EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSPLAG00000018042 (Gene tree)
Gene ID: 106948941
Gene Symbol: r3hdm1
Alias: -
Full Name: R3H domain-containing protein 1-like
Gene Type: protein_coding
Species: Poecilia_latipinna
Status: putative
Strand: Minus strand
Length: 48707 bases
Position: chrKQ545630.1:32201-80907
Accession: 106948941
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPLAP00000028565	R3H	PF01424.22	6.1e-13	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPLAT00000030292	-	4406	XM_015034843	ENSPLAP00000028565	950 (aa)	XP_014890329	-

Gene Model

Click here to download ENSPLAG00000018042's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPLAG00000018042's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSPLAG00000018042	r3hdm1	61	63.296	ENSPLAG00000002971	r3hdm2	73	60.339

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPLAG00000018042	r3hdm1	91	59.947	ENSG00000048991	R3HDM1	89	60.000	Homo_sapiens
ENSPLAG00000018042	r3hdm1	100	78.128	ENSAPOG00000020850	r3hdm1	96	78.128	Acanthochromis_polyacanthus
ENSPLAG00000018042	r3hdm1	95	49.625	ENSAMEG00000014886	R3HDM1	80	49.469	Ailuropoda_melanoleuca
ENSPLAG00000018042	r3hdm1	100	75.737	ENSAOCG00000005192	r3hdm1	100	75.928	Amphiprion_ocellaris
ENSPLAG00000018042	r3hdm1	100	81.250	ENSAPEG00000016108	r3hdm1	100	81.352	Amphiprion_percula
ENSPLAG00000018042	r3hdm1	100	77.034	ENSATEG00000000232	r3hdm1	100	77.034	Anabas_testudineus
ENSPLAG00000018042	r3hdm1	94	49.085	ENSAPLG00000015231	R3HDM1	78	49.352	Anas_platyrhynchos
ENSPLAG00000018042	r3hdm1	95	47.216	ENSACAG00000001676	R3HDM1	80	47.609	Anolis_carolinensis
ENSPLAG00000018042	r3hdm1	91	60.212	ENSANAG00000035334	R3HDM1	87	60.212	Aotus_nancymaae
ENSPLAG00000018042	r3hdm1	100	78.822	ENSACLG00000027282	r3hdm1	100	78.888	Astatotilapia_calliptera
ENSPLAG00000018042	r3hdm1	86	71.795	ENSAMXG00000003536	r3hdm1	77	73.510	Astyanax_mexicanus
ENSPLAG00000018042	r3hdm1	100	52.535	ENSAMXG00000012861	R3HDM1	89	52.520	Astyanax_mexicanus
ENSPLAG00000018042	r3hdm1	52	54.673	ENSAMXG00000020587	arpp21	74	53.333	Astyanax_mexicanus
ENSPLAG00000018042	r3hdm1	99	47.202	ENSBTAG00000013302	R3HDM1	88	47.822	Bos_taurus
ENSPLAG00000018042	r3hdm1	91	60.212	ENSCJAG00000011718	R3HDM1	87	60.212	Callithrix_jacchus
ENSPLAG00000018042	r3hdm1	95	49.733	ENSCAFG00000005075	R3HDM1	80	49.682	Canis_familiaris
ENSPLAG00000018042	r3hdm1	95	49.733	ENSCAFG00020016119	R3HDM1	79	61.419	Canis_lupus_dingo
ENSPLAG00000018042	r3hdm1	95	49.623	ENSCHIG00000020851	R3HDM1	80	49.731	Capra_hircus
