EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSPLAG00000018158 (Gene tree)
Gene ID: -
Gene Symbol: cth1
Alias: -
Full Name: cysteine three histidine 1
Gene Type: protein_coding
Species: Poecilia_latipinna
Status: putative
Strand: Plus strand
Length: 2550 bases
Position: chrKQ545355.1:603823-606372
Accession: ZDB-GENE-990806-20
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPLAP00000028635	zf-CCCH	PF00642.24	4.4e-29	1	3
ENSPLAP00000028635	zf-CCCH	PF00642.24	4.4e-29	2	3
ENSPLAP00000028635	zf-CCCH	PF00642.24	4.4e-29	3	3

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPLAT00000022790	-	1822	-	ENSPLAP00000028635	323 (aa)	-	-

Gene Model

Click here to download ENSPLAG00000018158's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPLAG00000018158's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSPLAG00000018158	cth1	78	34.387	ENSPLAG00000015739	zfp36l2	50	34.387

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPLAG00000018158	cth1	84	63.899	ENSAPOG00000012552	cth1	99	66.323	Acanthochromis_polyacanthus
ENSPLAG00000018158	cth1	82	58.511	ENSACIG00000016026	cth1	99	56.075	Amphilophus_citrinellus
ENSPLAG00000018158	cth1	94	63.057	ENSAOCG00000001644	cth1	100	64.873	Amphiprion_ocellaris
ENSPLAG00000018158	cth1	94	63.057	ENSAPEG00000008930	cth1	100	64.873	Amphiprion_percula
ENSPLAG00000018158	cth1	93	65.325	ENSATEG00000002281	cth1	97	65.015	Anabas_testudineus
ENSPLAG00000018158	cth1	84	57.092	ENSACLG00000015353	cth1	100	56.522	Astatotilapia_calliptera
ENSPLAG00000018158	cth1	87	53.443	ENSAMXG00000025717	cth1	96	55.150	Astyanax_mexicanus
ENSPLAG00000018158	cth1	94	58.879	ENSCSEG00000014617	cth1	100	59.568	Cynoglossus_semilaevis
ENSPLAG00000018158	cth1	94	67.532	ENSCVAG00000001680	cth1	65	67.532	Cyprinodon_variegatus
ENSPLAG00000018158	cth1	85	51.034	ENSDARG00000057328	cth1	99	53.086	Danio_rerio
ENSPLAG00000018158	cth1	93	48.665	ENSELUG00000012738	cth1	99	48.810	Esox_lucius
ENSPLAG00000018158	cth1	94	71.338	ENSFHEG00000022665	cth1	100	71.975	Fundulus_heteroclitus
ENSPLAG00000018158	cth1	93	57.233	ENSGMOG00000007360	cth1	100	55.590	Gadus_morhua
ENSPLAG00000018158	cth1	94	86.076	ENSGAFG00000019288	cth1	100	86.076	Gambusia_affinis
ENSPLAG00000018158	cth1	93	59.875	ENSGACG00000000802	cth1	99	59.875	Gasterosteus_aculeatus
ENSPLAG00000018158	cth1	94	57.643	ENSHBUG00000014400	cth1	100	55.836	Haplochromis_burtoni
ENSPLAG00000018158	cth1	92	51.007	ENSHCOG00000010276	cth1	98	51.007	Hippocampus_comes
ENSPLAG00000018158	cth1	91	53.376	ENSIPUG00000018040	cth1	95	54.693	Ictalurus_punctatus
ENSPLAG00000018158	cth1	94	61.736	ENSKMAG00000005944	cth1	100	62.701	Kryptolebias_marmoratus
