EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSPLAG00000018155 (Gene tree)
Gene ID: 106962276
Gene Symbol: -
Alias: -
Full Name: regulator of nonsense transcripts 1-like
Gene Type: protein_coding
Species: Poecilia_latipinna
Status: putative
Strand: Minus strand
Length: 28110 bases
Position: chrKQ546708.1:47265-75374
Accession: 106962276
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPLAP00000014427	UPF1_Zn_bind	PF09416.10	9.1e-75	1	1
ENSPLAP00000014427	ResIII	PF04851.15	6.9e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPLAT00000022741	-	6520	XM_015056580	ENSPLAP00000014427	1107 (aa)	XP_014912066	UPI00072E175C

Gene Model

Click here to download ENSPLAG00000018155's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPLAG00000018155's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSPLAG00000018155	-	100	90.369	ENSPLAG00000016232	-	100	90.999

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPLAG00000018155	-	100	89.204	ENSG00000005007	UPF1	100	89.292	Homo_sapiens
ENSPLAG00000018155	-	100	90.999	ENSAPOG00000010916	-	100	91.449	Acanthochromis_polyacanthus
ENSPLAG00000018155	-	100	95.238	ENSAPOG00000023773	upf1	100	95.238	Acanthochromis_polyacanthus
ENSPLAG00000018155	-	100	88.644	ENSAMEG00000011474	UPF1	100	88.732	Ailuropoda_melanoleuca
ENSPLAG00000018155	-	93	90.664	ENSACIG00000010985	-	100	91.216	Amphilophus_citrinellus
ENSPLAG00000018155	-	100	93.496	ENSACIG00000019949	upf1	100	94.409	Amphilophus_citrinellus
ENSPLAG00000018155	-	100	91.089	ENSAOCG00000006352	-	100	91.539	Amphiprion_ocellaris
ENSPLAG00000018155	-	100	95.238	ENSAOCG00000018519	upf1	100	95.238	Amphiprion_ocellaris
ENSPLAG00000018155	-	100	90.950	ENSAPEG00000006292	-	100	91.539	Amphiprion_percula
ENSPLAG00000018155	-	100	95.238	ENSAPEG00000016344	upf1	100	95.238	Amphiprion_percula
ENSPLAG00000018155	-	100	94.170	ENSATEG00000017867	upf1	100	94.170	Anabas_testudineus
ENSPLAG00000018155	-	100	90.909	ENSATEG00000016606	-	100	91.269	Anabas_testudineus
ENSPLAG00000018155	-	95	91.174	ENSAPLG00000009175	UPF1	100	91.174	Anas_platyrhynchos
ENSPLAG00000018155	-	95	88.609	ENSANAG00000024107	UPF1	96	88.609	Aotus_nancymaae
ENSPLAG00000018155	-	100	90.673	ENSACLG00000022630	-	100	91.359	Astatotilapia_calliptera
ENSPLAG00000018155	-	100	93.496	ENSACLG00000007181	upf1	100	94.409	Astatotilapia_calliptera
ENSPLAG00000018155	-	100	91.975	ENSAMXG00000042187	upf1	100	92.876	Astyanax_mexicanus
ENSPLAG00000018155	-	100	88.664	ENSBTAG00000020922	UPF1	100	88.752	Bos_taurus
ENSPLAG00000018155	-	89	50.909	WBGene00004880	smg-2	91	51.010	Caenorhabditis_elegans
ENSPLAG00000018155	-	100	88.344	ENSCJAG00000019627	UPF1	100	88.431	Callithrix_jacchus
ENSPLAG00000018155	-	100	88.431	ENSCAFG00000014578	UPF1	100	88.519	Canis_familiaris
ENSPLAG00000018155	-	100	89.292	ENSCAFG00020012347	UPF1	100	89.381	Canis_lupus_dingo
ENSPLAG00000018155	-	100	89.530	ENSCHIG00000011018	UPF1	100	89.618	Capra_hircus
ENSPLAG00000018155	-	95	90.678	ENSTSYG00000008877	UPF1	98	90.678	Carlito_syrichta