ENSPLAG00000018042	r3hdm1	95	46.598	ENSCPOG00000012784	R3HDM1	91	59.508	Cavia_porcellus
ENSPLAG00000018042	r3hdm1	91	59.626	ENSCCAG00000027199	R3HDM1	87	59.626	Cebus_capucinus
ENSPLAG00000018042	r3hdm1	91	59.947	ENSCATG00000023642	R3HDM1	87	59.947	Cercocebus_atys
ENSPLAG00000018042	r3hdm1	94	47.560	ENSCLAG00000007962	R3HDM1	89	60.579	Chinchilla_lanigera
ENSPLAG00000018042	r3hdm1	95	47.826	ENSCSAG00000016356	R3HDM1	80	47.487	Chlorocebus_sabaeus
ENSPLAG00000018042	r3hdm1	79	66.406	ENSCHOG00000013638	R3HDM1	68	66.406	Choloepus_hoffmanni
ENSPLAG00000018042	r3hdm1	91	50.895	ENSCPBG00000009645	R3HDM1	87	50.670	Chrysemys_picta_bellii
ENSPLAG00000018042	r3hdm1	91	59.947	ENSCANG00000034748	R3HDM1	87	59.947	Colobus_angolensis_palliatus
ENSPLAG00000018042	r3hdm1	99	44.227	ENSCGRG00001012357	R3hdm1	86	44.413	Cricetulus_griseus_chok1gshd
ENSPLAG00000018042	r3hdm1	99	45.533	ENSCGRG00000012080	R3hdm1	100	59.122	Cricetulus_griseus_crigri
ENSPLAG00000018042	r3hdm1	100	64.579	ENSCSEG00000008944	r3hdm1	100	65.689	Cynoglossus_semilaevis
ENSPLAG00000018042	r3hdm1	100	82.613	ENSCVAG00000007582	r3hdm1	100	82.613	Cyprinodon_variegatus
ENSPLAG00000018042	r3hdm1	91	48.712	ENSDNOG00000000771	R3HDM1	76	48.998	Dasypus_novemcinctus
ENSPLAG00000018042	r3hdm1	95	45.140	ENSETEG00000013606	R3HDM1	79	45.328	Echinops_telfairi
ENSPLAG00000018042	r3hdm1	86	65.732	ENSEASG00005007392	R3HDM1	89	47.030	Equus_asinus_asinus
ENSPLAG00000018042	r3hdm1	99	46.471	ENSECAG00000019114	R3HDM1	89	45.892	Equus_caballus
ENSPLAG00000018042	r3hdm1	90	51.279	ENSELUG00000014413	r3hdm1	83	52.444	Esox_lucius
ENSPLAG00000018042	r3hdm1	94	50.772	ENSELUG00000004909	R3HDM1	81	52.418	Esox_lucius
ENSPLAG00000018042	r3hdm1	86	65.732	ENSFCAG00000027113	R3HDM1	88	48.189	Felis_catus
ENSPLAG00000018042	r3hdm1	76	49.233	ENSFALG00000013731	R3HDM1	81	44.083	Ficedula_albicollis
ENSPLAG00000018042	r3hdm1	95	47.395	ENSFDAG00000016478	R3HDM1	89	62.084	Fukomys_damarensis
ENSPLAG00000018042	r3hdm1	100	80.714	ENSFHEG00000018713	r3hdm1	100	81.099	Fundulus_heteroclitus
ENSPLAG00000018042	r3hdm1	65	59.871	ENSGMOG00000006042	-	79	54.937	Gadus_morhua
ENSPLAG00000018042	r3hdm1	80	65.347	ENSGALG00000012246	R3HDM1	84	64.686	Gallus_gallus
ENSPLAG00000018042	r3hdm1	100	93.194	ENSGAFG00000006203	r3hdm1	100	93.717	Gambusia_affinis
ENSPLAG00000018042	r3hdm1	95	73.278	ENSGACG00000014925	r3hdm1	92	73.591	Gasterosteus_aculeatus
ENSPLAG00000018042	r3hdm1	94	50.164	ENSGAGG00000007840	R3HDM1	83	47.219	Gopherus_agassizii
ENSPLAG00000018042	r3hdm1	91	59.947	ENSGGOG00000008156	R3HDM1	87	59.947	Gorilla_gorilla
