EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSPLAG00000019553 (Gene tree)
Gene ID: 106947525
Gene Symbol: -
Alias: -
Full Name: serine/arginine-rich splicing factor 1
Gene Type: protein_coding
Species: Poecilia_latipinna
Status: putative
Strand: Minus strand
Length: 4388 bases
Position: chrKQ545561.1:210811-215198
Accession: 106947525
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSPLAP00000015455	RRM_1	PF00076.22	1e-32	1	2
ENSPLAP00000015455	RRM_1	PF00076.22	1e-32	2	2
ENSPLAP00000015405	RRM_1	PF00076.22	1.7e-32	1	2
ENSPLAP00000015405	RRM_1	PF00076.22	1.7e-32	2	2
ENSPLAP00000015372	RRM_1	PF00076.22	1.7e-32	1	2
ENSPLAP00000015372	RRM_1	PF00076.22	1.7e-32	2	2
ENSPLAP00000029297	RRM_1	PF00076.22	2.3e-32	1	2
ENSPLAP00000029297	RRM_1	PF00076.22	2.3e-32	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSPLAT00000030686	-	597	-	ENSPLAP00000015455	198 (aa)	-	-
ENSPLAT00000024005	-	753	XM_015032585	ENSPLAP00000015372	250 (aa)	XP_014888071	UPI00072DD232
ENSPLAT00000030684	-	717	-	ENSPLAP00000029297	238 (aa)	-	-
ENSPLAT00000030661	-	747	XM_015032586	ENSPLAP00000015405	248 (aa)	XP_014888072	-

Gene Model

Click here to download ENSPLAG00000019553's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSPLAG00000019553's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSPLAG00000019553	-	81	45.062	ENSPLAG00000009243	srsf6a	79	38.168
ENSPLAG00000019553	-	100	100.000	ENSPLAG00000019613	-	100	100.000
ENSPLAG00000019553	-	92	84.324	ENSPLAG00000008416	srsf1b	77	87.302
ENSPLAG00000019553	-	80	41.758	ENSPLAG00000006480	srsf5b	60	43.243
ENSPLAG00000019553	-	84	40.642	ENSPLAG00000005508	srsf5a	72	34.766
ENSPLAG00000019553	-	82	47.368	ENSPLAG00000008812	srsf4	62	40.110
ENSPLAG00000019553	-	87	65.318	ENSPLAG00000022740	srsf9	73	66.484

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSPLAG00000019553	-	92	85.946	ENSACIG00000002623	-	96	88.587	Amphilophus_citrinellus
ENSPLAG00000019553	-	91	83.684	ENSACLG00000021693	-	80	81.373	Astatotilapia_calliptera
ENSPLAG00000019553	-	100	97.581	ENSACLG00000005676	-	100	97.581	Astatotilapia_calliptera
ENSPLAG00000019553	-	97	54.098	WBGene00004700	rsp-3	75	61.026	Caenorhabditis_elegans
ENSPLAG00000019553	-	87	69.942	ENSCING00000007375	-	79	68.984	Ciona_intestinalis
ENSPLAG00000019553	-	62	68.852	ENSCING00000000257	-	99	54.598	Ciona_intestinalis
ENSPLAG00000019553	-	87	71.098	ENSCSAVG00000006093	-	91	70.718	Ciona_savignyi
ENSPLAG00000019553	-	61	64.463	ENSCSAVG00000003567	-	96	51.497	Ciona_savignyi
ENSPLAG00000019553	-	85	68.571	FBgn0283477	SF2	73	67.204	Drosophila_melanogaster
ENSPLAG00000019553	-	99	73.840	ENSEBUG00000009582	-	93	68.889	Eptatretus_burgeri
ENSPLAG00000019553	-	92	83.511	ENSFHEG00000017425	-	97	84.865	Fundulus_heteroclitus
ENSPLAG00000019553	-	93	93.548	ENSGMOG00000010606	-	98	95.652	Gadus_morhua
ENSPLAG00000019553	-	91	85.027	ENSGAFG00000000609	-	79	84.000	Gambusia_affinis
ENSPLAG00000019553	-	100	99.600	ENSGAFG00000012721	-	100	99.600	Gambusia_affinis
ENSPLAG00000019553	-	93	95.135	ENSGACG00000011094	-	98	97.802	Gasterosteus_aculeatus
ENSPLAG00000019553	-	61	67.769	ENSHBUG00000015600	-	92	66.393	Haplochromis_burtoni
ENSPLAG00000019553	-	92	82.723	ENSHBUG00000015576	-	80	82.266	Haplochromis_burtoni
ENSPLAG00000019553	-	92	81.081	ENSHCOG00000008016	-	77	80.102	Hippocampus_comes
ENSPLAG00000019553	-	99	82.500	ENSMFAG00000034223	-	65	87.245	Macaca_fascicularis
ENSPLAG00000019553	-	91	84.574	ENSMZEG00005019071	-	99	83.069	Maylandia_zebra
ENSPLAG00000019553	-	100	97.581	ENSMZEG00005007947	-	100	97.581	Maylandia_zebra
ENSPLAG00000019553	-	92	84.239	ENSMMOG00000018849	-	77	86.243	Mola_mola
ENSPLAG00000019553	-	100	97.581	ENSNBRG00000019981	-	100	97.581	Neolamprologus_brichardi
ENSPLAG00000019553	-	92	84.066	ENSNBRG00000008134	-	76	85.052	Neolamprologus_brichardi
ENSPLAG00000019553	-	82	68.712	ENSOPRG00000004745	-	96	67.901	Ochotona_princeps
ENSPLAG00000019553	-	92	81.865	ENSONIG00000004857	-	80	83.415	Oreochromis_niloticus
ENSPLAG00000019553	-	60	87.500	ENSOANG00000007320	-	54	92.045	Ornithorhynchus_anatinus
ENSPLAG00000019553	-	84	55.689	ENSOCUG00000026856	-	95	53.846	Oryctolagus_cuniculus
ENSPLAG00000019553	-	91	87.432	ENSORLG00000005314	-	76	87.310	Oryzias_latipes
ENSPLAG00000019553	-	91	87.432	ENSORLG00015015497	-	76	87.310	Oryzias_latipes_hsok
ENSPLAG00000019553	-	91	85.638	ENSOMEG00000017711	-	76	85.644	Oryzias_melastigma
ENSPLAG00000019553	-	92	83.422	ENSPREG00000016792	-	79	84.848	Poecilia_reticulata
ENSPLAG00000019553	-	91	83.684	ENSPNYG00000020651	-	77	83.333	Pundamilia_nyererei
ENSPLAG00000019553	-	100	97.581	ENSPNYG00000017115	-	100	97.581	Pundamilia_nyererei
ENSPLAG00000019553	-	92	90.164	ENSSFOG00015004989	-	69	90.426	Scleropages_formosus
ENSPLAG00000019553	-	92	82.915	ENSSDUG00000003887	-	79	83.412	Seriola_dumerili
ENSPLAG00000019553	-	92	83.607	ENSTRUG00000017058	-	79	85.641	Takifugu_rubripes
ENSPLAG00000019553	-	92	80.435	ENSTNIG00000009993	-	80	82.143	Tetraodon_nigroviridis
ENSPLAG00000019553	-	92	84.066	ENSXCOG00000017888	-	78	86.631	Xiphophorus_couchianus
ENSPLAG00000019553	-	100	100.000	ENSXCOG00000009643	-	100	100.000	Xiphophorus_couchianus
ENSPLAG00000019553	-	91	85.484	ENSXMAG00000010797	-	79	84.422	Xiphophorus_maculatus