ENSPLAG00000018155	-	96	89.944	ENSCAPG00000005758	UPF1	96	89.944	Cavia_aperea
ENSPLAG00000018155	-	100	89.750	ENSCPOG00000025463	UPF1	100	89.750	Cavia_porcellus
ENSPLAG00000018155	-	100	89.204	ENSCCAG00000032175	UPF1	100	89.292	Cebus_capucinus
ENSPLAG00000018155	-	94	90.832	ENSCATG00000040306	UPF1	98	90.832	Cercocebus_atys
ENSPLAG00000018155	-	95	90.772	ENSCLAG00000004037	UPF1	99	90.772	Chinchilla_lanigera
ENSPLAG00000018155	-	100	89.204	ENSCSAG00000005276	UPF1	100	89.292	Chlorocebus_sabaeus
ENSPLAG00000018155	-	100	89.858	ENSCPBG00000012513	UPF1	100	90.036	Chrysemys_picta_bellii
ENSPLAG00000018155	-	76	79.695	ENSCING00000021399	-	99	79.953	Ciona_intestinalis
ENSPLAG00000018155	-	99	71.467	ENSCSAVG00000006533	-	99	71.964	Ciona_savignyi
ENSPLAG00000018155	-	95	90.584	ENSCANG00000029819	UPF1	97	90.584	Colobus_angolensis_palliatus
ENSPLAG00000018155	-	100	89.333	ENSCGRG00001021067	Upf1	100	89.422	Cricetulus_griseus_chok1gshd
ENSPLAG00000018155	-	95	90.301	ENSCGRG00000013480	Upf1	98	90.301	Cricetulus_griseus_crigri
ENSPLAG00000018155	-	100	88.288	ENSCSEG00000017239	upf1	100	88.649	Cynoglossus_semilaevis
ENSPLAG00000018155	-	100	90.901	ENSCSEG00000016159	-	100	90.901	Cynoglossus_semilaevis
ENSPLAG00000018155	-	100	90.369	ENSCVAG00000010561	upf1	100	90.909	Cyprinodon_variegatus
ENSPLAG00000018155	-	100	91.794	ENSDARG00000016302	upf1	100	92.356	Danio_rerio
ENSPLAG00000018155	-	95	88.335	ENSDORG00000009984	Upf1	95	88.335	Dipodomys_ordii
ENSPLAG00000018155	-	84	72.465	FBgn0030354	Upf1	87	67.437	Drosophila_melanogaster
ENSPLAG00000018155	-	54	86.424	ENSEBUG00000010069	upf1	96	86.424	Eptatretus_burgeri
ENSPLAG00000018155	-	100	89.530	ENSEASG00005006549	UPF1	100	89.618	Equus_asinus_asinus
ENSPLAG00000018155	-	100	89.530	ENSECAG00000010639	UPF1	100	89.618	Equus_caballus
ENSPLAG00000018155	-	100	90.673	ENSELUG00000012916	-	100	91.121	Esox_lucius
ENSPLAG00000018155	-	100	92.329	ENSELUG00000020917	upf1	100	92.793	Esox_lucius
ENSPLAG00000018155	-	100	88.431	ENSFCAG00000009757	UPF1	100	88.519	Felis_catus
ENSPLAG00000018155	-	95	91.682	ENSFALG00000009312	UPF1	96	91.682	Ficedula_albicollis
ENSPLAG00000018155	-	95	90.678	ENSFDAG00000014816	UPF1	99	90.678	Fukomys_damarensis
ENSPLAG00000018155	-	100	93.369	ENSFHEG00000006428	upf1	100	93.369	Fundulus_heteroclitus
ENSPLAG00000018155	-	87	93.267	ENSFHEG00000016276	-	96	93.267	Fundulus_heteroclitus
ENSPLAG00000018155	-	100	89.403	ENSGMOG00000007541	upf1	100	90.116	Gadus_morhua
ENSPLAG00000018155	-	100	89.716	ENSGALG00000003220	UPF1	100	89.894	Gallus_gallus
ENSPLAG00000018155	-	64	95.506	ENSGAFG00000015443	-	85	97.406	Gambusia_affinis
ENSPLAG00000018155	-	100	90.369	ENSGAFG00000004831	upf1	100	90.999	Gambusia_affinis
ENSPLAG00000018155	-	100	90.259	ENSGAGG00000022217	UPF1	100	90.527	Gopherus_agassizii
ENSPLAG00000018155	-	95	91.532	ENSGGOG00000002608	UPF1	99	91.532	Gorilla_gorilla
ENSPLAG00000018155	-	86	94.872	ENSHBUG00000008939	upf1	95	94.872	Haplochromis_burtoni