ENSPLAG00000018158	cth1	94	63.043	ENSLBEG00000019253	cth1	100	63.125	Labrus_bergylta
ENSPLAG00000018158	cth1	64	49.758	ENSLOCG00000002047	cth1	97	49.758	Lepisosteus_oculatus
ENSPLAG00000018158	cth1	93	48.518	ENSMAMG00000001525	cth1	99	48.518	Mastacembelus_armatus
ENSPLAG00000018158	cth1	94	58.280	ENSMZEG00005022335	cth1	100	56.467	Maylandia_zebra
ENSPLAG00000018158	cth1	88	63.158	ENSMMOG00000020518	cth1	100	64.145	Mola_mola
ENSPLAG00000018158	cth1	94	50.670	ENSMALG00000020738	cth1	58	59.729	Monopterus_albus
ENSPLAG00000018158	cth1	82	59.701	ENSNBRG00000022789	cth1	88	58.303	Neolamprologus_brichardi
ENSPLAG00000018158	cth1	93	58.176	ENSONIG00000021318	cth1	99	56.522	Oreochromis_niloticus
ENSPLAG00000018158	cth1	94	55.272	ENSORLG00000022847	cth1	100	58.917	Oryzias_latipes
ENSPLAG00000018158	cth1	94	55.591	ENSORLG00020011979	cth1	100	57.278	Oryzias_latipes_hni
ENSPLAG00000018158	cth1	94	55.591	ENSORLG00015013084	cth1	100	58.786	Oryzias_latipes_hsok
ENSPLAG00000018158	cth1	94	55.627	ENSOMEG00000005809	cth1	85	57.556	Oryzias_melastigma
ENSPLAG00000018158	cth1	91	50.473	ENSPKIG00000015883	cth1	95	49.045	Paramormyrops_kingsleyae
ENSPLAG00000018158	cth1	93	57.958	ENSPMGG00000004275	cth1	100	58.133	Periophthalmus_magnuspinnatus
ENSPLAG00000018158	cth1	100	98.762	ENSPFOG00000013583	cth1	100	98.762	Poecilia_formosa
ENSPLAG00000018158	cth1	94	98.350	ENSPMEG00000005744	cth1	100	98.350	Poecilia_mexicana
ENSPLAG00000018158	cth1	93	93.377	ENSPREG00000004099	cth1	100	93.377	Poecilia_reticulata
ENSPLAG00000018158	cth1	82	59.041	ENSPNYG00000016705	cth1	92	57.664	Pundamilia_nyererei
ENSPLAG00000018158	cth1	90	53.674	ENSPNAG00000013147	cth1	98	53.438	Pygocentrus_nattereri
ENSPLAG00000018158	cth1	81	56.364	ENSSFOG00015017190	cth1	87	54.513	Scleropages_formosus
ENSPLAG00000018158	cth1	94	62.928	ENSSMAG00000007977	cth1	100	66.667	Scophthalmus_maximus
ENSPLAG00000018158	cth1	94	64.634	ENSSDUG00000004321	cth1	100	65.244	Seriola_dumerili
ENSPLAG00000018158	cth1	93	63.720	ENSSLDG00000010023	-	100	64.329	Seriola_lalandi_dorsalis
ENSPLAG00000018158	cth1	94	63.526	ENSSLDG00000004516	-	100	64.134	Seriola_lalandi_dorsalis
ENSPLAG00000018158	cth1	94	64.134	ENSSLDG00000012760	cth1	100	64.742	Seriola_lalandi_dorsalis
ENSPLAG00000018158	cth1	94	62.342	ENSSPAG00000018659	cth1	100	66.139	Stegastes_partitus
ENSPLAG00000018158	cth1	94	59.561	ENSTRUG00000012770	cth1	100	59.561	Takifugu_rubripes
ENSPLAG00000018158	cth1	94	57.994	ENSTNIG00000000740	cth1	100	57.994	Tetraodon_nigroviridis
ENSPLAG00000018158	cth1	77	76.613	ENSXCOG00000003710	cth1	88	76.305	Xiphophorus_couchianus
ENSPLAG00000018158	cth1	94	87.580	ENSXMAG00000023885	cth1	100	87.580	Xiphophorus_maculatus