ENSPLAG00000018042	r3hdm1	53	73.393	ENSHBUG00000015737	R3HDM1	99	73.703	Haplochromis_burtoni
ENSPLAG00000018042	r3hdm1	95	47.831	ENSHGLG00000015718	R3HDM1	89	61.693	Heterocephalus_glaber_female
ENSPLAG00000018042	r3hdm1	95	47.624	ENSHGLG00100003184	-	89	61.693	Heterocephalus_glaber_male
ENSPLAG00000018042	r3hdm1	95	40.622	ENSHGLG00100015374	-	89	40.215	Heterocephalus_glaber_male
ENSPLAG00000018042	r3hdm1	100	65.428	ENSHCOG00000013366	r3hdm1	100	65.428	Hippocampus_comes
ENSPLAG00000018042	r3hdm1	100	51.168	ENSIPUG00000001676	R3HDM1	100	51.919	Ictalurus_punctatus
ENSPLAG00000018042	r3hdm1	91	61.789	ENSIPUG00000013629	r3hdm1	89	48.473	Ictalurus_punctatus
ENSPLAG00000018042	r3hdm1	99	46.273	ENSSTOG00000007572	R3HDM1	100	58.446	Ictidomys_tridecemlineatus
ENSPLAG00000018042	r3hdm1	94	49.168	ENSLACG00000005334	R3HDM1	83	48.960	Latimeria_chalumnae
ENSPLAG00000018042	r3hdm1	94	52.877	ENSLOCG00000001641	r3hdm1	79	53.304	Lepisosteus_oculatus
ENSPLAG00000018042	r3hdm1	86	64.798	ENSLAFG00000009065	R3HDM1	80	47.741	Loxodonta_africana
ENSPLAG00000018042	r3hdm1	86	66.044	ENSMFAG00000030331	R3HDM1	87	59.947	Macaca_fascicularis
ENSPLAG00000018042	r3hdm1	91	59.947	ENSMMUG00000009844	R3HDM1	87	59.947	Macaca_mulatta
ENSPLAG00000018042	r3hdm1	86	66.044	ENSMNEG00000027793	R3HDM1	87	59.947	Macaca_nemestrina
ENSPLAG00000018042	r3hdm1	91	59.947	ENSMLEG00000043189	R3HDM1	87	59.947	Mandrillus_leucophaeus
ENSPLAG00000018042	r3hdm1	100	75.348	ENSMAMG00000004532	r3hdm1	100	75.348	Mastacembelus_armatus
ENSPLAG00000018042	r3hdm1	100	75.996	ENSMZEG00005003157	r3hdm1	100	76.068	Maylandia_zebra
ENSPLAG00000018042	r3hdm1	90	50.567	ENSMGAG00000012461	R3HDM1	78	49.403	Meleagris_gallopavo
ENSPLAG00000018042	r3hdm1	99	43.930	ENSMAUG00000010315	R3hdm1	100	58.784	Mesocricetus_auratus
ENSPLAG00000018042	r3hdm1	91	59.682	ENSMICG00000042655	-	92	59.682	Microcebus_murinus
ENSPLAG00000018042	r3hdm1	91	59.947	ENSMICG00000005900	-	87	59.947	Microcebus_murinus
ENSPLAG00000018042	r3hdm1	94	45.951	ENSMODG00000000923	R3HDM1	85	45.850	Monodelphis_domestica
ENSPLAG00000018042	r3hdm1	100	74.649	ENSMALG00000009000	r3hdm1	90	74.549	Monopterus_albus
ENSPLAG00000018042	r3hdm1	99	44.041	MGP_CAROLIEiJ_G0014543	R3hdm1	100	63.306	Mus_caroli
ENSPLAG00000018042	r3hdm1	99	44.320	ENSMUSG00000056211	R3hdm1	100	63.306	Mus_musculus
ENSPLAG00000018042	r3hdm1	99	43.896	MGP_PahariEiJ_G0027779	R3hdm1	100	63.306	Mus_pahari
ENSPLAG00000018042	r3hdm1	99	44.320	MGP_SPRETEiJ_G0015350	R3hdm1	100	63.306	Mus_spretus
ENSPLAG00000018042	r3hdm1	95	49.517	ENSMPUG00000002412	R3HDM1	80	49.894	Mustela_putorius_furo