ENSPLAG00000018155	-	88	93.506	ENSHBUG00000014694	upf1	100	93.506	Haplochromis_burtoni
ENSPLAG00000018155	-	100	88.606	ENSHGLG00000010900	UPF1	100	88.694	Heterocephalus_glaber_female
ENSPLAG00000018155	-	95	89.171	ENSHGLG00100005904	UPF1	96	89.171	Heterocephalus_glaber_male
ENSPLAG00000018155	-	100	90.917	ENSHCOG00000008918	upf1	100	91.277	Hippocampus_comes
ENSPLAG00000018155	-	100	92.155	ENSIPUG00000005108	UPF1	100	92.876	Ictalurus_punctatus
ENSPLAG00000018155	-	100	89.381	ENSSTOG00000009196	UPF1	100	89.469	Ictidomys_tridecemlineatus
ENSPLAG00000018155	-	100	88.624	ENSJJAG00000023151	Upf1	100	88.713	Jaculus_jaculus
ENSPLAG00000018155	-	100	90.314	ENSKMAG00000004962	upf1	100	90.999	Kryptolebias_marmoratus
ENSPLAG00000018155	-	100	90.664	ENSLBEG00000027848	-	100	91.113	Labrus_bergylta
ENSPLAG00000018155	-	100	92.812	ENSLBEG00000014862	upf1	100	94.250	Labrus_bergylta
ENSPLAG00000018155	-	64	90.691	ENSLACG00000008482	UPF1	100	90.691	Latimeria_chalumnae
ENSPLAG00000018155	-	100	91.351	ENSLOCG00000002072	upf1	100	92.342	Lepisosteus_oculatus
ENSPLAG00000018155	-	100	88.323	ENSLAFG00000014963	UPF1	100	88.411	Loxodonta_africana
ENSPLAG00000018155	-	100	88.967	ENSMFAG00000037748	UPF1	100	89.056	Macaca_fascicularis
ENSPLAG00000018155	-	100	88.732	ENSMMUG00000023286	UPF1	100	88.820	Macaca_mulatta
ENSPLAG00000018155	-	100	88.967	ENSMNEG00000000046	UPF1	100	89.056	Macaca_nemestrina
ENSPLAG00000018155	-	95	90.584	ENSMLEG00000028404	UPF1	99	90.584	Mandrillus_leucophaeus
ENSPLAG00000018155	-	100	90.917	ENSMAMG00000006231	-	100	91.293	Mastacembelus_armatus
ENSPLAG00000018155	-	100	93.094	ENSMAMG00000006229	upf1	100	94.260	Mastacembelus_armatus
ENSPLAG00000018155	-	100	95.041	ENSMZEG00005003489	upf1	100	95.041	Maylandia_zebra
ENSPLAG00000018155	-	100	90.673	ENSMZEG00005016386	-	100	91.359	Maylandia_zebra
ENSPLAG00000018155	-	95	90.687	ENSMGAG00000004745	UPF1	100	90.687	Meleagris_gallopavo
ENSPLAG00000018155	-	95	90.301	ENSMAUG00000011398	Upf1	95	90.301	Mesocricetus_auratus
ENSPLAG00000018155	-	100	89.292	ENSMICG00000001659	UPF1	100	89.381	Microcebus_murinus
ENSPLAG00000018155	-	100	88.468	ENSMOCG00000005699	Upf1	100	88.644	Microtus_ochrogaster
ENSPLAG00000018155	-	95	88.436	ENSMMOG00000007537	-	99	88.910	Mola_mola
ENSPLAG00000018155	-	100	93.231	ENSMMOG00000007881	upf1	100	93.321	Mola_mola
ENSPLAG00000018155	-	100	88.374	ENSMODG00000003689	UPF1	100	88.549	Monodelphis_domestica
ENSPLAG00000018155	-	100	92.509	ENSMALG00000000144	upf1	100	93.051	Monopterus_albus
ENSPLAG00000018155	-	100	89.417	ENSMALG00000018100	-	100	89.865	Monopterus_albus
ENSPLAG00000018155	-	100	89.244	MGP_CAROLIEiJ_G0031142	Upf1	100	89.333	Mus_caroli
ENSPLAG00000018155	-	100	89.244	ENSMUSG00000058301	Upf1	100	89.333	Mus_musculus
ENSPLAG00000018155	-	100	89.244	MGP_PahariEiJ_G0021607	Upf1	100	89.333	Mus_pahari
ENSPLAG00000018155	-	100	89.244	MGP_SPRETEiJ_G0032260	Upf1	100	89.333	Mus_spretus
