EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSPLAG00000018491 (Gene tree)
Gene ID: -
Gene Symbol: prdm1b
Alias: -
Full Name: PR domain zinc finger protein 1-like
Gene Type: protein_coding
Species: Poecilia_latipinna
Status: putative
Strand: Minus strand
Length: 5843 bases
Position: chrKQ546867.1:100842-106684
Accession: 106963602
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPLAP00000014721	zf-C2H2	PF00096.26	9.3e-19	1	3
ENSPLAP00000014721	zf-C2H2	PF00096.26	9.3e-19	2	3
ENSPLAP00000014721	zf-C2H2	PF00096.26	9.3e-19	3	3
ENSPLAP00000014721	zf-met	PF12874.7	5.1e-07	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPLAT00000023137	-	1893	XM_015058617	ENSPLAP00000014721	630 (aa)	XP_014914103	-

Gene Model

Click here to download ENSPLAG00000018491's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPLAG00000018491's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPLAG00000018491	prdm1b	95	36.850	ENSAPOG00000014135	-	81	36.850	Acanthochromis_polyacanthus
ENSPLAG00000018491	prdm1b	70	70.295	ENSAPOG00000022084	prdm1b	93	72.336	Acanthochromis_polyacanthus
ENSPLAG00000018491	prdm1b	96	78.808	ENSACIG00000014426	prdm1b	97	78.808	Amphilophus_citrinellus
ENSPLAG00000018491	prdm1b	93	73.980	ENSAOCG00000002230	prdm1b	98	74.150	Amphiprion_ocellaris
ENSPLAG00000018491	prdm1b	99	72.320	ENSAPEG00000019826	prdm1b	99	72.436	Amphiprion_percula
ENSPLAG00000018491	prdm1b	99	80.349	ENSATEG00000006924	prdm1b	99	80.349	Anabas_testudineus
ENSPLAG00000018491	prdm1b	73	61.111	ENSATEG00000021017	prdm1a	57	61.111	Anabas_testudineus
ENSPLAG00000018491	prdm1b	92	81.787	ENSACLG00000005487	prdm1b	89	81.787	Astatotilapia_calliptera
ENSPLAG00000018491	prdm1b	67	58.333	ENSCSEG00000009707	prdm1a	58	58.333	Cynoglossus_semilaevis
ENSPLAG00000018491	prdm1b	99	83.546	ENSCVAG00000016746	prdm1b	99	82.962	Cyprinodon_variegatus
ENSPLAG00000018491	prdm1b	53	61.111	ENSCVAG00000019081	prdm1a	57	61.111	Cyprinodon_variegatus
ENSPLAG00000018491	prdm1b	99	86.058	ENSFHEG00000019848	prdm1b	99	86.058	Fundulus_heteroclitus
ENSPLAG00000018491	prdm1b	97	90.538	ENSGAFG00000016191	prdm1b	97	90.538	Gambusia_affinis
ENSPLAG00000018491	prdm1b	91	69.444	ENSGACG00000002716	prdm1b	86	69.608	Gasterosteus_aculeatus
ENSPLAG00000018491	prdm1b	92	81.928	ENSHBUG00000001475	prdm1b	95	81.928	Haplochromis_burtoni
ENSPLAG00000018491	prdm1b	99	71.880	ENSHCOG00000003617	prdm1b	99	71.880	Hippocampus_comes
ENSPLAG00000018491	prdm1b	88	55.385	ENSIPUG00000013740	prdm1b	91	55.308	Ictalurus_punctatus
ENSPLAG00000018491	prdm1b	91	75.350	ENSKMAG00000011218	prdm1b	90	75.350	Kryptolebias_marmoratus
ENSPLAG00000018491	prdm1b	87	37.886	ENSKMAG00000016247	-	75	37.886	Kryptolebias_marmoratus
ENSPLAG00000018491	prdm1b	59	62.500	ENSKMAG00000017597	prdm1a	51	62.500	Kryptolebias_marmoratus
ENSPLAG00000018491	prdm1b	99	79.683	ENSLBEG00000020955	prdm1b	99	79.650	Labrus_bergylta
ENSPLAG00000018491	prdm1b	80	76.389	ENSLOCG00000004978	prdm1b	65	76.389	Lepisosteus_oculatus
ENSPLAG00000018491	prdm1b	99	79.426	ENSMZEG00005026361	prdm1b	95	79.426	Maylandia_zebra
ENSPLAG00000018491	prdm1b	93	79.392	ENSMMOG00000013458	prdm1b	96	79.392	Mola_mola
ENSPLAG00000018491	prdm1b	97	75.447	ENSMALG00000011410	prdm1b	99	75.610	Monopterus_albus
ENSPLAG00000018491	prdm1b	90	67.666	ENSONIG00000013583	prdm1b	83	86.747	Oreochromis_niloticus
ENSPLAG00000018491	prdm1b	99	67.190	ENSORLG00000010025	prdm1b	99	67.347	Oryzias_latipes
ENSPLAG00000018491	prdm1b	90	69.388	ENSORLG00015009022	prdm1b	93	68.624	Oryzias_latipes_hsok
ENSPLAG00000018491	prdm1b	99	47.293	ENSPKIG00000022335	prdm1b	83	44.992	Paramormyrops_kingsleyae
ENSPLAG00000018491	prdm1b	86	80.036	ENSPFOG00000003103	prdm1b	85	80.036	Poecilia_formosa
ENSPLAG00000018491	prdm1b	100	99.365	ENSPMEG00000007869	prdm1b	100	99.365	Poecilia_mexicana
ENSPLAG00000018491	prdm1b	99	96.372	ENSPREG00000011327	prdm1b	99	96.372	Poecilia_reticulata
ENSPLAG00000018491	prdm1b	90	40.483	ENSPVAG00000011732	PRDM1	80	41.006	Pteropus_vampyrus
ENSPLAG00000018491	prdm1b	62	61.111	ENSPNAG00000028442	prdm1a	56	61.111	Pygocentrus_nattereri
ENSPLAG00000018491	prdm1b	90	59.187	ENSSFOG00015021896	prdm1b	78	59.187	Scleropages_formosus
ENSPLAG00000018491	prdm1b	99	77.901	ENSSMAG00000020467	prdm1b	100	78.254	Scophthalmus_maximus
ENSPLAG00000018491	prdm1b	99	81.529	ENSSDUG00000020610	prdm1b	99	81.529	Seriola_dumerili
ENSPLAG00000018491	prdm1b	99	81.558	ENSSLDG00000021973	prdm1b	99	80.844	Seriola_lalandi_dorsalis
ENSPLAG00000018491	prdm1b	99	78.686	ENSSPAG00000000803	prdm1b	99	79.006	Stegastes_partitus
ENSPLAG00000018491	prdm1b	92	37.672	ENSSPAG00000009830	-	79	37.672	Stegastes_partitus
ENSPLAG00000018491	prdm1b	95	91.275	ENSXCOG00000018920	prdm1b	84	91.275	Xiphophorus_couchianus
ENSPLAG00000018491	prdm1b	99	82.669	ENSXMAG00000016765	prdm1b	94	89.292	Xiphophorus_maculatus