ENSPLAG00000018042	r3hdm1	99	46.220	ENSMLUG00000013824	R3HDM1	89	46.405	Myotis_lucifugus
ENSPLAG00000018042	r3hdm1	91	59.626	ENSNLEG00000008622	R3HDM1	87	59.626	Nomascus_leucogenys
ENSPLAG00000018042	r3hdm1	88	45.033	ENSMEUG00000011784	R3HDM1	81	44.868	Notamacropus_eugenii
ENSPLAG00000018042	r3hdm1	94	47.269	ENSODEG00000008607	R3HDM1	89	61.693	Octodon_degus
ENSPLAG00000018042	r3hdm1	94	77.503	ENSONIG00000012017	r3hdm1	85	77.503	Oreochromis_niloticus
ENSPLAG00000018042	r3hdm1	94	48.652	ENSOANG00000007987	R3HDM1	79	49.408	Ornithorhynchus_anatinus
ENSPLAG00000018042	r3hdm1	95	49.678	ENSOCUG00000017366	R3HDM1	88	49.309	Oryctolagus_cuniculus
ENSPLAG00000018042	r3hdm1	100	71.325	ENSORLG00000004297	r3hdm1	100	72.257	Oryzias_latipes
ENSPLAG00000018042	r3hdm1	100	71.694	ENSORLG00015017355	r3hdm1	100	71.227	Oryzias_latipes_hsok
ENSPLAG00000018042	r3hdm1	51	72.233	ENSOMEG00000003882	-	98	72.233	Oryzias_melastigma
ENSPLAG00000018042	r3hdm1	94	49.455	ENSOGAG00000003136	R3HDM1	79	49.622	Otolemur_garnettii
ENSPLAG00000018042	r3hdm1	95	49.623	ENSOARG00000010788	R3HDM1	80	49.626	Ovis_aries
ENSPLAG00000018042	r3hdm1	91	59.947	ENSPPAG00000027858	R3HDM1	87	59.947	Pan_paniscus
ENSPLAG00000018042	r3hdm1	91	59.682	ENSPPRG00000002626	R3HDM1	87	59.682	Panthera_pardus
ENSPLAG00000018042	r3hdm1	91	59.682	ENSPTIG00000016581	R3HDM1	87	59.682	Panthera_tigris_altaica
ENSPLAG00000018042	r3hdm1	91	59.947	ENSPTRG00000012494	R3HDM1	87	59.947	Pan_troglodytes
ENSPLAG00000018042	r3hdm1	91	59.947	ENSPANG00000026448	R3HDM1	87	59.947	Papio_anubis
ENSPLAG00000018042	r3hdm1	90	70.552	ENSPKIG00000004328	r3hdm1	80	69.632	Paramormyrops_kingsleyae
ENSPLAG00000018042	r3hdm1	94	48.977	ENSPSIG00000012915	R3HDM1	78	48.932	Pelodiscus_sinensis
ENSPLAG00000018042	r3hdm1	94	46.826	ENSPEMG00000015187	R3hdm1	100	58.446	Peromyscus_maniculatus_bairdii
ENSPLAG00000018042	r3hdm1	94	40.082	ENSPMAG00000003369	-	90	41.092	Petromyzon_marinus
ENSPLAG00000018042	r3hdm1	99	46.146	ENSPCIG00000002491	R3HDM1	88	46.146	Phascolarctos_cinereus
ENSPLAG00000018042	r3hdm1	100	91.934	ENSPFOG00000015036	r3hdm1	100	91.934	Poecilia_formosa
ENSPLAG00000018042	r3hdm1	100	98.633	ENSPMEG00000023947	r3hdm1	100	98.633	Poecilia_mexicana
ENSPLAG00000018042	r3hdm1	100	94.869	ENSPREG00000007902	r3hdm1	100	94.869	Poecilia_reticulata
ENSPLAG00000018042	r3hdm1	95	48.553	ENSPPYG00000012815	R3HDM1	80	47.983	Pongo_abelii
ENSPLAG00000018042	r3hdm1	93	54.142	ENSPCAG00000006208	R3HDM1	67	69.604	Procavia_capensis