ENSPLAG00000018155	-	100	89.292	ENSMPUG00000015516	UPF1	100	89.381	Mustela_putorius_furo
ENSPLAG00000018155	-	99	89.165	ENSMLUG00000012122	UPF1	99	89.254	Myotis_lucifugus
ENSPLAG00000018155	-	100	88.235	ENSNGAG00000024107	Upf1	100	88.323	Nannospalax_galili
ENSPLAG00000018155	-	100	91.418	ENSNBRG00000000670	upf1	100	92.335	Neolamprologus_brichardi
ENSPLAG00000018155	-	100	87.370	ENSNBRG00000022069	-	100	90.857	Neolamprologus_brichardi
ENSPLAG00000018155	-	95	84.934	ENSNLEG00000006062	UPF1	99	84.934	Nomascus_leucogenys
ENSPLAG00000018155	-	83	84.837	ENSMEUG00000014146	-	83	85.029	Notamacropus_eugenii
ENSPLAG00000018155	-	95	85.347	ENSOPRG00000014018	UPF1	99	85.347	Ochotona_princeps
ENSPLAG00000018155	-	100	89.563	ENSODEG00000012426	UPF1	100	89.563	Octodon_degus
ENSPLAG00000018155	-	100	95.131	ENSONIG00000010452	upf1	100	95.131	Oreochromis_niloticus
ENSPLAG00000018155	-	100	90.673	ENSONIG00000012729	-	100	91.359	Oreochromis_niloticus
ENSPLAG00000018155	-	100	89.016	ENSOANG00000004568	UPF1	100	89.016	Ornithorhynchus_anatinus
ENSPLAG00000018155	-	100	90.656	ENSORLG00000008453	upf1	100	90.656	Oryzias_latipes
ENSPLAG00000018155	-	100	90.575	ENSORLG00020014758	upf1	100	90.575	Oryzias_latipes_hni
ENSPLAG00000018155	-	100	90.575	ENSORLG00015010165	upf1	100	90.575	Oryzias_latipes_hsok
ENSPLAG00000018155	-	100	90.925	ENSOMEG00000003665	upf1	100	90.925	Oryzias_melastigma
ENSPLAG00000018155	-	100	89.292	ENSOGAG00000012866	UPF1	100	89.381	Otolemur_garnettii
ENSPLAG00000018155	-	96	87.511	ENSOARG00000010739	UPF1	100	87.511	Ovis_aries
ENSPLAG00000018155	-	95	90.584	ENSPPAG00000043884	UPF1	96	90.584	Pan_paniscus
ENSPLAG00000018155	-	100	88.431	ENSPPRG00000023470	UPF1	100	88.519	Panthera_pardus
ENSPLAG00000018155	-	95	89.459	ENSPTIG00000010159	UPF1	99	89.459	Panthera_tigris_altaica
ENSPLAG00000018155	-	100	88.967	ENSPTRG00000010721	UPF1	100	89.056	Pan_troglodytes
ENSPLAG00000018155	-	100	88.967	ENSPANG00000008847	UPF1	100	89.056	Papio_anubis
ENSPLAG00000018155	-	91	93.446	ENSPKIG00000006069	upf1	97	93.446	Paramormyrops_kingsleyae
ENSPLAG00000018155	-	70	90.464	ENSPSIG00000009491	UPF1	100	90.464	Pelodiscus_sinensis
ENSPLAG00000018155	-	100	91.261	ENSPMGG00000017327	upf1	100	92.252	Periophthalmus_magnuspinnatus
ENSPLAG00000018155	-	100	88.468	ENSPEMG00000001085	Upf1	100	88.556	Peromyscus_maniculatus_bairdii
ENSPLAG00000018155	-	100	85.957	ENSPMAG00000001206	upf1	100	85.957	Petromyzon_marinus
ENSPLAG00000018155	-	100	89.725	ENSPCIG00000006156	UPF1	100	89.814	Phascolarctos_cinereus
ENSPLAG00000018155	-	100	98.555	ENSPMEG00000011443	-	100	98.555	Poecilia_mexicana
ENSPLAG00000018155	-	100	90.288	ENSPMEG00000016319	-	100	90.917	Poecilia_mexicana
ENSPLAG00000018155	-	100	90.189	ENSPREG00000011247	-	100	90.819	Poecilia_reticulata
ENSPLAG00000018155	-	100	98.197	ENSPREG00000009940	upf1	100	98.197	Poecilia_reticulata
ENSPLAG00000018155	-	100	83.699	ENSPPYG00000009752	UPF1	100	83.786	Pongo_abelii
ENSPLAG00000018155	-	70	98.316	ENSPCAG00000012962	UPF1	69	98.316	Procavia_capensis
