAG00000017660	smg6	74	53.955	ENSSSCG00000017826	SMG6	77	56.701	Sus_scrofa
ENSPLAG00000017660	smg6	83	50.885	ENSTGUG00000005836	SMG6	88	52.457	Taeniopygia_guttata
ENSPLAG00000017660	smg6	93	64.687	ENSTRUG00000000358	smg6	98	65.464	Takifugu_rubripes
ENSPLAG00000017660	smg6	95	72.456	ENSTNIG00000016164	smg6	100	71.385	Tetraodon_nigroviridis
ENSPLAG00000017660	smg6	74	51.152	ENSTBEG00000011424	SMG6	72	55.393	Tupaia_belangeri
ENSPLAG00000017660	smg6	66	55.983	ENSTTRG00000001175	SMG6	63	55.983	Tursiops_truncatus
ENSPLAG00000017660	smg6	74	53.948	ENSUAMG00000025152	SMG6	79	56.496	Ursus_americanus
ENSPLAG00000017660	smg6	61	95.833	ENSVPAG00000000225	SMG6	63	95.833	Vicugna_pacos
ENSPLAG00000017660	smg6	74	55.072	ENSVVUG00000021727	SMG6	84	55.145	Vulpes_vulpes
ENSPLAG00000017660	smg6	67	54.000	ENSXETG00000023799	SMG6	75	53.543	Xenopus_tropicalis
ENSPLAG00000017660	smg6	98	90.932	ENSXCOG00000009867	smg6	99	91.247	Xiphophorus_couchianus
ENSPLAG00000017660	smg6	100	94.812	ENSXMAG00000010321	smg6	100	94.812	Xiphophorus_maculatus