ENSPLAG00000018042	r3hdm1	81	69.565	ENSPCOG00000012698	R3HDM1	79	69.565	Propithecus_coquereli
ENSPLAG00000018042	r3hdm1	95	43.455	ENSPVAG00000006098	R3HDM1	79	43.319	Pteropus_vampyrus
ENSPLAG00000018042	r3hdm1	56	54.630	ENSPNAG00000004162	arpp21	79	52.174	Pygocentrus_nattereri
ENSPLAG00000018042	r3hdm1	82	73.179	ENSPNAG00000013952	r3hdm1	77	73.179	Pygocentrus_nattereri
ENSPLAG00000018042	r3hdm1	99	44.683	ENSRNOG00000004099	R3hdm1	89	44.963	Rattus_norvegicus
ENSPLAG00000018042	r3hdm1	81	69.675	ENSRBIG00000033317	R3HDM1	86	69.675	Rhinopithecus_bieti
ENSPLAG00000018042	r3hdm1	91	59.947	ENSRROG00000034534	R3HDM1	87	59.947	Rhinopithecus_roxellana
ENSPLAG00000018042	r3hdm1	91	60.477	ENSSBOG00000020389	R3HDM1	87	60.477	Saimiri_boliviensis_boliviensis
ENSPLAG00000018042	r3hdm1	99	47.571	ENSSHAG00000016999	R3HDM1	88	47.422	Sarcophilus_harrisii
ENSPLAG00000018042	r3hdm1	84	74.000	ENSSFOG00015014134	r3hdm1	89	50.295	Scleropages_formosus
ENSPLAG00000018042	r3hdm1	100	47.536	ENSSFOG00015019851	-	94	56.180	Scleropages_formosus
ENSPLAG00000018042	r3hdm1	100	74.468	ENSSMAG00000001669	r3hdm1	90	74.569	Scophthalmus_maximus
ENSPLAG00000018042	r3hdm1	100	78.491	ENSSDUG00000010749	r3hdm1	100	78.739	Seriola_dumerili
ENSPLAG00000018042	r3hdm1	100	76.389	ENSSLDG00000004499	r3hdm1	90	76.634	Seriola_lalandi_dorsalis
ENSPLAG00000018042	r3hdm1	99	45.208	ENSSPUG00000004167	R3HDM1	88	45.728	Sphenodon_punctatus
ENSPLAG00000018042	r3hdm1	100	80.346	ENSSPAG00000004648	r3hdm1	100	80.448	Stegastes_partitus
ENSPLAG00000018042	r3hdm1	91	56.952	ENSSSCG00000015692	R3HDM1	87	56.952	Sus_scrofa
ENSPLAG00000018042	r3hdm1	90	49.321	ENSTGUG00000011750	R3HDM1	79	48.698	Taeniopygia_guttata
ENSPLAG00000018042	r3hdm1	100	71.125	ENSTRUG00000011654	r3hdm1	99	71.125	Takifugu_rubripes
ENSPLAG00000018042	r3hdm1	98	65.625	ENSTNIG00000010362	r3hdm1	99	65.827	Tetraodon_nigroviridis
ENSPLAG00000018042	r3hdm1	94	48.249	ENSTTRG00000003935	R3HDM1	79	48.531	Tursiops_truncatus
ENSPLAG00000018042	r3hdm1	79	50.895	ENSUAMG00000024806	R3HDM1	93	59.682	Ursus_americanus
ENSPLAG00000018042	r3hdm1	91	59.682	ENSUMAG00000005552	R3HDM1	87	59.682	Ursus_maritimus
ENSPLAG00000018042	r3hdm1	87	49.419	ENSVPAG00000007333	R3HDM1	74	49.651	Vicugna_pacos
ENSPLAG00000018042	r3hdm1	91	59.682	ENSVVUG00000006457	R3HDM1	88	59.682	Vulpes_vulpes
ENSPLAG00000018042	r3hdm1	95	46.072	ENSXETG00000019330	r3hdm1	89	46.802	Xenopus_tropicalis
ENSPLAG00000018042	r3hdm1	78	87.231	ENSXCOG00000017448	r3hdm1	93	88.441	Xiphophorus_couchianus
ENSPLAG00000018042	r3hdm1	100	93.187	ENSXMAG00000007885	r3hdm1	97	94.025	Xiphophorus_maculatus