ENSPLAG00000018155	-	100	88.899	ENSPCOG00000023813	UPF1	100	88.987	Propithecus_coquereli
ENSPLAG00000018155	-	67	94.872	ENSPVAG00000003183	UPF1	69	94.872	Pteropus_vampyrus
ENSPLAG00000018155	-	100	90.729	ENSPNYG00000016731	-	100	91.359	Pundamilia_nyererei
ENSPLAG00000018155	-	100	95.041	ENSPNYG00000003694	upf1	100	95.041	Pundamilia_nyererei
ENSPLAG00000018155	-	100	92.065	ENSPNAG00000025614	upf1	100	92.967	Pygocentrus_nattereri
ENSPLAG00000018155	-	100	89.244	ENSRNOG00000020134	Upf1	100	89.333	Rattus_norvegicus
ENSPLAG00000018155	-	95	88.324	ENSRBIG00000013894	UPF1	98	91.667	Rhinopithecus_bieti
ENSPLAG00000018155	-	95	90.584	ENSRROG00000040935	UPF1	98	91.667	Rhinopithecus_roxellana
ENSPLAG00000018155	-	77	55.193	YMR080C	NAM7	87	55.193	Saccharomyces_cerevisiae
ENSPLAG00000018155	-	94	90.832	ENSSBOG00000023632	UPF1	96	90.832	Saimiri_boliviensis_boliviensis
ENSPLAG00000018155	-	95	90.789	ENSSHAG00000010499	UPF1	100	90.789	Sarcophilus_harrisii
ENSPLAG00000018155	-	100	91.539	ENSSFOG00015021095	upf1	100	91.989	Scleropages_formosus
ENSPLAG00000018155	-	100	92.633	ENSSMAG00000005055	upf1	100	93.531	Scophthalmus_maximus
ENSPLAG00000018155	-	100	91.097	ENSSMAG00000021018	-	100	91.367	Scophthalmus_maximus
ENSPLAG00000018155	-	100	90.917	ENSSDUG00000009629	-	100	91.367	Seriola_dumerili
ENSPLAG00000018155	-	100	93.363	ENSSDUG00000013320	upf1	100	94.529	Seriola_dumerili
ENSPLAG00000018155	-	100	93.773	ENSSLDG00000020868	upf1	100	94.170	Seriola_lalandi_dorsalis
ENSPLAG00000018155	-	100	90.917	ENSSLDG00000006878	-	100	91.367	Seriola_lalandi_dorsalis
ENSPLAG00000018155	-	100	90.179	ENSSPUG00000010538	UPF1	100	90.536	Sphenodon_punctatus
ENSPLAG00000018155	-	100	91.285	ENSSPAG00000000003	upf1	100	91.734	Stegastes_partitus
ENSPLAG00000018155	-	100	90.656	ENSSPAG00000011521	-	100	91.269	Stegastes_partitus
ENSPLAG00000018155	-	100	89.530	ENSSSCG00000039301	UPF1	99	91.548	Sus_scrofa
ENSPLAG00000018155	-	82	85.532	ENSTGUG00000001057	UPF1	100	89.497	Taeniopygia_guttata
ENSPLAG00000018155	-	100	92.773	ENSTRUG00000000150	upf1	100	93.531	Takifugu_rubripes
ENSPLAG00000018155	-	100	90.099	ENSTRUG00000005131	-	100	90.729	Takifugu_rubripes
ENSPLAG00000018155	-	100	85.892	ENSTTRG00000011544	UPF1	100	85.892	Tursiops_truncatus
ENSPLAG00000018155	-	100	89.292	ENSUAMG00000007093	UPF1	100	89.381	Ursus_americanus
ENSPLAG00000018155	-	95	91.548	ENSUMAG00000006652	UPF1	99	92.308	Ursus_maritimus
ENSPLAG00000018155	-	100	89.292	ENSVVUG00000007797	UPF1	100	89.381	Vulpes_vulpes
ENSPLAG00000018155	-	100	77.380	ENSXETG00000013602	upf1	100	77.380	Xenopus_tropicalis
ENSPLAG00000018155	-	97	95.331	ENSXCOG00000015275	-	96	95.331	Xiphophorus_couchianus
ENSPLAG00000018155	-	94	90.970	ENSXCOG00000005764	-	99	91.643	Xiphophorus_couchianus
ENSPLAG00000018155	-	100	95.574	ENSXMAG00000001703	-	100	95.574	Xiphophorus_maculatus
ENSPLAG00000018155	-	100	90.378	ENSXMAG00000002540	-	100	91.007	Xiphophorus_maculatus